are appended below and in the attached document.
Many thanks,
Eugene Krissinel on behalf of Ivo Tews, CCP4 Chair.
Request for support for the 2024-2028 CCP4 grant application for funding
through the BBSRC
Dear colleague,
We are writing to ask for your support for the scientific proposal we
thanks,
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Dear All,
It is with a great sadness that I share with you that Alexey Vagin passed away
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Alexey made many developments in methods and software for
yes selecting models and chains in SSM & Gesamt is possible -- Eugene
From: CCP4 bulletin board on behalf of Eleanor Dodson
<176a9d5ebad7-dmarc-requ...@jiscmail.ac.uk>
Sent: 06 March 2023 14:55
To: ccp4bb
Subject: Re: [ccp4bb] Structural alignment and
Having indeed written Gesamt some 10-12 years ago, I had to refresh my memory
before answering.
Gesamt definitely aligns multiple structures, just give them all on command
line.
It should do clustering in "sheaf" mode (which assumes that chains have same
lengths and atoms are matched
On behalf of Dr. Nitzan Shabek, please see below -- Eugene Krissinel
Subject: Open postdoctoral position at University of California Davis
The Shabek lab is looking for a postdoctoral fellow with a strong background in
structural biology to join immediately to our research group
CCP4 of any problems.
Always connect to CCP4 Cloud via icon launcher found in CCP4 setup, or directly
at https://cloud.ccp4.ac.uk when working from a tablet device or smartphone.
Your feedback is important for future development and improvement of CCP4.
Kind regards,
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questions.
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This email and any attachments are intended solely for the use of the named
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Dear All,
CCP4 Cloud is now back to fully operational state after recent hardware
failure. The failure did not affect user data and projects. Please report any
malfunction to CCP4 team.
Many thanks for using CCP4 Cloud,
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This email and any attachments are intended solely
Dear All,
CCP4 Cloud was taken down abruptly due to hardware malfunction, which we try to
rectify. All user and project data should be safe but unavailable at the
moment. Once the problem is resolved, we will inform you with separate posting.
Apologies for the inconvenience,
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anybody with potential interest aware of this opportunity.
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This email and any attachments are intended solely for the use of the named
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approaches and all related matters. Please contribute and share your thoughts
and findings.
Many thanks,
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Christian Hübschle
Chairs, Special Session "Online Crystallography" iUCR-25
This email and any attachments are intended solely for the use of the named
recipient
ect of mine, but I shared one
> project with you now. Scroll down to the last refmac run after model
> building with coot. I just tried it again but it is still the same result.
>
> Thanks for the help!!
>
> Nadine
>
>
> Am 28.05.2020 um 19:28 schrieb Eugene Krissinel:
>
Cloud.
Development of CCP4 Cloud was supported by BBSRC UK Grant BB/L007037/1 and
is a result of a collaborative effort of many developers and enthusiasts.
CCP4build
*Automated model builder (from Eugene Krissinel and Andrey Lebedev, CCP4
Core Group)*
CCP4build combines several applications: CParrot, CBuc
, please
visit one of the following web-sites:
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All informal enquires may be sent to eugene.krissi...@stfc.ac.uk
Kind regards,
Eugene
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. Please see the previous note if you are choosing between the
systems.
Many thanks for your help,
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No, the question seems to be slightly different. While one can use
either CCP4's SSM or GESAMT to superpose 2 dimers, these algorithms
would balance RMSD between both chains and produce something optimal for
both chains. What is required, however, is optimal superposition on one
pair of chains
not remember reports on lost data due to CCP4 upgrade from users :)
Best regards,
Eugene
Thanks.
Mohamed
On 18/12/2014 21:54, Eugene Krissinel wrote:
Dear CCP4 Users,
The CCP4 Core Group is very pleased to announce the release of the latest
version of the CCP4 Software Suite. Version 6.5
yet
closer to community expectations and standards.
Many thanks for being CCP4 users,
Eugene Krissinel
on behalf of CCP4 Core Team:
Marcin Wojdyr
Charles Ballard
Andrey Lebedev
Ville Uski
Ronan Keegan
David Waterman.
It is in fact possible that different solution conditions favor different
oligomeric assemblies. For example, perhaps your protein, which in one set of
solution conditions prefers the monomer, prefers some other assembly under the
crystallization conditions (we've seen this in our own work).
Correct syntax is
superpose A.pdb B.pdb -o C.pdb
Doing
superpose A.pdb B.pdb C.pdb
will result in *multiple* structure alignment of all three structures (i.e.
C.pdb ought to be an input, rather than output, file here). In general,
superpose XYZ1.pdb XYZ2.pdb XYZ3.pdb . XYZN.pdb
will do
/2014 10:33 AM, Eugene Krissinel wrote:
Correct syntax is
superpose A.pdb B.pdb -o C.pdb
Doing
superpose A.pdb B.pdb C.pdb
will result in *multiple* structure alignment of all three structures (i.e.
C.pdb ought to be an input, rather than output, file here). In general,
superpose XYZ1.pdb
This problem cannot have an ultimate solution unless your chains are of the
same length and you postulate that residues should be corresponded one-to one.
But if this is the case, LSQKAB is the tool.
If correspondence between C-alphas is ambiguous, you need to align structures
in order to find
This is just a petty function in CCP4's MMDB library -- Eugene
On 4 Sep 2014, at 20:52, Chen Zhao wrote:
Hi all,
I am just curious whether there are some tools extracting the Euler angles
from a fractional coordinate matrix. I have no luck searching it online.
Alternatively, I found
It is probably Gesamt/SSM (Superpose in CCP4), or PDBeFold at EBI rather than
PISA -- Eugene
On 13 Aug 2014, at 12:33, Eleanor Dodson wrote:
I think PISA does this for you - it overlaps structural features and gives an
RMSD on those parts that fit and a useful list of matching residues.
You
Dear All,
CCP4 releases new PISA web-server at the following URL:
http://www.ccp4.ac.uk/pisa . As always, constructive criticism, bug reports and
feature requests are welcome.
Enjoy!
Eugene Krissinel.
--
Scanned by iCritical.
CCP4 server was barely accessible to me for some 2 hours yesterday evening,
this should be the most plausible explanation of the effect. However, let us
know if problem reappears.
Eugene
On 14 Jun 2014, at 10:55, Mark van Raaij wrote:
same happened to me yesterday evening, but when I retried
I take this chance to to confirm once more, as publicly as possible, that file
paths with spaces are discouraged in today's CCP4. This inconvenience
originates from ancient times in computing when good half of CCP4 was written
and when spaces were disallowed on file system nodes.
Please take a
of Molecular
Microbiology and Biotechnology
Tel Aviv University 69978, Israel
Acta Crystallographica F, co-editor
e-mail: mbfro...@post.tau.ac.ilmailto:mbfro...@post.tau.ac.il
Tel: ++972-3640-8723
Fax: ++972-3640-9407
Cellular: 0547 459 608
On Jun 3, 2014, at 14:47 , Eugene Krissinel
eugene.krissi
Charlie,
Most probably this indicates a problem with your PDB file, either a format or
things like misplaced or absent residue name etc. If you can send me your files
and exact command that you run, I can have a look into this.
In future, if you see a message like report to developer please
this be confirmed by
you/circumvented by the user (i.e. by changing the com file) or eventualy
solved?
Thanks again!
H
Quoting Eugene Krissinel eugene.krissi...@stfc.ac.uk:
I would say the guess is a wrong one. SS superposition is used only as a
seed for further refinement. SSM (superpose
I would say the guess is a wrong one. SS superposition is used only as a seed
for further refinement. SSM (superpose) outputs all residues (not all atoms)
and marks those which get aligned. Then, superposition is done using aligned
residues. Alignment != superposition.
As to LSQKAB, it's pure
Thank you Piotr, this is very useful to know.
Cheers,
Eugene
On 24 Apr 2014, at 22:18, Piotr Sliz wrote:
Eugene,
SBGrid Consortium supports certain paid programs such as Pymol, Schrodinger,
and Geneious, and academic laboratories have access to a limited pool of
tokens. For more
SBGrid is a also good option if you can afford it. It comes with PyMOL
licenses.
- it would be helpful if SBGrid people can comment on this. AFAIK, nothing in
SBGrid comes with paid licenses, and SBGrid fees are just for installing and
maintaining the software. Individual program licenses
If you are using a standalone Coot package, you may want to try one from
regular CCP4 distribution instead. Coot is integrated in CCP4 6.4.0, and
installation of CCP4 is fully automated so that no manual tweaking should be
required.
Eugene
On 15 Apr 2014, at 13:24, Monica Mittal wrote:
Hi
Dear Sreetama,
For this, Gesamt from ccp4 should do the work. Run gesamt without parameters to
get instructions, they are basically the same as for ccp4's superpose.
HTH,
Eugene
On 19 Mar 2014, at 07:34, sreetama das wrote:
Dear All,
Is there a way to superpose multiple,
Dear All,
CCP4 Core Group is aware of the issue and is looking into it. Once fixed, new
cprodrg will be put into update.
Thank you,
Eugene Krissinel
On 25 Nov 2013, at 13:46, Oliver Clarke wrote:
Hi all,
I have recently been trying to use the LIDIA ligand-viewer of Coot, which
calls
updates are reported available by your ccp4i.
Many thanks,
Eugene Krissinel
Begin forwarded message:
From: Andrey Lebedev
andrey.lebe...@stfc.ac.ukmailto:andrey.lebe...@stfc.ac.uk
Date: 6 November 2013 12:52:31 GMT
To: CCP4BB@JISCMAIL.AC.UKmailto:CCP4BB@JISCMAIL.AC.UK
Subject: [ccp4bb
This is to be answered by PDB people, who definitely read BB :)
Would be nice to have a tool common between CCP4/Phenix and the PDB which sorts
this out
Eugene
On 30 Oct 2013, at 12:09, Andreas Förster wrote:
Dear all,
this water discussion is flowing increasingly towards a place where I
Yes, this is a result of some imperfectness in shared build (6.3.0 was static).
The bug should have been fixed in updated release bundles, and also in the
recent update.
Eugene
From: CCP4 bulletin board [CCP4BB@JISCMAIL.AC.UK] on behalf of Dmitry
that they have encountered.
Sincerely yours,
Eugene Krissinel
--
Scanned by iCritical.
This is most probably because of last-minute changes for CCP4 release, you just
got us in a *very* wrong moment, we are moving files on the server. Please come
back in 2 hours or so.
Eugene.
On 10 Oct 2013, at 17:55, Swastik Phulera wrote:
Dear All,
I am currently setting up a system
Dear CCP4 Users,
The CCP4 Core Group is very pleased to announce the release of the latest
version of the CCP4 Software Suite. Version 6.4.0 (Long Preston) is now
available from the CCP4 download website:
http://www.ccp4.ac.uk/download.phphttp://www.ccp4.ac.uk/download/
The release is
-8723
Fax: ++972-3640-9407
Cellular: 0547 459 608
On Oct 10, 2013, at 22:31 , Eugene Krissinel eugene.krissi...@stfc.ac.uk
wrote:
Dear CCP4 Users,
The CCP4 Core Group is very pleased to announce the release of the latest
version of the CCP4 Software Suite. Version 6.4.0 (Long Preston
, co-editor
e-mail: mbfro...@post.tau.ac.ilmailto:mbfro...@post.tau.ac.il
Tel: ++972-3640-8723
Fax: ++972-3640-9407
Cellular: 0547 459 608
On Oct 10, 2013, at 22:31 , Eugene Krissinel
eugene.krissi...@stfc.ac.ukmailto:eugene.krissi...@stfc.ac.uk wrote:
Dear CCP4 Users,
The CCP4 Core Group
Completely agree. Perhaps there could be a distinction between working and
deposition formats. They are for different purposes and, therefore, could
differ from each other -- Eugene
On 19 Sep 2013, at 10:45, Phil Evans wrote:
Do you really want to read the whole of a long reflection loop into
I doubt that memory mapping will help the problem in any way. At best, it will
translate lack of RAM into overhead of data exchange between disk and RAM,
although seamlessly for programmer. However, modern OSes do this anyway for
excessive heap allocations. Phil's comment was specifically about
problem with multiple
lattices (e.g. non-merohedral twins) where a single observation (intensity)
may have multiple indices hkl attached to it, and this doesn't fit neatly
into a rectangular array without padding.
Phil
On 19 Sep 2013, at 12:11, Eugene Krissinel eugene.krissi...@stfc.ac.uk
It is highly advisable to start doing such structures in mmCIF, because soon
this is likely to be the only way to go
Eugene
On 2 Sep 2013, at 09:37, Dirk Kostrewa wrote:
Dear Martyn, Pavel and other interested,
I think, an official extension by the PDB to two characters for the chain names
of James Stroud
[xtald...@gmail.com]
Sent: Wednesday, August 07, 2013 1:51 PM
To: CCP4BB@JISCMAIL.AC.UK
Subject: Re: [ccp4bb] mmCIF as working format?
On Aug 5, 2013, at 4:33 AM, Eugene Krissinel wrote:
I just hope that one day we all will be discussing a sort of universal API
to read/write
Dear All,
The following post is on behalf of Kim Henrick, where I add some editing and
thoughts of my own with his permission, so I refer to both of us in the text.
As Herbert notices quite rightly, we need to respect each other working
preferences and needs. I should think that much of effort
I just hope that one day we all will be discussing a sort of universal API to
read/write structural information instead of referencing to raw formats, and
routines to query MX data, which would be more appropriate than grep (would
many SB students/postdocs use grep these days? but many if them
type. Many thanks -- Eugene
Begin forwarded message:
From: Eugene Krissinel
eugene.krissi...@stfc.ac.ukmailto:eugene.krissi...@stfc.ac.uk
Date: 12 July 2013 12:47:26 GMT+01:00
To: CCP4BB@JISCMAIL.AC.UKmailto:CCP4BB@JISCMAIL.AC.UK
Subject: [ccp4bb] CCP4 Support 32 bit OSX - request for feedback
or 10.6.
PLEASE DO NOT CC THIS TO THE WHOLE CCP4BB BY MERE REPLYING TO THIS E-MAIL!
I appreciate your time and willingness to help.
Many thanks,
Eugene Krissinel.
Begin forwarded message:
Date: 10 July 2013 16:35:44 GMT+01:00
To: hari jayaram hari...@gmail.com
Cc: CCP4BB@JISCMAIL.AC.UK
Subject
PS Please consult http://support.apple.com/kb/ht3696 for how to determine your
CPU type. Many thanks -- Eugene
Begin forwarded message:
From: Eugene Krissinel
eugene.krissi...@stfc.ac.ukmailto:eugene.krissi...@stfc.ac.uk
Date: 12 July 2013 12:47:26 GMT+01:00
To: CCP4BB
Sadly not, we are dropping support for 32-bit Macs. You can still install
32-bit CCP4 6.3.0 from dmg.
Sorry -- Eugene
On 10 Jul 2013, at 16:04, hari jayaram wrote:
Hi ,
I am trying to use the CCP4 package manager on my 32 bit OSX 10.6.8 running
laptop and it complains
/bin/sh:
Dear Herman,
I am looking at protein complexes with ligands containing non-natural amino
acids. When I run PISA, I get the total area of the ligand, as well as the area
of the ligand-protein interface, but hydrogen bonds and salt links are not
recognized. I therefore do not think the
This is the kind of things MG was designed to do -- Eugene
On 4 Jun 2013, at 15:18, Tobias Beck wrote:
Dear all,
I would like to visualize the interface of a protein-protein complex. The
complex formation is modulated by a ligand that upon binding alters the overall
structure of one protein,
Would PISA not do this? -- Eugene
On 25 Apr 2013, at 09:20, abhimanyu singh wrote:
Hi Hong,
In your PDB file if the BIOMT transformation matrix (under remark 350) is
provided, you can use this script to generate the biological assembly :
http://watcut.uwaterloo.ca/cgi-bin/makemultimer/
What, I'm afraid, people rarely realise these days, is that their desktops are,
essentially, GUIs to various OS features, so they obviously use GUI more
frequently than they think :) After all, this is all matter of habits and
training, and the reality is that people get more and more
Sorry that this was unclear. We assume that updater is used primarily from
ccp4i, where nothing changed (and why it should be used from command line at
all ?:)). The name was changed because it is reserved in Windows, which caused
lots of troubles. Now it will stay as is.
Eugene
On 11 Apr
That's really hard. Duel?
Eugene
On 11 Apr 2013, at 16:32, James Holton wrote:
CCP4 has a GUI?
-James Holton
MAD Scientist
On 4/11/2013 5:17 AM, eugene.krissi...@stfc.ac.uk wrote:
Sorry that this was unclear. We assume that updater is used primarily from
ccp4i, where nothing
Dear Dale,
From next CCP4 release (due soon), ccp4um will be runnable from command line
in automatic, non-graphical mode, fully cronable. I hope that that will give
you what you want. --check-silent is a special option for ccp4i, it only
checks for new updates but do not install them.
Best
In promise for next release.
On 11 Apr 2013, at 18:16, James Stroud wrote:
On Apr 11, 2013, at 6:17 AM,
eugene.krissi...@stfc.ac.ukmailto:eugene.krissi...@stfc.ac.uk
eugene.krissi...@stfc.ac.ukmailto:eugene.krissi...@stfc.ac.uk wrote:
Sorry that this was unclear. We assume that updater is
In cases like this, a request at c...@stfc.ac.uk should be the way to go. CCP4
is a community resource and we are to listen and to do what's doable. We may
not do everything at once, but knowing what is required is vital for the
project.
Cheers,
Eugene
On 11 Apr 2013, at 18:22, Antony
No, it got renamed to ccp4um :) That should have been written in update
descriptions, was it not?
Eugene
On 11 Apr 2013, at 03:54, James Stroud wrote:
Hello All,
I downloaded a crispy new version of CCP4 and ran update until the update
update script disappeared. Is the reason that CCP4
Spasibo Andrey,
Ne znayu poka kak na Linuxe i vse ostal'noe, no na Mac superpose ne
proupdeitirovalas', matritsy ne pechataet. Poka ne znayu chto sluchilos'
Eugene
On 15 Mar 2013, at 23:51, Andrey Lebedev wrote:
Dear CCP4 Users
A CCP4 update has just been released, consisting of the
Apologies for everybody, the previous message was sent to BB by mistake, please
disregard.
Eugene Krissinel
Begin forwarded message:
Date: 16 March 2013 11:25:08 GMT
To: andrey.lebe...@stfc.ac.ukmailto:andrey.lebe...@stfc.ac.uk
Cc: CCP4BB@JISCMAIL.AC.UKmailto:CCP4BB@JISCMAIL.AC.UK
Subject: Re
superpose and gesamt in ccp4
On 14 Mar 2013, at 20:53, Chen Zhao wrote:
Dear all,
I am now struggling to align two 3D RNA structures. I know there are a bunch
of web servers, but they either just generated a pdb file with a single
aligned structure, or they left the ligand out.
Does
Two months ago, CCP4 deployed a new viewer for annotated result reports (plots
etc), which does not depend on browsers and java, exactly for reasons that you
write about. Do you use 6.3.0 with updates, and if yes, does your question mean
that the new viewer does not work for you? The viewer
Indeed there is a new viewer and it usually works.
it would be nice to have specific feedback where it does not, against previous,
browser-based, system
But I also have pre 6.3.0 results that I need to view and somehow the ccp4i
qtRviewer does not manage to load the results...
I would
with CCP4 release 6.3.0,
therefore upgrade if necessary. Please report any bugs to
c...@stfc.ac.ukmailto:c...@stfc.ac.uk
Many thanks for using CCP4
Eugene Krissinel
--
Scanned by iCritical.
Dear Engin,
QtPISA outputs the same textual information as the previous command-prompt
routine, check File/Export plain text. What is probably confusing is that it
does not export everything in one go, but rather precisely the portion that is
currently displayed in the right-hand side of the
Apologies, I'd like to retract my post, it is indeed that only general lists of
interfaces and assemblies are exported in plain text.
We will try to fix this as soon as feasible.
Eugene
On 4 Mar 2013, at 11:13, eugene.krissi...@stfc.ac.uk
eugene.krissi...@stfc.ac.uk wrote:
Dear Engin,
Check with PISA@EBI, it has database searches where you can fetch all
dodecamers in the PDB
Eugene
On 20 Feb 2013, at 06:29, Hui Wang wrote:
Dear all,
I am looking for proteins that form a dodecameric ring structure (Not two
rings of hexamer Nor tetrahedral distribution of subunit trimers).
Thank you Francois
for positive feedback.
Eugene
On 15 Feb 2013, at 05:40, Francois Berenger wrote:
It is easy to use and even nice looking.
Regards,
F.
--
Scanned by iCritical.
Thank you very much Bernhard. Feedbacks like yours have enormous encouraging
effect on developers.
Eugene.
On 1 Feb 2013, at 00:02, Bernhard Rupp (Hofkristallrat a.D.) wrote:
Hi Fellows from the programming department(s),
I just had the pleasure to work with the new update mechanism and
Dear Boaz,
If that was not done, it's an oversight. Surely this is possible, will have a
look into.
Thanks for reporting (but please use c...@stfc.ac.uk for future bug reports
please),
Eugene
On 26 Jan 2013, at 14:00, Boaz Shaanan wrote:
Dear Developers,
As part of the wonderful work
Dear Kay,
Many thanks for nice words! We appreciate feedback from all our users.
Indeed, we expect that the update system will result in a lower frequency of
releases. Yet, full-scale releases will be needed. A good analogy here are the
update vs upgrade procedures in operating systems. An
Dear Andreas,
Sorry for late response to your post and confusion with the updater. For
technical reasons (Windows does not like names containing update :)), the
updater was renamed into ccp4um (ccp4 update manager) and is found in $CCP4/bin.
I hope this helps,
Eugene
Dear CCP4 maintainers,
Dear Chris,
Indeed, you cannot use Package Manager on Mac OSX for installing CCP4 in custom
location, which is due to petty technicalities and pragmatism. However, CCP4
can be installed in non-standard locations with raw *.dmg's downloadable from
our web site, which is supposed to be as easy
,
therefore upgrade if necessary. Please report any bugs to
c...@stfc.ac.ukmailto:c...@stfc.ac.uk
Many thanks for using CCP4.
Eugene Krissinel
--
Scanned by iCritical.
CCP4 now has QtPISA, where the output is prettier than at the EBI :)
Eugene
On 6 Jan 2013, at 12:42, Eleanor Dodson wrote:
pisa at the ebi will do this very nicely.
Upload your pdb files.
PISA is part of the CCP4 distribution too, but the EBI output is prettier
Eleanor
On 4 Jan 2013,
with CCP4 release 6.3.0,
therefore upgrade if necessary. Please report any bugs to
c...@stfc.ac.ukmailto:c...@stfc.ac.uk.
Many thanks for using CCP4.
CCP4 Core Team wishes you a very Merry Christmas and Happy New Year 2013!
[cid:BC01B0FF-48A9-4F73-B598-537FAD429F22@rc-harwell.ac.uk]
Eugene
). In addition, the update contains fixes specific to Windows 8,
therefore, the latest CCP4 6.3.0 bundle is installable on that system, too.
Many thanks for using CCP4,
Eugene Krissinel.
--
Scanned by iCritical.
that that
directory is empty and retry
2) you experienced an accidental data corruption during download. Please just
retry
If, after doing (1) and (2), you still have the same problem, please contact me.
Best regards,
Eugene Krissinel.
On 17 Dec 2012, at 10:38, Masaki UNNO wrote:
Hi all
I installed
/update_manual.html
Note that auto-updates will work correctly only with CCP4 release 6.3.0,
therefore upgrade if necessary. Please report any bugs to
c...@stfc.ac.ukmailto:c...@stfc.ac.uk.
Many thanks for using CCP4,
Eugene Krissinel Andrey Lebedev
--
Scanned by iCritical.
CCP4's gesamt should help you here. It can search a collection of PDB/mmCIF
files for a structural match, any mainchain fragment with C-alphas would do.
For searching through an archive, you need to use it off-line, from a terminal
window. Run $CCP4/bin/gesamt without parameters, it will print
Ccp4's Gesamt (new algorithm, interfaced jointly with SSM in ccp4i) should do
what you want -- Eugene
From: CCP4 bulletin board [CCP4BB@JISCMAIL.AC.UK] on behalf of Zhijie Li
[zhijie...@utoronto.ca]
Sent: Thursday, October 25, 2012 12:45 AM
To: ccp4bb
Dear Bill,
You have not missed anything, we do not have a mechanism for delivering source
code *updates* in automatic fashion as yet. Our statistics shows that source
code distributions make only 2-3% of binary downloads, therefore, I hope that
you would understand that we have to prioritise
Try PISA
-- Eugene
On 4 Oct 2012, at 08:09, sreetama das wrote:
Dear all,
Is there any CCP4 module/ other software/ web server which can
determine which particular residues form the surface of a pocket/ binding-site
in a protein?
Thanks in advance,
sreetama
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Thanks for nice question.
Currently, CCP4 update is applicable only to what is distributed as CCP4
core, which guarantees a definite location in $CCP4 directory. Also, updates
are not supposed to deliver releases (upgrades), but rather smallish changes
between them.
Coot is not part of CCP4
We are thinking of including MG into core in one of future releases, probably
by next summer. As to Coot, it will probably stay autonomous.
Eugene
On 1 Oct 2012, at 13:14, Dirk Kostrewa wrote:
Dear Eugene,
thank you for your kind reply and your explanation!
Since the CCP4 download site
. Pannu
(Leiden), H. Powell (Cambridge), T. Schneider (Hamburg), T. Schwede (Basel), T.
Wiegels (Hamburg).
The organising committee - Michele Cianci, Johanna Kallio, Ronan Keegan, Eugene
Krissinel, Victor Lamzin, Andrey Lebedev, Thomas Schneider
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electronically via the link
http://www.embl-hamburg.de/training/events/2012/ESMAX-12/index.html
The deadline for applications is October 1st, 2012.
The organising committee - Michele Cianci, Johanna Kallio, Ronan Keegan, Eugene
Krissinel, Victor Lamzin, Andrey Lebedev, Thomas Schneider
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of ccp4i window.
If this does not work for you for any reason, please (re-)read update manual
for details. If that does not help as well, please write to us.
Thank you for using CCP4,
Eugene Krissinel.
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