Re: Taverna developer wiki?

2016-02-17 Thread Gale Naylor
gt; wrote: > > Now at https://cwiki.apache.org/confluence/display/TAVERNADEV > > > > On 17 February 2016 at 01:32, Gale Naylor > wrote: > >> Sounds good. Thanks. > >> > >> On Tue, Feb 16, 2016 at 5:26 PM Stian Soiland-Reyes > >>

Re: Our publication on Taverna workflows for bibliometrics

2016-02-17 Thread Gale Naylor
At what point do you want to add papers to the References page? Should I add this one now, with a notation that it's been "accepted for publication," or some other status indicator? Or wait? Thanks. On Wed, Feb 17, 2016 at 10:24 AM wrote: > Dear all, > > We would like to let you know that our p

Re: [jira] [Updated] (TAVERNA-902) Release taverna-language 0.15.1 and taverna-osgi 0.2.1

2016-02-17 Thread Gale Naylor
Looks good. Thanks. On Wed, Feb 17, 2016 at 10:28 AM Stian Soiland-Reyes (JIRA) wrote: > > [ > https://issues.apache.org/jira/browse/TAVERNA-902?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel > ] > > Stian Soiland-Reyes updated TAVERNA-902: > -

Re: Our publication on Taverna workflows for bibliometrics

2016-02-18 Thread Gale Naylor
rkflows for bibliometrics > > I think we should add it right away - it's already published and has a DOI > 10.1007/s11192-016-1885-6 > > It is also open access (yay!) so we don't need to ask for a preprint. > > Are you OK to do the honours..? > > On 17 February 2

Re: Our publication on Taverna workflows for bibliometrics

2016-02-18 Thread Gale Naylor
Done! Please let me know if there are any issues with the reference. On Thu, Feb 18, 2016 at 7:32 AM Gale Naylor wrote: > Yes, I will take care of it. > > On Thu, Feb 18, 2016, 3:53 AM wrote: > >> Thanks! Of course. Please go ahead and add it. :) >> >> >

Re: [DISCUSS] Release taverna-language-0.15.1-incubating-RC2 and taverna-osgi-0.2.1-incubating-RC2

2016-02-18 Thread Gale Naylor
In order to vote, am I expected to have installed and run the software we are releasing? Because I have not yet downloaded/installed anything and will be unable to do so before Monday. (It's on my to-do list..:) On Thu, Feb 18, 2016 at 3:02 AM Stian Soiland-Reyes wrote: > Please us this discussi

Re: [DISCUSS] Release taverna-language-0.15.1-incubating-RC2 and taverna-osgi-0.2.1-incubating-RC2

2016-02-19 Thread Gale Naylor
Thank you for the excellent information, Stian. Apologies for using the wrong thread before! On Fri, Feb 19, 2016, 3:57 AM Stian Soiland-Reyes wrote: > Gale asked what is needed to check before voting. I just realized that > somehow my [DISCUSS] thread was not started, so here it is. (We'll > t

Re: [CANCELLED] [VOTE] Release taverna-language-0.15.1-incubating-RC4 and taverna-osgi-0.2.1-incubating-RC4

2016-02-25 Thread Gale Naylor
I hope I'll be up-to-speed in time to participate in the next release! On Wed, Feb 24, 2016, 11:15 PM Stian Soiland-Reyes wrote: > Thanks to all who tested this release candidate and provided feedback in > the DISCUSS thread?! > > I'm sorry to be CANCELLING this vote, as TAVERNA-918 still preven

Re: [DISCUSS] Release Candidate 5 of taverna-language-0.15.1 and taverna-osgi-0.2.1

2016-02-27 Thread Gale Naylor
FYI: The sha512sum got cut off for taverna-maven-parent. On Sat, Feb 27, 2016 at 4:03 PM Dmitry wrote: > Master. > > Going to try RC5. > > Dmitry > > On 2/28/2016 12:56 AM, Stian Soiland-Reyes wrote: > > Thanks! Do you mean the tag 0.15.1-incubating-RC5 (0.15.1-incubating) > > or master (which i

Re: [DISCUSS] Release Candidate 5 of taverna-language-0.15.1 and taverna-osgi-0.2.1

2016-02-28 Thread Gale Naylor
Thank you very much for the details, Andy. I'm doing my best to come up to speed on all this. A question: In looking at the LICENSE files, and the Apache documentation ( http://www.apache.org/legal/src-headers.html#notice), I'm wondering about the Taverna Language License, which contains several c

Re: [DISCUSS] Release Candidate 5 of taverna-language-0.15.1 and taverna-osgi-0.2.1

2016-02-28 Thread Gale Naylor
On Sun, Feb 28, 2016 at 2:54 PM Gale Naylor wrote: > Thank you very much for the details, Andy. I'm doing my best to come up to > speed on all this. > > A question: > In looking at the LICENSE files, and the Apache documentation ( > http://www.apache.org/legal/src-headers.h

Re: [DISCUSS] Release Candidate 5 of taverna-language-0.15.1 and taverna-osgi-0.2.1

2016-02-28 Thread Gale Naylor
well as the Open-document (robundle) OASIS license/notification. Thanks, Gale On Sun, Feb 28, 2016 at 3:02 PM Gale Naylor wrote: > RE: LICENSES > Now I've come across this set of statements: "These third party notices > vary from license to license. Apache releases should contain a

Re: Draft March 2016 incubator report for Taverna

2016-02-29 Thread Gale Naylor
Looks good to me. On Mon, Feb 29, 2016 at 4:07 AM Stian Soiland-Reyes wrote: > Thanks, Ian! > > I've added them (and my draft) to > https://wiki.apache.org/incubator/March2016 > > > I don't think we need to comment on the copyright review thread, that > is just part of normal project development

Re: [DISCUSS] Release Candidate 5 of taverna-language-0.15.1 and taverna-osgi-0.2.1

2016-02-29 Thread Gale Naylor
eve that as we are legally OK against OASIS, and we are still an > incubating project with DISCLAIMER, this policy breach should not be a > blocker for this release - but it would have to be sorted before the > first proper ASF release of Taverna Language. > > Other views? Mentors? >

Re: [DISCUSS] Release Candidate 5 of taverna-language-0.15.1 and taverna-osgi-0.2.1

2016-03-01 Thread Gale Naylor
Thank you, Stian! Some of my questions I figured out today, but some I did not, so I very much appreciate the hints and instructions. On Tue, Mar 1, 2016 at 2:28 PM Stian Soiland-Reyes wrote: > Thanks for reviewing! > > > > (1) How do I verify that the commit id in the downloaded files matches

Re: Documenting release testing?

2016-03-01 Thread Gale Naylor
te for > http://incubator.apache.org/guides/releasemanagement.html -- there > would be many differences of opinions! > > BTW, all incubator committers can contribute to improve the Incubator > site as well using https://cms.apache.org/incubator/ - just be careful > about policy documents. >

Re: [VOTE] Release taverna-language-0.15.1-incubating-RC5 and taverna-osgi-0.2.1-incubating-RC5

2016-03-01 Thread Gale Naylor
+0.8 because I have some questions (see numbered items below) Windows 10, 64-bit Java 8 update 73 (build 1.8.0_73-b02) Maven 3.3.9 Checksums and PGP signatures: - md5 good (parent, language, and osgi) - sha1 good (parent, language, and osgi) - asc good (parent, language, and osgi) Build, includi

Re: [DISCUSS] Release Candidate 5 of taverna-language-0.15.1 and taverna-osgi-0.2.1

2016-03-02 Thread Gale Naylor
n suggested we > propose updating the 'official' apache release page - sounds like a good > idea - but I think we could add it to the taverna pages first and then > maybe send a link to it to the (I don't know) incubator list to gauge > interest. > > Cheers, > >

Re: [DISCUSS] Release Candidate 5 of taverna-language-0.15.1 and taverna-osgi-0.2.1

2016-03-02 Thread Gale Naylor
ewhere. Stian suggested we > > propose updating the 'official' apache release page - sounds like a good > > idea - but I think we could add it to the taverna pages first and then > > maybe send a link to it to the (I don't know) incubator list to gauge &g

Re: [DISCUSS] Release Candidate 5 of taverna-language-0.15.1 and taverna-osgi-0.2.1

2016-03-02 Thread Gale Naylor
ricks" where they fit. (and then we can > remove the more evil ones :)) > > On 2 March 2016 at 17:42, Gale Naylor wrote: > > I like the "what do i do now" section. What if we develop it in the wiki > > and then, when we're happy with it, migrate it to the commu

Re: [DISCUSS] Release Candidate 5 of taverna-language-0.15.1 and taverna-osgi-0.2.1

2016-03-02 Thread Gale Naylor
Wed, Mar 2, 2016 at 11:04 AM Gale Naylor wrote: > Definitely. I'm already working on an offline document. I hope to have > something on the wiki by EOD today (PST). > > On Wed, Mar 2, 2016, 10:34 AM Stian Soiland-Reyes > wrote: > >> +1! Would you be OK to start?

Re: [jira] [Updated] (TAVERNA-926) Category B licenses in taverna-databundle

2016-03-06 Thread Gale Naylor
I have started adding JIRA issues for the category B licenses in Taverna RC5. I hope to finish by the end-of-day, or possibly tomorrow (California time). On Sun, Mar 6, 2016 at 9:31 AM Gale Naylor (JIRA) wrote: > > [ > https://issues.apache.org/jira/browse/TAVERNA

Re: [jira] [Updated] (TAVERNA-926) Category B licenses in taverna-databundle

2016-03-06 Thread Gale Naylor
CE. The w3c ones are similar to the OASIS one, as > they require no modifications. > > Similarly if we have Creative Commons Share Alike, then perhaps we can't > "share Alike" if we relicense as Apache License? I'm not so sure about this > one. >

Re: [jira] [Updated] (TAVERNA-926) Category B licenses in taverna-databundle

2016-03-06 Thread Gale Naylor
? ( http://opensource.org/licenses/W3C.php) We need to get a lawyer as a committer. ;-) I'll take a look at the other JIRAs now. Gale On Sun, Mar 6, 2016 at 11:04 AM Gale Naylor wrote: > Okay. I'll look at this more later. There were quite a few (more) GNU/GPL > licenses listed in the top-le

Fwd: [jira] [Updated] (TAVERNA-926) Category B licenses in taverna-databundle

2016-03-06 Thread Gale Naylor
Apologies for not cc-ing you earlier, but I think you can see the thread below. -- Forwarded message - From: Gale Naylor Date: Sun, Mar 6, 2016 at 4:53 PM Subject: Re: [jira] [Updated] (TAVERNA-926) Category B licenses in taverna-databundle To: ** Jackson ** It looks like we

Re: Taverna 0.15.1 release licensing issue

2016-03-06 Thread Gale Naylor
Can we put the release on hold for a few days while we debate the options, or are we up against a deadline? On Sun, Mar 6, 2016 at 4:53 PM Stian Soiland-Reyes wrote: > On 5 Mar 2016 23:30, "Justin Mclean" wrote: > > > > Sorry but I just voted -1 on your release on the incubator list due to > li

Re: [jira] [Commented] (TAVERNA-926) Category B licenses in taverna-databundle

2016-03-06 Thread Gale Naylor
> > > Key: TAVERNA-926 > > URL: https://issues.apache.org/jira/browse/TAVERNA-926 > > Project: Apache Taverna > > Issue Type: Bug > > Components: Taverna Language > >Affects Versions: lang

Re: [jira] [Commented] (TAVERNA-926) Category B licenses in taverna-databundle

2016-03-07 Thread Gale Naylor
dual license if they are now > single-license. > > Could you check if this is the case inside also the JAR files of the > latest Jackson releases, as I think there has been a new major release > since the one we use? > > > On 7 March 2016 at 01:55, Gale Naylor wrote: > > Than

Re: [jira] [Commented] (TAVERNA-926) Category B licenses in taverna-databundle

2016-03-08 Thread Gale Naylor
rrent directory by doing 'jar > -xvf myfile.jar' > > Cheers, > > Ian > > On 8 March 2016 at 02:55, Gale Naylor wrote: > > > RE Jackson > > > > >>Jackson is confusing the license plugin, as those JARs themselves > contain > > a LICE

Re: [jira] [Commented] (TAVERNA-926) Category B licenses in taverna-databundle

2016-03-08 Thread Gale Naylor
ocs/api/ http://fasterxml.github.com/jackson-annotations/javadoc/2.7 http://fasterxml.github.com/jackson-core/javadoc/2.7 com.google.code.maven-replacer-plugin replacer process

Re: [jira] [Created] (TAVERNA-933) Upgrade dependency of Jackson to 2.7.0

2016-03-09 Thread Gale Naylor
>>Can we assume [Semantic Versioning|http://semver.org/] ? If so we should be fine. I read the information on the link (sounds very logical), but I'm not sure what "we should be fine" means. We're okay to upgrade to Jackson 2.7.0 in Taverna Language as a bugfix and, therefore, increment the versio

Re: [DISCUSS] Release Candidate 5 of taverna-language-0.15.1 and taverna-osgi-0.2.1

2016-03-09 Thread Gale Naylor
Doesn't this pull request to Upgrade Apache Commons Collections to v3.2.2 also affect Scufl2 API? http://mail-archives.apache.org/mod_mbox/incubator-taverna-dev/201603.mbox/%3Cgit-pr-1-incubator-taverna-server%40git.apache.org%3E On Wed, Mar 2, 2016 at 6:30 PM Gale Naylor wrote: > Draf

Re: Graduation maturity page?

2016-03-10 Thread Gale Naylor
I like it. I'll try to get something started in the next few days. On Thu, Mar 10, 2016 at 3:48 PM Stian Soiland-Reyes wrote: > I like how Groovy used the Project Maturity Model (see below) > > Perhaps we could maintain a similar doc in our wiki, add those > Taverna-specific requirements (e g. C

Re: [jira] [Commented] (TAVERNA-908) Vote for taverna-language/taverna-osgi release on general@incubator

2016-03-11 Thread Gale Naylor
Great! On Fri, Mar 11, 2016 at 6:53 AM Stian Soiland-Reyes (JIRA) wrote: > > [ > https://issues.apache.org/jira/browse/TAVERNA-908?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=15191029#comment-15191029 > ] > > Stian Soiland-Reyes commented on TAVERNA

Re: [jira] [Commented] (TAVERNA-912) Draft and send Release Notes

2016-03-14 Thread Gale Naylor
Looks good! On Mon, Mar 14, 2016, 4:36 AM Stian Soiland-Reyes (JIRA) wrote: > > [ > https://issues.apache.org/jira/browse/TAVERNA-912?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=15193135#comment-15193135 > ] > > Stian Soiland-Reyes commented on TAVE

Re: [jira] [Commented] (TAVERNA-902) Release taverna-language 0.15.1 and taverna-osgi 0.2.1

2016-03-14 Thread Gale Naylor
No, thank you! It's nice to have it all done. You must be glad. On Mar 14, 2016 7:20 AM, "Stian Soiland-Reyes (JIRA)" wrote: > > [ > https://issues.apache.org/jira/browse/TAVERNA-902?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=15193352#comment-151933

Re: [jira] [Commented] (TAVERNA-959) Crypto review and reporting

2016-04-25 Thread Gale Naylor
> > send some details to the US gvt > > > http://www.apache.org/dev/crypto.html#notify. > > > So it's an administrative pain but should not stop Apache Taverna > > including > > > the crytpo code. The bouncy castle links seem to be a download that no > >

Re: Release of Taverna Command Line?

2016-04-25 Thread Gale Naylor
>> It's what we've done so far.. I didn't mean we won't publish to Maven Central - but that we won't try to release the build taverna-commandline-product zip file on dist.apache.org, as that would include lib/*.jar for all of our dependencies. (we would need to propagate their licenses) I'm a lit

Re: Release of Taverna Command Line?

2016-04-25 Thread Gale Naylor
Also, I thought we were going to release taverna-engine and taverna-common-activities before taverna-command-line. I apologize if I missed the discussion on this. Stian, do you have a rough date in mind for the release? Gale On Mon, Apr 25, 2016 at 4:17 PM Gale Naylor wrote: > > >&g

Re: [jira] [Commented] (TAVERNA-959) Crypto review and reporting

2016-04-25 Thread Gale Naylor
Thanks, Stian. I don't think I have the expertise to help with the taverna-mobile and taverna-databundle-viewer questions. On Mon, Apr 25, 2016 at 4:17 PM Stian Soiland-Reyes wrote: > On 25 April 2016 at 23:06, Gale Naylor > wrote: > > You're draft submissions look

Re: Release of Taverna Command Line?

2016-04-26 Thread Gale Naylor
Regarding release order: I was just curious. It sounds logical to release the command line first since it would be helpful for the GSOC students and doesn't depend on taverna-engine or taverna-common-activities. On Tue, Apr 26, 2016 at 9:30 AM Alan Williams wrote: > On 26-Apr-16 17:05, Stian Soi

Re: Release of Taverna Command Line?

2016-04-26 Thread Gale Naylor
uirements: http://www.apache.org/dev/crypto.html On Tue, Apr 26, 2016 at 9:57 AM Gale Naylor wrote: > Regarding release order: I was just curious. It sounds logical to release > the command line first since it would be helpful for the GSOC students and > doesn't depend on taverna-engine

Re: Release of Taverna Command Line?

2016-04-26 Thread Gale Naylor
pr 26, 2016 at 11:08 AM Gale Naylor wrote: > Regarding the US Export declaration issue: > If I can summarize what Stian and Ian have said (please correct me if I'm > wrong), there are two issues. The first issue is that several Taverna > components use a credential manager that

Re: Release of Taverna Command Line?

2016-04-26 Thread Gale Naylor
Credential Manager. Does this usage of the Derby server require an addition to the Export XML file? On Tue, Apr 26, 2016 at 11:50 AM Gale Naylor wrote: > Taverna Commandline Documentation: > > What needs to change in the 2.x documentation? > https://taverna.incubator.apache.org/docu

Re: How does the Taverna Engine run a workflow?

2016-05-04 Thread Gale Naylor
Thanks for the doc update, Stian! On Wed, May 4, 2016 at 10:21 AM Stian Soiland-Reyes wrote: > I tried to document the modules of Taverna Engine > > https://github.com/apache/incubator-taverna-engine/#modules > > and added a walk-thru of how these modules interact when running a > workflow throu

Re: Release of Taverna Command Line?

2016-05-06 Thread Gale Naylor
In preparation for the release, I cleaned up the "How to Review a Release" wiki.( https://cwiki.apache.org/confluence/display/TAVERNADEV/2016-03+Apache+Taverna%3A+How+to+Review+a+Release+and+Vote ). I'm wondering what changes in a source-only release. For example, is #10 ignored? Right now, the i

Re: [GitHub] incubator-taverna-engine pull request: Update README.md - Minor ed...

2016-05-06 Thread Gale Naylor
incubator-taverna-engine/taverna-reference-types/README.md On Fri, May 6, 2016 at 4:48 PM galejwnaylor wrote: > GitHub user galejwnaylor opened a pull request: > > https://github.com/apache/incubator-taverna-engine/pull/3 > > Update README.md - Minor edits, one dead link > > taverna.

Re: Release of Taverna Command Line?

2016-05-07 Thread Gale Naylor
b.com/apache/incubator-taverna-language/blob/master/taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/api/core/Processor.java Lines 149 and 151: Refer to http://ns.taverna.org.uk/2010 --- is this correct? On Fri, May 6, 2016 at 11:31 AM Gale Naylor wrote: > In preparation for the re

Re: Draft download pages

2016-05-09 Thread Gale Naylor
I am having trouble editing the staged versions of the engine, common-activities, and commandline download pages. I can't find them in the download directory: https://cms.apache.org/taverna/wc/browse/gnaylor-C4CSQm/trunk/content/download/ Is there something I'm missing, or something special I need

Re: Draft download pages

2016-05-09 Thread Gale Naylor
so if you come back 3 weeks later it will stay at the version it > had at your last edit! > > On 9 May 2016 at 19:02, Gale Naylor wrote: > > I am having trouble editing the staged versions of the engine, > > common-activities, and commandline download pages. I can't find t

Re: Draft download pages

2016-05-09 Thread Gale Naylor
ows ... I made some minor edits to the three download pages. I changed the title of the command line page to say "Download" and match the other two pages. On Mon, May 9, 2016 at 2:59 PM Gale Naylor wrote: > Right! I forgot about that. Thanks for the reminder! > > On Mo

Pull Request

2016-05-11 Thread Gale Naylor
It looks like I still have an open pull request: https://github.com/apache/incubator-taverna-commandline/pull/1 Gale

Re: Pull Request

2016-05-12 Thread Gale Naylor
how I did > it > >> before! What is the best way to merge pull requests? Basically we want > to > >> keep the provenance while adding a "This closes #1" type message. I > don't > >> think we have anything on the site about how to do it. > >> > >>

Re: Draft download pages

2016-05-12 Thread Gale Naylor
this correct? To quote Ian, Cheers! Gale On Thu, May 12, 2016 at 3:18 AM Stian Soiland-Reyes wrote: > On 10 May 2016 at 01:03, Gale Naylor wrote: > > Is there a difference between "Taverna Command Line Tool" and "Taverna > > Command Line"? It seems sometimes o

Re: Pull Request

2016-05-12 Thread Gale Naylor
h anyone else > reviewing and accepting my GSOC student's pull requests if they get there > first! > > On 12 May 2016 2:43 p.m., "Gale Naylor" > wrote: > > > A couple of questions regarding merging pull requests: Who is able to > > merge? Is the pull reque

Re: New Apache list archives

2016-05-13 Thread Gale Naylor
I agree. I vote for the Apache list, too. On Fri, May 13, 2016, 9:01 AM alaninmcr wrote: > On 13/05/2016 16:21, Stian Soiland-Reyes wrote: > > https://lists.apache.org/list.html?taverna.apache.org > > > > Looks pretty nice! > > > > perhaps we should link to them from our web page instead of (or

Possible changes to groupId, etc?

2016-05-13 Thread Gale Naylor
I buried this in my last "Download Pages" reply, but I wanted to make sure you all saw it and could comment. --- Changes to git repo/groupId? As far as the GIt repo and groupId names for the Command-line Tool are concerned, I ag

Re: Possible changes to groupId, etc?

2016-05-15 Thread Gale Naylor
o names / groupIds. Gale On Sat, May 14, 2016 at 2:36 AM Stian Soiland-Reyes wrote: > On 13 May 2016 6:15 p.m., "Gale Naylor" > wrote: > > > > I buried this in my last "Download Pages" reply, but I wanted to make > sure &

Re: "Potato Man" activity icon: What is the license?

2016-05-15 Thread Gale Naylor
Is this resource used? I did a search of Engine in Eclipse, but did not find any other instances of exampleIcon. How is this used? If you can give me some direction, and any requirements, I might be able to create an icon. On Sun, May 15, 2016 at 11:20 AM Alan Williams wrote: > On 15-May-16 19

Re: Trying to invoke docker image

2016-05-16 Thread Gale Naylor
Just make sure you also send a message to the dev@taverna mailing list with a link to your blog post or wiki article. Thanks! On Mon, May 16, 2016, 5:36 AM Stian Soiland-Reyes wrote: > Hi! Thanks for your update. > > IT would be good if you could take some notes, say in a blog or in the > Tavern

Re: "Potato Man" activity icon: What is the license?

2016-05-16 Thread Gale Naylor
t; https://creativecommons.org/publicdomain/zero/1.0/ license to the > corresponding .xcf. > > > > > On 16 May 2016 at 00:10, Gale Naylor wrote: > > Is this resource used? I did a search of Engine in Eclipse, but did not > > find any other instances of exampleIcon. >

Re: [jira] [Commented] (TAVERNA-959) Crypto review and reporting

2016-05-19 Thread Gale Naylor
Thanks, Stian! On Thu, May 19, 2016, 3:18 AM Stian Soiland-Reyes (JIRA) wrote: > > [ > https://issues.apache.org/jira/browse/TAVERNA-959?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=15290845#comment-15290845 > ] > > Stian Soiland-Reyes commented on T

Re: Release of Taverna Command Line?

2016-05-21 Thread Gale Naylor
BUILD FAILURE? I'm not sure if I'm doing this correctly, but I downloaded the taverna-engine repository files (5/21/16 7:40 AM PST) as a zip, unzipped them, and then ran mvn -e clean install. I got a build failure: Failed to execute goal org.apache.maven.plugins:maven-archetype-plugin:2.4:integrat

Re: Release of Taverna Command Line?

2016-05-21 Thread Gale Naylor
(org.apache.taverna.reference.impl.ReferenceSetAugmentorImpl). log4j:WARN Please initialize the log4j system properly. ... and quite a few Javadoc errors, but the taverna-common-activities build succeeded. On Sat, May 21, 2016 at 7:54 AM Gale Naylor wrote: > BUILD FAILURE? > > I'm not sure if I'm doing th

Re: Release of Taverna Command Line?

2016-05-23 Thread Gale Naylor
Yes, sorry - I'm at a conference and didn't check email yesterday. FYI I'm running mvn 3.3.9. I'll try it again. On Sun, May 22, 2016 at 10:39 AM Stian Soiland-Reyes wrote: > I added the explicit plugin dependency as described in ARCHETYPE-488 - > could you see if it works now on your setup, Gal

Re: Release of Taverna Command Line?

2016-05-23 Thread Gale Naylor
R] For more information about the errors and possible solutions, please read the following articles: [ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoExecutionException [ERROR] [ERROR] After correcting the problems, you can resume the build with the command [ERROR] mvn -rf :t

Re: Possible changes to groupId, etc?

2016-05-26 Thread Gale Naylor
Excellent! Thanks, Stian. I am working on the Web pages. On Thu, May 26, 2016, 9:15 AM Stian Soiland-Reyes wrote: > Done: > > > https://github.com/apache/incubator-taverna-commandline/commit/b096abbe15ee90dbd5f9c28bb56a3ed64f6b91e6 > > [INFO] Apache Taverna Command-line Tool ...

Re: Starting command line 3.1.0 release process

2016-05-26 Thread Gale Naylor
What about the 2nd taverna-engine build failure? Has that been resolved? http://apache-taverna-dev.markmail.org/message/olyip2p5rioghodm?q=+from:%22Gale+Naylor%22&page=1 On Thu, May 26, 2016, 9:08 AM Stian Soiland-Reyes wrote: > OK, so now that the US export thingie has been sent off, I'm back

Edited Command-line Tool Web Pages

2016-05-26 Thread Gale Naylor
Hello, all. I edited the Command-line Tool web pages (to fix the tool name, etc.) and they are staged in the CMS. Please review: (A) Download page: http://taverna.staging.apache.org/download/commandline/ (B) Documentation page: http://taverna.staging.apache.org/documentation/command-line/ I added

Re: Release of Taverna Command Line?

2016-05-27 Thread Gale Naylor
project can > > become a bit long for Windows. (It's OK as long as you are inside > > Java, you are allowed to make and use "too long" paths - but it breaks > > as soon as you then try to start a sub-process as the inner maven fork > > would do) > >

Re: Release of Taverna Command Line?

2016-05-27 Thread Gale Naylor
gin:2.5.4:bundle (default-bundle) @ taverna-workflowmodel-impl --- [WARNING] Bundle org.apache.taverna.engine:taverna-workflowmodel-impl:bundle:3.1.0-incubating-SNAPSHOT : Export org.apache.taverna.workflowmodel.impl, has 1, private references [org.apache.taverna.workflowmodel.processor.dispatch.impl], On

Re: Release of Taverna Command Line?

2016-05-27 Thread Gale Naylor
I also got several JavaDoc warnings. I'll try to slog through them and add them to JIRA in the next week or so. Gale On Fri, May 27, 2016 at 8:42 AM Gale Naylor wrote: > Thanks for the links, Alan! > > I'm happy to say the entire engine project now builds successfully. >

Re: Podling Report Reminder - June 2016

2016-05-30 Thread Gale Naylor
Looks good! The only comment I have is that the mailing list stats are in chronological order and the user stats are in reverse chronological order. It may be easier to read if they are both the same, unless there is a reason why they are reported this way. Thank you! You answered the question I w

Re: Starting command line 3.1.0 release process

2016-05-31 Thread Gale Naylor
Thanks for taking care of all this. I like the wiki page. On Mon, May 30, 2016, 4:40 PM Stian Soiland-Reyes wrote: > On 27 May 2016 at 10:05, Stian Soiland-Reyes wrote: > > No, I see that compile problem was not fixed.. sorry. I'll have a go > > in Windows if I can find out what's going on. > >

Re: [VOTE] Release Apache Taverna Command-line Tool 3.1.0-incubating RC2

2016-06-01 Thread Gale Naylor
Starting the review process... -- UP-FRONT CHECKS -- The MD5 checksums in the [VOTE] email are the same as the SHA1 checksums. I'm using the downloaded MD5 and SHA-1. (Question) I'm curious what r13865 means: https:

Re: [VOTE] Release Apache Taverna Command-line Tool 3.1.0-incubating RC2

2016-06-02 Thread Gale Naylor
java files in /src/main/java/org/apache/taverna/provenance/lineageservice/types/ Gale On Wed, Jun 1, 2016 at 6:16 PM Gale Naylor wrote: > Starting the review process... > > -- > UP-FRONT CHECKS > -

Re: [VOTE] Release Apache Taverna Command-line Tool 3.1.0-incubating RC2

2016-06-02 Thread Gale Naylor
s/ net.sf.taverna.t2.workflowmodel.health.HealthChecker Well. That was mind-numbing. Whew! Glad I'm done with that part. Gale On Thu, Jun 2, 2016 at 9:30 AM Alan Williams wrote: > On 02-Jun-16 17:01, Gale Naylor wrote: > > Hello, > > > > I am finding University

Re: [VOTE] Release Apache Taverna Command-line Tool 3.1.0-incubating RC2

2016-06-02 Thread Gale Naylor
There is no #3. I just forgot to adjust the numbers. On Thu, Jun 2, 2016 at 10:56 AM Gale Naylor wrote: > I finished reviewing all the file headers. Here is what I found: > > --- > Non-ASF Copyrights > --- > > 1) University of Manchester

Re: [DISCUSS] Release candidate 2 of Command-line Tool 3.1.0-incubating

2016-06-02 Thread Gale Naylor
I'm so sorry - I've been replying to the VOTE thread. I'll copy my comments here: -- UP-FRONT CHECKS -- The MD5 checksums in the [VOTE] email are the same as the SHA1 checksums. I'm using the downloaded MD5 and SHA-1.

Re: [DISCUSS] Release candidate 2 of Command-line Tool 3.1.0-incubating

2016-06-02 Thread Gale Naylor
FO] [WARNING] Bundle : org.springframework:org.springframework.core:jar:3.0.5.RELEASE has unresolved package dependencies: [INFO] [WARNING] org.apache.commons.logging;version="[1.1.1,2.0.0)" [INFO] [WARNING] Bundle : org.springframework:org.springframework.transaction:jar:3.0.5.RELEASE h

Re: Taverna Mobile Application

2016-06-02 Thread Gale Naylor
Hi Rajan, The dev@taverna mailing list is intended to collect all development work, including things like your suggested fixes to the Taverna Mobile App! Can you please include your suggestions in an email to the dev list? (A reply to this email would make sense.) Thanks! Gale On Thu, Jun 2, 2

Re: Taverna Mobile Application

2016-06-03 Thread Gale Naylor
st making a util/ConnectionInfo something class to use anywhere >you need to check internet connection. >6. > >What about if the loading data failed from the internet. Implement >showResponseError. > > > Thanks > > > > > On Fri, Jun 3, 201

Re: [DISCUSS] Release candidate 2 of Command-line Tool 3.1.0-incubating

2016-06-04 Thread Gale Naylor
should NOT be included in generated ## code from the archetype Just wondering what this is. Does it need to be at the end of all License headers? Thanks, Gale On Fri, Jun 3, 2016 at 8:39 AM Stian Soiland-Reyes wrote: > On 2 June 2016 at 19:50, Gale Naylor wrote: > &

Direct-editing by Committers

2016-06-04 Thread Gale Naylor
I was going to add the license headers to the 2 taverna-engine README files (taverna-prov/reADME.md and taverna-reference-types/reADME.md), but I wasn't sure of the procedure for editing directly. I found the link, but wasn't sure how to edit without effecting what someone else is doing. Do you

Re: Direct-editing by Committers

2016-06-05 Thread Gale Naylor
Okay. Thank you! On Sun, Jun 5, 2016 at 3:05 AM Alan Williams wrote: > On 04-Jun-16 17:33, Gale Naylor wrote: > > I was going to add the license headers to the 2 taverna-engine README > > files > > (taverna-prov/reADME.md and taverna-reference-types/reADME.md), > &g

Re: [DISCUSS] The third RC of Taverna Command Line 3.1.0

2016-06-06 Thread Gale Naylor
Fingers crossed for RC3! I will be out of town for a couple of days, but will review and build when I return. On Mon, Jun 6, 2016, 7:31 AM Stian Soiland-Reyes wrote: > This is the discussion thread for Command Line 3.1.0 RC3. > > You can place your votes in the corresponding [VOTE] thread: > >

Re: Code Analysis Tools Implementation

2016-06-09 Thread Gale Naylor
Hi Rajan, You should be able to add a wiki now. Please let me know if you have any difficulties. Thanks, Gale On Thu, Jun 9, 2016 at 4:08 AM Rajan Maurya wrote: > Hi, > > I sign-up here : https://cwiki.apache.org/confluence/signup.action > > my username : therajanmaurya > > Thanks. > > > On We

Re: Code Analysis Tools Implementation

2016-06-09 Thread Gale Naylor
You should be all set, Sagar! On Thu, Jun 9, 2016 at 10:01 AM Sagar wrote: > Hi Gale, > > I sign-up here : https://cwiki.apache.org/confluence/signup.action > > my username : sagar15795 > > Thanks. > Sagar > > On Thu, Jun 9, 2016 at 8:00 PM, Gale Naylor > w

Re: Code Analysis Tools Implementation

2016-06-09 Thread Gale Naylor
I created a GSOC 2016 Apache Taverna Mobile parent page. You can add wiki page(s) as child pages. Let me know if you have any problems. Gale On Thu, Jun 9, 2016 at 10:27 AM Gale Naylor wrote: > You should be all set, Sagar! > > On Thu, Jun 9, 2016 at 10:01 AM Sagar wrote: >

Re: Code Analysis Tools Implementation

2016-06-09 Thread Gale Naylor
If you only need one page, go ahead and use this one: https://cwiki.apache.org/confluence/display/TAVERNADEV/GSOC+2016+Apache+Taverna+Mobile If you need multiple pages, go ahead and create them - we can always sort out the organization later. On Thu, Jun 9, 2016 at 10:54 AM Gale Naylor wrote

Added Structure to Confluence Wiki Pages

2016-06-09 Thread Gale Naylor
I organized the wiki pages so that all the GSOC-related pages are under a parent page called GSOC 2016, which serves as a table of contents. I also added a parent page called Releases, which has all the release-related pages, and acts as a table of contents. Does this seem reasonable? Gale

Re: [DISCUSS] Release candidate 2 of Command-line Tool 3.1.0-incubating

2016-06-09 Thread Gale Naylor
Yes, I think we can do the package.html file headers after the release. On Mon, Jun 6, 2016 at 7:27 AM Stian Soiland-Reyes wrote: > On 4 June 2016 at 17:30, Gale Naylor wrote: > > Thanks for the explanations, Stian. A vote-email script might not be a > bad > > idea! It cert

Re: [DISCUSS] The third RC of Taverna Command Line 3.1.0

2016-06-09 Thread Gale Naylor
taverna-engine, taverna-common-activities, and taverna-commandline all build successfully on my Windows 10 machine running Maven 3.3.9 and Java 1.8.0_91. I do not have time to perform a detailed check of the source headers for the common-activities or commandline files at this time, or check the d

Re: [DISCUSS] The third RC of Taverna Command Line 3.1.0

2016-06-13 Thread Gale Naylor
I do not think any of the issues I raised should stop the release. I agree to adding the non-Javadoc warnings individually to JIRA. There are a lot of Javadoc warnings, can we have one JIRA issue for each component that collects all of the Javadoc warnings? I'm ready to [VOTE]. On Mon, Jun 13, 20

Re: [] Release Apache Taverna Command-line Tool 3.1.0-incubating RC3

2016-06-13 Thread Gale Naylor
+1 taverna-engine, taverna-common-activities, and taverna-commandline all build successfully on my Windows 10 machine running Maven 3.3.9 and Java 1.8.0_91. Add the following warnings to JIRA: --- Warnings (other than Javadoc warnings) - Individual JIRA issues

Re: Checkstyle/Findbugs LGPL - does it matter

2016-06-15 Thread Gale Naylor
If they are not part of the distribution, where are they? Are they in the repositories? On Wed, Jun 15, 2016 at 11:04 AM Donal Fellows < donal.k.fell...@manchester.ac.uk> wrote: > The plugins should be fine. They are not required to build anything (if > anyone is super-worried, they can be put in

Re: [RESULT] [VOTE] Release Apache Taverna Command-line Tool 3.1.0-incubating RC3

2016-06-30 Thread Gale Naylor
Great! On Thu, Jun 30, 2016, 4:25 AM Stian Soiland-Reyes wrote: > On 17 June 2016 at 14:26, Stian Soiland-Reyes wrote: > > The Taverna PPMC has successfully voted for the source release of > > > > Apache Taverna Engine 3.1.0-incubating > > Apache Taverna Common Activities 2.1.0-incubating >

Re: draft release notes for Taverna cmd line 3.1.0

2016-07-01 Thread Gale Naylor
Hi Alan, You should have access to editing (and everything else) now. Gale On Fri, Jul 1, 2016 at 5:07 AM Alan Williams wrote: > On 01-Jul-16 12:51, Stian Soiland-Reyes wrote: > > I have made live the download pages for 3.1.0 and friends: > > https://taverna.incubator.apache.org/download/comma

Re: draft release notes for Taverna cmd line 3.1.0

2016-07-01 Thread Gale Naylor
Hi Stian, In the release notes, do you want the release date to be 6/30 or 7/1? Gale On Fri, Jul 1, 2016 at 6:21 AM Gale Naylor wrote: > Hi Alan, > > You should have access to editing (and everything else) now. > > Gale > > On Fri, Jul 1, 2016 at 5:07 AM Alan Williams &g

Re: draft release notes for Taverna cmd line 3.1.0

2016-07-01 Thread Gale Naylor
g/ > > it will actually say 2016-06-06 as that is when the RC3 was uploaded. > > > and Maven will say 2016-06-30: > > https://repo1.maven.org/maven2/org/apache/taverna/engine/ > > > > Shall we just say 2016-07-01 as today is when we "Publish" publically? &

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