Re: [easybuild] get_software_root software root for binutils was not found in environment

Dear Roc, I think your problem is that you have a binutils/2.26 already available on your system, and 'eb' is assuming it was installed with EasyBuild... All modules generated with EasyBuild define an environment variable like $EBROOT, where is the software name in capitals. EasyBuild

Re: [easybuild] next EasyBuild conf call: Wed Sept 27th, 5pm CEST

notes are available at https://github.com/easybuilders/easybuild/wiki/Conference-call-notes-20170927 next conf call is planned for Oct 11th, see also https://plus.google.com/events/c28h4u63qdhlk0pol10k67qt8ig On 26/09/2017 20:53, Kenneth Hoste wrote: Dear EasyBuilders, The next EasyBuild

Re: [easybuild] about module-file and module-file template(s)?

Dear Espen On 22/09/2017 11:22, Espen Tangen wrote: What would be the appropiate way to add a certain design and add-ons into the modulefile part of EB? For instance, commercial codes like Schrodinger and Gaussian has major pontentials to be rather straight forward as EB configs part from

Re: [easybuild] Error while compiling CMake

Dear Satish, Issues like this have been reported before, they tend to occur when your using a shared filesystem like GPFS as the location for the build directory. See for example https://lists.ugent.be/wws/arc/easybuild/2017-06/msg00044.html . It's still unclear why this happens, but you can

[easybuild] next EasyBuild conf call: Wed Sept 27th, 5pm CEST

Dear EasyBuilders, The next EasyBuild conf call is planned for today, Wed Sept 27th 2017, at 5pm CEST, see also https://plus.google.com/events/c6grn2thsi658et394kqleliiv0 . Current agenda: * outlook to EasyBuild v3.4.1 or v3.5.0   * bug fixes   * minor enhancements incl. stable --trace,

Re: [easybuild] Mesa and vglrun

Dear Alexi, On 22/09/2017 13:39, alexi.riv...@chalmers.se wrote: Hi, I've ran into some issues when it comes to compiling software where I want to use 3D-acceleration. Compiling with Mesa seems to be the general choice when looking through existing easyconfigs, but this makes it impossible for

Re: [easybuild] [ANN] EasyBuild v3.4.0

packages. While configs of older versions don't use the checksum option at all. Best, Gizo On Monday, September 11, 2017 09:49 CEST, Kenneth Hoste <kenneth.ho...@ugent.be> wrote: Dear EasyBuilders, I'm happy to announce the release of EasyBuild version 3.4.0 [1]. You g

Re: [easybuild] MariaDB-10.1.13-intel-2016a.eb

Hi Joachim, On 20/09/2017 17:52, Joachim Hein wrote: On 20 Sep 2017, at 17:45, Kenneth Hoste <kenneth.ho...@ugent.be <mailto:kenneth.ho...@ugent.be>> wrote: Hi Joachim, It's not entirely clear, but I *think* that Lmod itself gets broken by the "module load jemalloc/4.1

Re: [easybuild] MariaDB-10.1.13-intel-2016a.eb

ps://github.com/TACC/Lmod/blob/master/README.md, Lmod 6.6 or more recent should suffice. regards, Kenneth On 20/09/2017 17:28, Joachim Hein wrote: Attached as requested.  Thanks for looking into this. Best wishes    Joachim On 20 Sep 2017, at 14:49, Kenneth Hoste <kenneth.ho...@ugent

Re: [easybuild] Boost 1.64.0 and DBD-mysql

Hi Joachim, On 19/09/2017 16:04, Joachim Hein wrote: HI I am trying to build DBD-mysql-4.042-intel-2017a-Perl-5.24.1.eb which depends on Boost 1.64.0, which suffers from (part of) the get_data.hpp issue, which we discussed in May. Can you provide a reference here (issue, link to mail in

Re: [easybuild] Perl in GCCcore?

On 15 Sep 2017, at 15:19, Jack Perdue <j-per...@tamu.edu> wrote: On 09/15/2017 07:21 AM, Kenneth Hoste wrote: Dear Joachim, On 08/09/2017 19:12, Joachim Hein wrote: Hi For building git, it seems I require Perl. I think git would sit nicely in GCCcore (instead of foss/intel). Is there a reason w

Re: [easybuild] EB 3.4 build of foss-2017b fails due to dependencies

On 18/09/2017 10:06, Åke Sandgren wrote: Known probles as of this weekend or thereabouts. https://github.com/easybuilders/easybuild-easyconfigs/pull/5132 I think this change was made mid-August actually... Ole: you can dance around this problem for now using "eb --ignore-osdeps" to instruct

Re: [easybuild] Perl in GCCcore?

Dear Joachim, On 08/09/2017 19:12, Joachim Hein wrote: Hi For building git, it seems I require Perl. I think git would sit nicely in GCCcore (instead of foss/intel). Is there a reason why the new Perl 5.26.0 sits in intel/2017b or foss/2017b instead of GCCcore 6.4.0? I assume if I build a

Re: [easybuild] next EasyBuild conf call: Wed Sept 13th (*today*), 5pm CEST

Notes are available at https://github.com/easybuilders/easybuild/wiki/Conference-call-notes-20170913 Next conf call is planned for Wed Sept 27th 2017, see https://plus.google.com/events/c6grn2thsi658et394kqleliiv0 . On 13/09/2017 08:03, Kenneth Hoste wrote: Dear EasyBuilders, The next

[easybuild] next EasyBuild conf call: Wed Sept 13th (*today*), 5pm CEST

Dear EasyBuilders, The next EasyBuild conf call is planned for today, Wed Sept 13th 2017, at 5pm CEST, see also https://plus.google.com/events/cubocbv6l8tg0tr9ecn235vp0r4 . Current agenda: * Python in GCCcore, to be used as build dependency * feedback on --trace output * labels for issues &

[easybuild] [ANN] EasyBuild v3.4.0

Dear EasyBuilders, I'm happy to announce the release of EasyBuild version 3.4.0 [1]. You guessed it: this is the best EasyBuild release ever! Highlights include:     * support for backing up existing modules via --backup-modules before they are regenerated [2]         * this is enabled

Re: [easybuild] MANPATH issue

Hi Pablo, That's actually something for Lmod to worry about. man considers the default location for manpages if there's an empty entry in $MANPATH, for example ":/scicore/soft/apps/GCC/4.8.4/share/man". It's Lmod's job to make sure the empty entry stays there... See also

Re: [easybuild] xorg-macros error install

from http://xorg.freedesktop.org/archive/individual/util/, which is what you did I think, where the 'pre-processed' source tarballs are that already include a 'configure' script (and don't include autogen.sh anymore)... regards, Kenneth 2017-09-05 15:37 GMT-03:00 Kenneth Hoste <kenneth

Re: [easybuild] xorg-macros error install

Dear Ernesto, Where did you download the source tarball from? Should be this: $ sha256sum util-macros-1.19.0.tar.gz 9cca766593cc0ce6bffe1e503127e047aafce61891e4de26b591c86f603af623 util-macros-1.19.0.tar.gz regards, Kenneth On 05/09/2017 20:31, Ernesto Eduardo Diaz Conde wrote: hello

Re: [easybuild] installation error

Dear Ernesto, It seems that PyPI is not accessible on this system, maybe due to proxy/firewall issues? As an alternative, you can try the offline bootstrap procedure documented at

Re: [easybuild] next EasyBuild conf call: *Thu* Aug 31st, 5pm CEST

Notes for today's conf call are available at https://github.com/easybuilders/easybuild/wiki/Conference-call-notes-20170831. Next conf call is planned for Wed Sept 13th, see https://github.com/easybuilders/easybuild/wiki/Conference-calls . regards, Kenneth On 29/08/2017 15:42, Kenneth

Re: [easybuild] easybuild not modifying $MODULEPATH for lmod during builds

Hi Clyde, You're hitting a known issue, see: https://github.com/easybuilders/easybuild-framework/issues/2186. For now, you should set up the /Core/* location in $MODULEPATH outside of EasyBuild (just like you would for users who consume the modules you're installing). regards, Kenneth

Re: [easybuild] 2017b common toolchains

[1] https://github.com/easybuilders/easybuild-easyconfigs/pull/4768 [2] https://github.com/xianyi/OpenBLAS/issues/1252 [3] https://github.com/xianyi/OpenBLAS/pull/1247 [4] https://github.com/xianyi/OpenBLAS/issues/1258 On 03/07/2017 17:28, Kenneth Hoste wrote: On 29/06/2017 08:49, Kenneth Hoste wro

Re: [easybuild] R source packages

Dear John, On 28/08/2017 19:33, Dey, John F wrote: How do you install source packages for R with exts_list ? install_github(c("Azure/rAzureBatch", "Azure/doAzureParallel")) Usually, this boils down to specifying GitHub as the location to download the tarball from. This seems to work:

Re: [easybuild] About python extension build

Dear Yoshihito, On 29/08/2017 15:31, Yoshihito Horigome wrote: Hello, all I attempted to build python using Python-2.7.11-foss-2016a.eb, but several extensions are introduced at the same time in this eb file. Among them, scipy is introduced, but I do not know where the fortran option is

Re: [easybuild] Including pip in EasyBuild module

Hi Andreas, On 28/08/2017 21:00, Andreas Hilboll wrote: Hi Kennth, Kenneth Hoste writes: Hi Andreas, On 25/08/2017 11:23, Andreas Hilboll wrote: PS: I should add that this is a Python3-based easyconfig, so there is no `pip` executable in Python/3.6.1-intel2017a; it is called `pip3`. Maybe

[easybuild] next EasyBuild conf call: *Thu* Aug 31st, 5pm CEST

Dear EasyBuilders, Due to agenda conflicts for several people, we have rescheduled the next EasyBuild conf call to *Thursday* August 31st 2017, 5pm CEST (was Wed Aug 30th), see also https://plus.google.com/events/cdn1pm82neeh70vpfcg24etvlig Current agenda: * update on upcoming EasyBuild

Re: [easybuild] Error building binutils

Dear John, We're not seeing what the actual problem is here, can you please collect a debug log (using "eb --debug binutils-2.27.eb"), and then make the log file available somewhere (attachment is fine as long as the size is reasonable)? regards, Kenneth On 29/08/2017 04:33, John

Re: [easybuild] x11 xbd and qt5

Hi Joachim, It seems like the problem is that xkeyboard-config is not included in the X11 bundle. I looked into adding it, see https://github.com/easybuilders/easybuild-easyconfigs/pull/5066 . It's a bit painful, since it requires intltool as a (build) dependency, which in turn requires

Re: [easybuild] Including pip in EasyBuild module

Hi Andreas, On 25/08/2017 11:23, Andreas Hilboll wrote: PS: I should add that this is a Python3-based easyconfig, so there is no `pip` executable in Python/3.6.1-intel2017a; it is called `pip3`. Maybe the PythonPackage easyblock should somehow check if the correct pip is called pip or pip3?

Re: [easybuild] Intel toolchain / architecture selection

Hi Andreas, On 24/08/2017 20:13, Andreas Hilboll wrote: Hi Easybuilders, when I build the Python-3.6.1-intel-2017a.eb easyconfig on the compute nodes of our cluster instead of the login node, I can only start the generated python executable on the compute nodes: [hilboll@login1 ~]$

Re: [easybuild] Error while loading shared libraries occurs when building GCCcore-4.9.3

Dear Yoshihito, It seems like either this version of GCC or the version of binutils that is being used to build it (binutils 2.25) is too old for your recent operating system (or the binutils it includes...). Is there a reason why you specifically need that fairly old version of GCC?

Re: [easybuild] Install easybuild first time

Dear Udo, On 21/08/2017 09:16, Udo Schmidt wrote: Dear all, I tried to install the latest easybuild version for the first time. Our OS is CentOS 7, EASYBUILD_MODULES_TOOL='EnvironmentModulesC' There are no problems until the first tests: python -m test.framework.suite There is no other

Re: [easybuild] next EasyBuild conf call: Wed Aug 16th (*today*), 5pm CEST

Notes for today's conf call are available at https://github.com/easybuilders/easybuild/wiki/Conference-call-notes-20170816. Next conf call is planned for Wed Aug 30th, cfr. https://plus.google.com/events/cdn1pm82neeh70vpfcg24etvlig . On 16/08/2017 14:35, Kenneth Hoste wrote: Dear

[easybuild] next EasyBuild conf call: Wed Aug 16th (*today*), 5pm CEST

Dear EasyBuilders, The next EasyBuild conf call is planned for today, Wed Aug 16th 2017, at 5pm CEST, see also https://plus.google.com/events/crrvutfl9ifmnjb02v94d26g7qg . Current agenda: * update on upcoming EasyBuild 3.4.0 * update on intel/2017b + foss/2017b toolchains * still waiting

Re: [easybuild] specific toolchain for CMake needed?

Dear Maarten, On 15/08/2017 21:12, Maarten Bosmans wrote: Hi List, I'm trying to get to know EasyBuild. So far there's been lots of little surprises and frustrations, but as I'm slowly getting used to the whole system, it looks like a nice way to manage building (scientific) software from

Re: [easybuild] Errors with bootstrap_eb.py for easybuild 3.3.1

te: Hi I *think* it might have to do with the versions of vsc-install and vsc-base. I tried using the 3.3.0 sources and build failed until I deleted the vsc-install and vsc-base. On Tue, Aug 8, 2017 at 11:48 AM, Kenneth Hoste <kenneth.ho...@ugent.be <mailto:kenneth.ho..

Re: [easybuild] empty path overwritten and not restored

Dear Christian, I would say this is a bug in the modules tool, not in EasyBuild itself, wouldn't you agree? All EasyBuild does is generate a module that includes "prepend-path MANPATH ". If the modules tool does the prepend while not fully honoring the empty value in $MANPATH, there's

Re: [easybuild] Errors with bootstrap_eb.py for easybuild 3.3.1

Dear Clyde, Others have reported this problem too, it seems like some change in EasyBuild v3.3.1 is triggering this problem. We're still trying to figure out what is wrong exactly, follow-up in https://github.com/easybuilders/easybuild-framework/issues/2279 . In the mean time, I'd suggest

Re: [easybuild] Gromacs GPU and view a complete log

Hi Javier, On 12/07/2017 22:22, Javier Antonio Ruiz Bosch wrote: Hi, easybuilders. My HPC has a GPU node that consists of 2 Nvidia K80 GPU cards. I recently need to install GROMACS to run it on that GPU node. I searched a few days ago and I did not found easyconfig of GROMACS for GPU so I

Re: [easybuild] next EasyBuild conf call: Wed July 5th 2017 (*today*), 5pm CEST

On 05/07/2017 09:56, Kenneth Hoste wrote: Dear EasyBuilders, The next EasyBuild conf call is planned for tomorrow, Wed July 5th (today!), 5pm CEST; see also https://plus.google.com/events/c88n8gcgqrrt8mchr9e0c9dph80 . Current agenda: * outlook to EasyBuild v3.3.1 * 2017b toolchains

[easybuild] next EasyBuild conf call: Wed July 5th 2017 (*today*), 5pm CEST

Dear EasyBuilders, The next EasyBuild conf call is planned for tomorrow, Wed July 5th (today!), 5pm CEST; see also https://plus.google.com/events/c88n8gcgqrrt8mchr9e0c9dph80 . Current agenda: * outlook to EasyBuild v3.3.1 * 2017b toolchains * migration to github.com/easybuilders

Re: [easybuild] migration of EasyBuild repositories to github.com/easybuilders on Wed July 5th 2017

://easybuilders.github.io/easybuild/ On 28/06/2017 22:16, Kenneth Hoste wrote: Dear EasyBuilders, On Wednesday July 5th 2017 (i.e., next week) we will be moving the four EasyBuild repositories [1-4] that currently reside under the 'hpcugent' GitHub organization to a new GitHub organization

Re: [easybuild] 2017b common toolchains

On 29/06/2017 08:49, Kenneth Hoste wrote: On 27/06/2017 10:12, Kenneth Hoste wrote: Dear EasyBuilders, The time has come to look into the 2017b update of the common toolchains, i.e. foss/2017b and intel/2017b. I have already created WIP pull requests for them, see [1, 2]. Currently

Re: [easybuild] Create own easy-config for specific library

On 29/06/2017 08:17, Alan O'Cais wrote: Hi Satish, I think the documentation should be enough to get you started: http://easybuild.readthedocs.io/en/latest/Writing_easyconfig_files.html To elaborate on that: the

Re: [easybuild] patch just one R extension

Hi Jure, On 29/06/2017 11:07, Jure Pečar wrote: Hi, I want to apply this patch to R data.table to get it to behave in civilized manner: diff -ur data.table/R/fread.R data.table.fix/R/fread.R --- data.table/R/fread.R2017-01-31 03:10:52.0 + +++ data.table.fix/R/fread.R

Re: [easybuild] 2017b common toolchains

On 27/06/2017 10:12, Kenneth Hoste wrote: Dear EasyBuilders, The time has come to look into the 2017b update of the common toolchains, i.e. foss/2017b and intel/2017b. I have already created WIP pull requests for them, see [1, 2]. Currently, the toolchains are defined as specified below

[easybuild] migration of EasyBuild repositories to github.com/easybuilders on Wed July 5th 2017

Dear EasyBuilders, On Wednesday July 5th 2017 (i.e., next week) we will be moving the four EasyBuild repositories [1-4] that currently reside under the 'hpcugent' GitHub organization to a new GitHub organization created specifically for EasyBuild: https://github.com/easybuilders . The

Re: [easybuild] RE: fosscuda-2017a issue

On 26/06/2017 20:43, Siddiqui, Shahzeb wrote: It looks like the issue was with centos vs RHEL. I was able to build binutils 2.26 using Red Hat Enterprise Linux Server release 7.2, while it didn’t work when running CentOS Linux release 7.3.1611 (Core) Building binutils 2.26 works fine

Re: [easybuild] installation issue

packages or download links found for easybuild error: Could not find suitable distribution for Requirement.parse('easybuild') i presume that the errror is caused by a conection problem i will try to fixed, and then will run again 2017-06-27 16:15 GMT-03:00 Kenneth Hoste <kenneth.ho...@ugent

Re: [easybuild] Local user intstallation

Hi Davide & Miguel, With Lmod, there's another option: you can selective hide modules from users, without breaking existing 'module load' commands, to actively discourage them from using old installations for example. This can be done in various ways, e.g. by putting .modulerc files in

Re: [easybuild] installation issue

_install.html#custom-installation-locations Please make the appropriate changes for your system and try again. 2017-06-27 13:46 GMT-03:00 Kenneth Hoste <kenneth.ho...@ugent.be <mailto:kenneth.ho...@ugent.be>>: Hi Ernesto, (let's keep the mailing list in CC, since this may help

[easybuild] 2017b common toolchains

Dear EasyBuilders, The time has come to look into the 2017b update of the common toolchains, i.e. foss/2017b and intel/2017b. I have already created WIP pull requests for them, see [1, 2]. Currently, the toolchains are defined as specified below, but since updates are expected soon for both

[easybuild] [ANN] EasyBuild v3.3.0

Dear EasyBuilders, I'm pleased to announce the release of EasyBuild version 3.3.0 [1]. This release has a higher version number than the previous release (the best EasyBuild release at the time), which indicates it's even better! Hard to believe, I know, but just keep reading... Highlights

Re: [easybuild] EasyBuild Slack channel

Dear EasyBuilders, An easier way to get Slack invite is now available: just visit https://easybuild-slack.herokuapp.com/ and enter your email address. Thanks to Todd Gamblin for the pointer (https://github.com/rauchg/slackin + Heroku). regards, Kenneth On 16/06/2017 11:53, Kenneth Hoste

Re: [easybuild] install dir on gpfs

Finally, this seems to be yet another example of the tension between metadata consistency and need for speed. What is a matter of wonder though is, why the compiler version is important! It could be that the way the compiler opens the output file for writing makes some kind of difference. (weird.. strace

Re: [easybuild] EasyBuild user meeting at Inside Spring 2017

On 21/06/2017 12:04, Alvarez, Damian wrote: Dear EasyBuilders, Just FYI: our user meeting has an article in the Spring 2017 issue of the InSIDe (Innovatives Supercomputing in Deutschland) magazine. The inside magazine is issued twice a year and contains some of the most important highlights

Re: [easybuild] next EasyBuild conf call: Wed June 21st 2017, 5pm CET

Notes are available at https://github.com/hpcugent/easybuild/wiki/Conference-call-notes-20170621 Next conf call is planned for Wednesday July 5th 2017, cfr. https://plus.google.com/events/c88n8gcgqrrt8mchr9e0c9dph80 On 20/06/2017 21:46, Kenneth Hoste wrote: Dear EasyBuilders, The next

[easybuild] next EasyBuild conf call: Wed June 21st 2017, 5pm CET

Dear EasyBuilders, The next EasyBuild conf call is planned for tomorrow, Wed June 21st, 5pm CET; see also https://plus.google.com/events/c9ruvk8f4vtpuirlo04pmlg0ghc . Current agenda: * outlook to EasyBuild v3.3.0 * moving EasyBuild repositories to https://github.com/easybuilders

Re: [easybuild] Error while installing GCCcore-4.9.3

) /tmp/eb-my585V/easybuild-uZaKHx.log* have been removed. == Temporary directory /tmp/eb-my585V has been removed. Thank you Very much!! Regards, Satish Sherikar On Fri, Jun 16, 2017 at 1:14 PM, Kenneth Hoste <kenneth.ho...@ugent.be <mailto:kenneth.ho...@ugent.be>> wrote: Dea

[easybuild] EasyBuild Slack channel

Dear EasyBuilders, A while ago we got some requests for an EasyBuild Slack channel. We were a bit hesitant at first, since we wanted to avoid further splintering across more available communications channels (mailing list, IRC, conf calls, etc.), but ended up integrating Slack with IRC

Re: [easybuild] Error while installing GCCcore-4.9.3

mentation I linked to explains that in detail, but do let us know if you have any further questions. regards, Kenneth Regards, Satish Sherikar On Thu, Jun 15, 2017 at 9:23 PM, Kenneth Hoste <kenneth.ho...@ugent.be <mailto:kenneth.ho...@ugent.be>> wrote: Dear Satish,

Re: [easybuild] Error while installing GCCcore-4.9.3

Dear Satish, On which OS are you seeing this? From the config.log: ld.gold: error: /gpfs1/home/ibm/.local/easybuild/build/GCCcore/4.9.3/dummy-/gcc-4.9.3/obj/./gcc/libgcc_s.so:1:1: invalid character That looks like the same problem as was reported in

Re: [easybuild] installation issue

38 GMT-03:00 Kenneth Hoste <kenneth.ho...@ugent.be <mailto:kenneth.ho...@ugent.be>>: Hi Ernesto, Hmm, it's not clear to me what's going wrong here. Which OS are you on? Can you try bootstrapping EasyBuild with debugging enabled, as

Re: [easybuild] docbook2pdf: command not found

On 14/06/2017 15:30, Alan O'Cais wrote: Hi Satish, Take a look at http://easybuild.readthedocs.io/en/latest/Writing_easyconfig_files.html#configure-build-install-command-options Basically you add configopts = ['--disable-docs'] to your easyconfig. It doesn't need to be a list, just a

Re: [easybuild] RE: support for tmolex and tcoffee

Hi Shahzeb, On 12/06/2017 17:16, Siddiqui, Shahzeb wrote: I haven’t heard any response. Does anyone have easyconfig for these packages that they mind sharing or submitting a pull request. I'm not aware of easyconfigs for these software packages yet. Maybe this is a good opportunity to

Re: [easybuild] Cleaning up build directories (--cleanup-builddir)

Yup, like Åke and Alan said, --disable-cleanup-builddir. Same applies to other boolean options that are enabled by default (or through another configuration level). It's mentioned at the end of the 'eb --help' output I think? regards, Kenneth > On 9 Jun 2017, at 07:30, Alan O'Cais

Re: [easybuild] libtiff version symbol

fixed in https://github.com/hpcugent/easybuild-easyconfigs/pull/4639 On 29/05/2017 16:06, Jure Pečar wrote: Hi all, Some of our users were complaining that loading libtiff module breaks OS provided software that links with libtiff.so.5, like this: pdflatex:

Re: [easybuild] next EasyBuild conf call rescheduled to Mon May 22nd, 5.30pm CET (was Wed May 24th)

notes are available at https://github.com/hpcugent/easybuild/wiki/Conference-call-notes-20170522 next conf call is scheduled for Wed June 7th 2017 at 5pm CET, see https://plus.google.com/events/cic5f95gos2v5dqscs8nk1v7sho On 19/05/2017 18:14, Kenneth Hoste wrote: Dear EasyBuilders

Re: [easybuild] R and Java - general Java handling in EB

Hi Joachim, On 19/05/2017 14:36, Joachim Hein wrote: Hi, I am wondering how EasyBuild handling of Java is intended to be used. I am trying to built R 3.3.3 and 3.4.0 in intel/2017a using the descriptions in EB 3.2.1. The build fails on Java 1.8.0_121. The tarball for this is not

[easybuild] next EasyBuild conf call rescheduled to Mon May 22nd, 5.30pm CET (was Wed May 24th)

Dear EasyBuilders, Because of an agenda conflict, I have rescheduled the next EasyBuild conf call to next Monday, May 22nd 2017, at 5.30pm CET. I hope this doesn't prevent people from joining in... Preliminary agenda: * outlook to EasyBuild v3.3.0 (ETA mid June) * short overview of

Re: [easybuild] Boost-1.64.0-intel-2017a.eb fails in eb 3.2.1

May 2017 at 13:06, Kenneth Hoste <kenneth.ho...@ugent.be <mailto:kenneth.ho...@ugent.be>> wrote: On 18/05/2017 18:53, Bart Oldeman wrote: Also, https://svn.boost.org/trac/boost/ticket/12516 <https://svn.boost.org/trac/boost/ticket/12516> is another reason for

Re: [easybuild] Boost-1.64.0-intel-2017a.eb fails in eb 3.2.1

On 18/05/2017 18:46, Bart Oldeman wrote: Hi Joachim, this is Boost bug https://svn.boost.org/trac/boost/ticket/12723 We installed Boost 1.60 as the default module to avoid any issue with this. Hmm, I have Boost/1.64.0-intel-2017a installed with the easyconfig included in EasyBuild

Re: [easybuild] Recipe for Torch ?

Hi Maxime, On 17/05/2017 22:27, Maxime Boissonneault wrote: Hi, Has anyone made an EB recipe for Torch ? I'm not aware of any easyconfigs for Torch, but just to clarify: are you referring to http://torch.ch/ ? regards, Kenneth

Re: [easybuild] eb in singularity

th of you. Thoughts? Regards, *From:*Gregory M. Kurtzer [mailto:gmkurt...@gmail.com <mailto:gmkurt...@gmail.com>] *Sent:* Tuesday, April 11, 2017 1:25 PM *To:* Siddiqui, Shahzeb *Cc:* Kenneth Hoste *Subject:* Re: Singularity + EasyBuild Hello Shahzeb, I think this is a very interesting id

Re: [easybuild] eb in singularity

Hello Di, On 08/05/2017 19:43, Di Pe wrote: Interesting discussion about Singularity, there was an older thread here https://mail.google.com/mail/u/0/#search/singularity/159045c3913ad572 and it would be great to learn what EB leadership thinks about integration of containers in EB? To look

Re: [easybuild] EB 3.2, issues with bzip2 for GCCcore 6.3 - fine in EB 3.1.2

Hi Joachim, I was already aware of the issue, and had a solution worked out at https://github.com/hpcugent/easybuild-framework/pull/2209 (which just got merged into develop). I'll issue a bugfix/update release (EasyBuild v3.2.1) later this week. regards, Kenneth On 08/05/2017 12:16,

Re: [easybuild] Software/easyconfigs update avail check

Hi Andreas, On 05/05/2017 08:16, Henkel, Andreas wrote: Hi, @Jens: Thank you very much for your detailed reply. I really appreciate it. Personally, I don't have a problem with all the easybuild packages since they are not opening up for root. I rather appreciate that users could built up

Re: [easybuild] upgrade eb failed

On 02/05/2017 15:39, Yann Sagon wrote: Hello, I tried to install eb 3.1.2 using eb without success. [sagon@master matlab]$ eb --install-latest-eb-release == temporary log file in case of crash /tmp/eb-eZJN99/easybuild-rXb6x1.log == EasyBuild/3.1.2 is already installed (module found), skipping

Re: [easybuild] next EasyBuild conf call: Wed Apr 26th 2017, 5pm CET (today)

Notes are available at https://github.com/hpcugent/easybuild/wiki/Conference-call-notes-20170426 Next conf call is planned for Wed May 10th, 5PM CET, cfr. https://plus.google.com/events/c6ij9rrt06hdq0ntri9i04ndoro On 26/04/2017 13:28, Kenneth Hoste wrote: Dear EasyBuilders, The next

[easybuild] next EasyBuild conf call: Wed Apr 26th 2017, 5pm CET (today)

Dear EasyBuilders, The next EasyBuild conf call is planned for today, Wednesday April 26th 2017, 5pm CET; see also https://plus.google.com/events/c0326noqnl7kl8ggb35684vjb8o . We can discuss the upcoming EasyBuild v3.2.0 release, even though I won't have much time to prepare an overview of

Re: [easybuild] SHA1 checksums

into this. It would make sense to include this in the section on sources/patches, i.e. http://easybuild.readthedocs.io/en/latest/Writing_easyconfig_files.html#source-files-and-patches . regards, Kenneth Cheers, Andreas. Kenneth Hoste writes: Hi Andreas, On 20/04/2017 19:13, Andreas

Re: [easybuild] SHA1 checksums

Hi Andreas, On 20/04/2017 19:13, Andreas Hilboll wrote: Hi all, I'm writing an EasyConfig for some software which provides SHA1 checksums for their source packages. Is there a way to tell eb that the checksums are SHA1 instead of MD5? Yes, several types of checksums are supported, md5 is

Re: [easybuild] PythonModule

Hi John, On 18/04/2017 01:21, John Dey wrote: How do you add a Python module which is a wheel (whl) when building Python with easybuild? How can a Python wheel be installed as part of the exts_list ? This is a small section of my Python easyconfig file. use_pip = True exts_list = [ ...

Re: [easybuild] Re: optarch is ignored when building GCC

On 13/04/2017 16:53, Markus Geimer wrote: Maik, As far as I can see in my build logs, this is nothing that is induced by EasyBuild. It seems as if the configure scripts of various math libraries needed to build GCC (i.e., GMP, isl, etc.) set these flags automatically based on the host

Re: [easybuild] Extra compiler arguments

On 12/04/2017 20:40, Maxime Boissonneault wrote: That's interesting, but I'm thinking a more generic answer (extra_args flag) might be useful. Surely, NAMD is not the only software which might require that kind of special flags. We don't have a toolchain option to specify additional

Re: [easybuild] Readthedocs EasyBuild dynamic data (program-output)

On 04/04/2017 23:59, Siddiqui, Shahzeb wrote: Hello, Our team is looking at Sphinx for documentation and we are hoping to use Readthedocs building the documentation. One feature we have is the ability to present dynamic data using program-output which runs a shell-script and presents the

Re: [easybuild] Does this make sense? (if so, would it make sense to your users?)

On 06/04/2017 08:32, Åke Sandgren wrote: Can we steal that text? We use HMNS so we need to change it accordingly but having the details on what each toolchain consists of is a good idea. See also http://easybuild.readthedocs.io/en/latest/Common-toolchains.html ? K. On 04/06/2017 06:13

Re: [easybuild] Does this make sense? (if so, would it make sense to your users?)

Hi Jack, I gave this a quick read, and it makes sense to me. I do suspect it will be too much for some novice users, for some definition of 'novice', e.g. people who barely know what a compiler is, etc. Maybe some kind of compatibility matrix of full vs subtoolchains would be interesting,

Re: [easybuild] Bootstrap specific EasyBuild version

On 05/04/2017 07:59, Åke Sandgren wrote: Install the bootstrap in a temp dir, mod load it, install the version you want in the proper place, drop the temp. This is indeed the only way for now, the bootstrap script doesn't support specifying a particular version to install. If there's enough

Re: [easybuild] GPG signing RPM in EasyBuild

it down to rpmbuild --sign) regards, Kenneth *From:*easybuild-requ...@lists.ugent.be [mailto:easybuild-requ...@lists.ugent.be] *On Behalf Of *Kenneth Hoste *Sent:* Monday, April 3, 2017 2:35 PM *To:* easybuild@lists.ugent.be *Subject:* Re: [easybuild] GPG signing RPM in EasyBuild On 03/04/2017 18

Re: [easybuild] Common config: to hide or not to hide

--Original Message- From: easybuild-requ...@lists.ugent.be [mailto:easybuild-requ...@lists.ugent.be] On Behalf Of Kenneth Hoste Sent: Monday, April 3, 2017 9:14 AM To: easybuild@lists.ugent.be Subject: Re: [easybuild] Common config: to hide or not to hide On 03/04/2017 08:24, Henkel, Andreas wr

Re: [easybuild] Boost 1.59 with intel-2016b - Missing lib/libboost_python.so

Hi Davide, On 31/03/2017 23:36, Vanzo, Davide wrote: Hello fellow easybuilders, I need to build Boost 1.59.0 with the intel-2016b as a dependency for MySQL 5.7.17 client which requires this specific version of Boost. I modified the Boost-1.59.0-intel-2016a-Python-2.7.11.eb for the new

[easybuild] installing Spack with EasyBuild and vice versa

Dear EasyBuilders, I'm happy to share that EasyBuild and Spack are now able to install each other. Yes, you're reading that right. An easyconfig file to install the latest Spack release (v0.10.0) is available at [1], and will be included in EasyBuild v3.2.0. Support for installing

[easybuild] next EasyBuild conf call: Wed Mar 29th 2017, 5pm CET

Dear EasyBuilders, The next EasyBuild conf call is planned for Wednesday March 29th 2017, 5pm CET; see also https://plus.google.com/events/ctfejker527j88vq7sk7l8cmd0s . Current agenda: * report on benchmarking of Python/numpy built with GCC/Intel compilers + Intel MKL by Damian *

Re: [easybuild] Lmod integration - Families

On 24/03/2017 15:03, Vanzo, Davide wrote: Yup, that is it! Thanks Markus! I think now I owe you guys a keg of beer... Do we get to pick which beer? ;-) K. -- Davide Vanzo, PhD Application Developer Adjunct Assistant Professor of Chemical and Biomolecular Engineering Advanced Computing

Re: [easybuild] Lmod integration - Families

On 16/03/2017 15:24, Markus Geimer wrote: Davide, as a matter of fact I was thinking too about renaming iccifort to something a little more familiar to the users. The problem is that if I do so I need to modify all other easyconfig dependencies whenever they depend on iccifort. Or do you

Re: [easybuild] PANDAseq - static

O Closing log for application name PANDAseq version 2.11 *From: *<easybuild-requ...@lists.ugent.be> on behalf of Kenneth Hoste <kenneth.ho...@ugent.be> *Reply-To: *"easybuild@lists.ugent.be" <easybuild@lists.ugent.be> *Date: *Thursday, March 23, 2017 at 10:28 AM *

Re: [easybuild] PETSc-3.7.3-foss-2016a-Python-2.7.11.eb

Hi Yann, On 21/03/2017 17:23, Yann Sagon wrote: I'm trying to build PETSc using this eb: PETSc-3.7.3-foss-2016a-Python-2.7.11.eb It's failing with this message: *** UNABLE to CONFIGURE with GIVEN OPTIONS

Re: [easybuild] bootstrap_eb.py not installing EasyBuild

Hi Franky, On 21/03/2017 11:21, Backeljauw Franky wrote: Hello, I want to install EasyBuild on a new system (running centos7) using bootstrap_eb.py, but that is not installing anything. In fact, it just creates an empty modules/all directory and then it says it has been successfully

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