Dear all,
I have a problem with r-3.6.2 in 9.1.beta0 in an python2 build (incremental
from a relatiively recent release, but I don't remember which) on Ubuntu
18.04.3, and I have absolutely no clue. The last bit of the error message
is
[r-3.6.2] ../../Makeconf:124: recipe for target 'integrat
On Wed, Jan 15, 2020 at 9:12 AM 'Martin R' via sage-release
wrote:
>
> Dear all,
>
> I have a problem with r-3.6.2 in 9.1.beta0 in an python2 build (incremental
> from a relatiively recent release, but I don't remember which) on Ubuntu
> 18.04.3, and I have absolutely no clue. The last bit of t
Thanks for the help.
I upgraded devtoolset to 7, but it is still pkg-config 0.27.1 there. So
that didn't help.
Markus' suggestion solved it.
Chris
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Many thanks for your help - unfortunately it didn't work though.
I am attaching the new config.log
Martin
Am Mittwoch, 15. Januar 2020 10:19:35 UTC+1 schrieb Dima Pasechnik:
>
> On Wed, Jan 15, 2020 at 9:12 AM 'Martin R' via sage-release
> > wrote:
> >
> > Dear all,
> >
> > I have a problem
It seems you have remains of an old R installation in local/
So you need
rm -rf local/lib/R
rm local/bin/R*
and then re-run ./configure
(details ar in https://trac.sagemath.org/ticket/28884)
On Wed, Jan 15, 2020 at 10:01 AM 'Martin R' via sage-release
wrote:
>
> Many thanks for your help - unf
Thanks again! It still tries to build R and fails
I checked that system R starts, it does (R version 3.4.4)
The new config.log is attached.
Sorry and thank you!
Am Mittwoch, 15. Januar 2020 11:13:09 UTC+1 schrieb Dima Pasechnik:
>
> It seems you have remains of an old R installation in local/
On Wed, Jan 15, 2020 at 10:37 AM 'Martin R' via sage-release
wrote:
>
> Thanks again! It still tries to build R and fails
>
> I checked that system R starts, it does (R version 3.4.4)
Please also make sure that
pkg-config --modversion libR
outputs the version.
However there is just no "checkin
Am Mittwoch, 15. Januar 2020 12:02:30 UTC+1 schrieb Dima Pasechnik:
>
> On Wed, Jan 15, 2020 at 10:37 AM 'Martin R' via sage-release
> > wrote:
> >
> > Thanks again! It still tries to build R and fails
> >
> > I checked that system R starts, it does (R version 3.4.4)
> Please also make sure
On Wed, Jan 15, 2020 at 11:35 AM 'Martin R' via sage-release
wrote:
>
> Am Mittwoch, 15. Januar 2020 12:02:30 UTC+1 schrieb Dima Pasechnik:
>>
>> On Wed, Jan 15, 2020 at 10:37 AM 'Martin R' via sage-release
>> wrote:
>> >
>> > Thanks again! It still tries to build R and fails
>> >
>> > I checked
Oh dea, this is becoming strange:
The output of configure says that
atlas, openblas, iconv will NOT be installed, but
bzip2-1.0.6-20150304.p0
readline-6.3.008.p0
xz-5.2.2.p0
pcre-8.40.p2
curl-7.62.0.p0
However, I certainly have bzip2, xz, pcre and curl on my system, and I
guess also readline.
On Wed, Jan 15, 2020 at 12:13 PM 'Martin R' via sage-release
wrote:
>
> Oh dea, this is becoming strange:
>
> The output of configure says that
>
> atlas, openblas, iconv will NOT be installed, but
>
> bzip2-1.0.6-20150304.p0
> readline-6.3.008.p0
> xz-5.2.2.p0
> pcre-8.40.p2
> curl-7.62.0.p0
>
>
Am Mittwoch, 15. Januar 2020 13:23:17 UTC+1 schrieb Dima Pasechnik:
>
> On Wed, Jan 15, 2020 at 12:13 PM 'Martin R' via sage-release
> > wrote:
> >
> > Oh dea, this is becoming strange:
> >
> > The output of configure says that
> >
> > atlas, openblas, iconv will NOT be installed, but
> >
Note that you need to uninstall bzip2, xz, pcre, readline, curl before
the corresponding system
versions are picked up by ./configure (of course all this is not
needed for fresh builds...)
if this does not help please post config.log
On Wed, Jan 15, 2020 at 12:53 PM 'Martin R' via sage-release
w
BINGO!!!
Many many many thanks!
Martin
Am Mittwoch, 15. Januar 2020 14:00:29 UTC+1 schrieb Dima Pasechnik:
>
> Note that you need to uninstall bzip2, xz, pcre, readline, curl before
> the corresponding system
> versions are picked up by ./configure (of course all this is not
> needed for fres
I'm afraid I was celebrating too early. make build succeeded, but sage
doesn't start anymore now. I guess I should start from scratch. :-(
Am Mittwoch, 15. Januar 2020 14:07:49 UTC+1 schrieb Martin R:
>
> BINGO!!!
>
> Many many many thanks!
>
> Martin
>
> Am Mittwoch, 15. Januar 2020 14:00:29 U
For the record:
ImportError: /usr/lib/x86_64-linux-gnu/libgsl.so.23: undefined symbol:
cblas_ctrmv
Am Mittwoch, 15. Januar 2020 14:16:39 UTC+1 schrieb Martin R:
>
> I'm afraid I was celebrating too early. make build succeeded, but sage
> doesn't start anymore now. I guess I should start from
probably you need to rebuild at least sagelib.
./sage -f sagelib
On Wed, Jan 15, 2020 at 1:18 PM 'Martin R' via sage-release
wrote:
>
> For the record:
>
> ImportError: /usr/lib/x86_64-linux-gnu/libgsl.so.23: undefined symbol:
> cblas_ctrmv
>
>
> Am Mittwoch, 15. Januar 2020 14:16:39 UTC+1 schr
On a slightly smaller machine (Debian testing, core i5, 8 GB RAM) with
different installed software, an upgrade of 9.0 to 9.1.beta0 (Python
3-based) leads to ptestalllong getting 12 failures, all transient:
Using
–optional=build,dochtml,dot2tex,external,fricas,giacpy_sage,libsemigroups,memlim
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