bioc-sig-sequencing  

Messages by Date

• 2009/08/04 Re: [Bioc-sig-seq] readAligned in ShortRead package Martin Morgan
• 2009/08/04 Re: [Bioc-sig-seq] How to graphical represent different views on a reference genomic sequence Michael Lawrence
• 2009/08/04 [Bioc-sig-seq] readAligned in ShortRead package Ingunn Berget
• 2009/08/04 Re: [Bioc-sig-seq] How to graphical represent different views on a reference genomic sequence Patrick Aboyoun
• 2009/08/04 [Bioc-sig-seq] How to graphical represent different views on a reference genomic sequence Purnachander
• 2009/08/03 Re: [Bioc-sig-seq] fastq2fasta Martin Morgan
• 2009/08/03 Re: [Bioc-sig-seq] fastq2fasta joseph
• 2009/08/03 Re: [Bioc-sig-seq] fastq2fasta Martin Morgan
• 2009/08/03 [Bioc-sig-seq] fastq2fasta joseph
• 2009/08/03 Re: [Bioc-sig-seq] Calculating/plotting Avg Base Quality Johannes Waage
• 2009/08/03 Re: [Bioc-sig-seq] Calculating/plotting Avg Base Quality Martin Morgan
• 2009/08/03 Re: [Bioc-sig-seq] Calculating/plotting Avg Base Quality Pratap, Abhishek
• 2009/08/03 Re: [Bioc-sig-seq] Calculating/plotting Avg Base Quality Martin Morgan
• 2009/08/03 Re: [Bioc-sig-seq] Calculating/plotting Avg Base Quality Pratap, Abhishek
• 2009/08/03 Re: [Bioc-sig-seq] Calculating/plotting Avg Base Quality Johannes Waage
• 2009/08/03 [Bioc-sig-seq] Calculating/plotting Avg Base Quality Pratap, Abhishek
• 2009/07/26 Re: [Bioc-sig-seq] Short read overlap function Johannes Waage
• 2009/07/25 Re: [Bioc-sig-seq] readAligned and SAM format Martin Morgan
• 2009/07/25 Re: [Bioc-sig-seq] readAligned and SAM format Kasper Daniel Hansen
• 2009/07/24 Re: [Bioc-sig-seq] readAligned and SAM format Martin Morgan
• 2009/07/24 [Bioc-sig-seq] readAligned and SAM format Hattem, Gaye
• 2009/07/24 Re: [Bioc-sig-seq] Short read overlap function Michael Lawrence
• 2009/07/24 Re: [Bioc-sig-seq] Short read overlap function Joern Toedling
• 2009/07/24 Re: [Bioc-sig-seq] Short read overlap function Michael Lawrence
• 2009/07/24 Re: [Bioc-sig-seq] Short read overlap function Michael Lawrence
• 2009/07/24 Re: [Bioc-sig-seq] Biostrings: problem to access indel-details form pairwiseAlignment() Wolfgang Raffelsberger
• 2009/07/24 Re: [Bioc-sig-seq] Biostrings: problem to access indel-details form pairwiseAlignment() Patrick Aboyoun
• 2009/07/24 [Bioc-sig-seq] Short read overlap function Johannes Waage
• 2009/07/23 Re: [Bioc-sig-seq] rtracklayer and wig manipulation Ivan Gregoretti
• 2009/07/23 Re: [Bioc-sig-seq] rtracklayer and wig manipulation Patrick Aboyoun
• 2009/07/23 Re: [Bioc-sig-seq] rtracklayer and wig manipulation Michael Lawrence
• 2009/07/23 Re: [Bioc-sig-seq] rtracklayer and wig manipulation Simon Anders
• 2009/07/23 Re: [Bioc-sig-seq] rtracklayer and wig manipulation Michael Lawrence
• 2009/07/23 Re: [Bioc-sig-seq] rtracklayer and wig manipulation Michael Lawrence
• 2009/07/23 Re: [Bioc-sig-seq] rtracklayer and wig manipulation Simon Anders
• 2009/07/23 Re: [Bioc-sig-seq] rtracklayer and wig manipulation Michael Lawrence
• 2009/07/23 [Bioc-sig-seq] rtracklayer and wig manipulation Ivan Gregoretti
• 2009/07/22 Re: [Bioc-sig-seq] Biostrings: problem to access indel-details form pairwiseAlignment() Patrick Aboyoun
• 2009/07/22 Re: [Bioc-sig-seq] Biostrings: problem to access indel-details form pairwiseAlignment() Wolfgang Raffelsberger
• 2009/07/21 Re: [Bioc-sig-seq] Biostrings: problem to access indel-details form pairwiseAlignment() Patrick Aboyoun
• 2009/07/21 [Bioc-sig-seq] Biostrings: problem to access indel-details form pairwiseAlignment() Wolfgang Raffelsberger
• 2009/07/20 Re: [Bioc-sig-seq] R package for building suffix trees Michael Lawrence
• 2009/07/19 [Bioc-sig-seq] R package for building suffix trees Purnachander
• 2009/07/18 Re: [Bioc-sig-seq] Pruning rows from a RangedData object Patrick Aboyoun
• 2009/07/17 Re: [Bioc-sig-seq] Pruning rows from a RangedData object Patrick Aboyoun
• 2009/07/17 Re: [Bioc-sig-seq] reading 454 data with ShortRead Pratap, Abhishek
• 2009/07/17 Re: [Bioc-sig-seq] reading 454 data with ShortRead Wolfgang Raffelsberger
• 2009/07/17 Re: [Bioc-sig-seq] reading 454 data with ShortRead Michael Mueller
• 2009/07/17 [Bioc-sig-seq] reading 454 data with ShortRead Wolfgang Raffelsberger
• 2009/07/17 [Bioc-sig-seq] Pruning rows from a RangedData object Simon Anders
• 2009/07/16 [Bioc-sig-seq] Rolexa, a new BioC package for calling bases off a Solexa sequencer Patrick Aboyoun
• 2009/07/16 Re: [Bioc-sig-seq] aggregating a RangedData over an IRanges object Patrick Aboyoun
• 2009/07/15 Re: [Bioc-sig-seq] aggregating a RangedData over an IRanges object Patrick Aboyoun
• 2009/07/15 Re: [Bioc-sig-seq] aggregating a RangedData over an IRanges object Patrick Aboyoun
• 2009/07/15 Re: [Bioc-sig-seq] aggregating a RangedData over an IRanges object Simon Anders
• 2009/07/15 Re: [Bioc-sig-seq] aggregating a RangedData over an IRanges object Simon Anders
• 2009/07/15 Re: [Bioc-sig-seq] packages for sequence assembly? Dan Bolser
• 2009/07/15 Re: [Bioc-sig-seq] packages for sequence assembly? Dan Bolser
• 2009/07/15 Re: [Bioc-sig-seq] packages for sequence assembly? Sean Davis
• 2009/07/14 [Bioc-sig-seq] packages for sequence assembly? Purnachander
• 2009/07/14 Re: [Bioc-sig-seq] aggregating a RangedData over an IRanges object Patrick Aboyoun
• 2009/07/13 Re: [Bioc-sig-seq] aggregating a RangedData over an IRanges object Patrick Aboyoun
• 2009/07/13 Re: [Bioc-sig-seq] aggregating a RangedData over an IRanges object Patrick Aboyoun
• 2009/07/13 Re: [Bioc-sig-seq] aggregating a RangedData over an IRanges object Simon Anders
• 2009/07/13 Re: [Bioc-sig-seq] aggregating a RangedData over an IRanges object Michael Lawrence
• 2009/07/13 Re: [Bioc-sig-seq] IRanges - start and width replacement methods for RangedData and RangesList Patrick Aboyoun
• 2009/07/13 Re: [Bioc-sig-seq] [BioC] Error in assign while calling the vmatchPattern function Hervé Pagès
• 2009/07/13 [Bioc-sig-seq] aggregating a RangedData over an IRanges object Simon Anders
• 2009/07/13 [Bioc-sig-seq] IRanges - start and width replacement methods for RangedData and RangesList Nicolas Delhomme
• 2009/07/10 Re: [Bioc-sig-seq] About ShortRead Package Pratap, Abhishek
• 2009/07/10 Re: [Bioc-sig-seq] About ShortRead Package Martin Morgan
• 2009/07/10 Re: [Bioc-sig-seq] About ShortRead Package Pratap, Abhishek
• 2009/07/10 Re: [Bioc-sig-seq] About ShortRead Package Pratap, Abhishek
• 2009/07/10 Re: [Bioc-sig-seq] About ShortRead Package Martin Morgan
• 2009/07/10 [Bioc-sig-seq] About ShortRead Package Pratap, Abhishek
• 2009/07/08 Re: [Bioc-sig-seq] question about bowtie Bogdan Tanasa
• 2009/07/07 Re: [Bioc-sig-seq] read paired end alignment results Wu, Xiwei
• 2009/07/07 Re: [Bioc-sig-seq] read paired end alignment results Martin Morgan
• 2009/07/07 [Bioc-sig-seq] read paired end alignment results Wu, Xiwei
• 2009/07/07 Re: [Bioc-sig-seq] question about bowtie Joern Toedling
• 2009/07/06 [Bioc-sig-seq] question about bowtie Bogdan Tanasa
• 2009/07/06 Re: [Bioc-sig-seq] RNAseq stat analysis Simon Anders
• 2009/07/06 [Bioc-sig-seq] RNAseq stat analysis Eric Bonnet
• 2009/07/06 Re: [Bioc-sig-seq] `+` for GenomeData and coverage from several lanes Patrick Aboyoun
• 2009/07/05 Re: [Bioc-sig-seq] `+` for GenomeData and coverage from several lanes Simon Anders
• 2009/07/05 Re: [Bioc-sig-seq] `+` for GenomeData and coverage from several lanes Simon Anders
• 2009/07/05 Re: [Bioc-sig-seq] `+` for GenomeData and coverage from several lanes Simon Anders
• 2009/07/05 Re: [Bioc-sig-seq] `+` for GenomeData and coverage from several lanes Simon Anders
• 2009/07/04 Re: [Bioc-sig-seq] `+` for GenomeData and coverage from several lanes Patrick Aboyoun
• 2009/06/30 Re: [Bioc-sig-seq] `+` for GenomeData and coverage from several lanes Patrick Aboyoun
• 2009/06/30 Re: [Bioc-sig-seq] `+` for GenomeData and coverage from several lanes Patrick Aboyoun
• 2009/06/30 Re: [Bioc-sig-seq] `+` for GenomeData and coverage from several lanes Simon Anders
• 2009/06/30 Re: [Bioc-sig-seq] `+` for GenomeData and coverage from several lanes Martin Morgan
• 2009/06/30 Re: [Bioc-sig-seq] `+` for GenomeData and coverage from several lanes Michael Lawrence
• 2009/06/30 Re: [Bioc-sig-seq] `+` for GenomeData and coverage from several lanes Patrick Aboyoun
• 2009/06/30 [Bioc-sig-seq] `+` for GenomeData and coverage from several lanes Simon Anders
• 2009/06/30 [Bioc-sig-seq] Protocol for analyzing digital expression profile data xuxiang086
• 2009/06/29 Re: [Bioc-sig-seq] Rle vs RangedData Patrick Aboyoun
• 2009/06/29 Re: [Bioc-sig-seq] Rle vs RangedData Wolfgang Huber
• 2009/06/26 Re: [Bioc-sig-seq] Rle vs RangedData Simon Anders
• 2009/06/26 Re: [Bioc-sig-seq] Rle vs RangedData Michael Lawrence
• 2009/06/26 [Bioc-sig-seq] Rle vs RangedData Simon Anders
• 2009/06/24 Re: [Bioc-sig-seq] Size of Illumina fastaq files to be read in shortReads Kasper Daniel Hansen
• 2009/06/24 Re: [Bioc-sig-seq] Size of Illumina fastaq files to be read in shortReads Martin Morgan
• 2009/06/24 [Bioc-sig-seq] Size of Illumina fastaq files to be read in shortReads Anastasia Gioti
• 2009/06/23 Re: [Bioc-sig-seq] removing variable length 3' adaptor sequence Martin Morgan
• 2009/06/23 [Bioc-sig-seq] removing variable length 3' adaptor sequence Lana Schaffer
• 2009/06/17 Re: [Bioc-sig-seq] complement and reverseComplement from a character vector Hervé Pagès
• 2009/06/17 Re: [Bioc-sig-seq] [BioC] Error in assign while calling the vmatchPattern function Henrik Bengtsson
• 2009/06/16 Re: [Bioc-sig-seq] [BioC] Error in assign while calling the vmatchPattern function Hervé Pagès
• 2009/06/16 Re: [Bioc-sig-seq] complement and reverseComplement from a character vector Nicolas Delhomme
• 2009/06/11 Re: [Bioc-sig-seq] ShortRead, readAligned() and qa() Ivan Gregoretti
• 2009/06/09 Re: [Bioc-sig-seq] ShortRead, readAligned() and qa() Martin Morgan
• 2009/06/08 [Bioc-sig-seq] ShortRead, readAligned() and qa() Ivan Gregoretti
• 2009/06/04 Re: [Bioc-sig-seq] Pairwise comparisons of peak sets (for ChIP-seqs or anything else) Ivan Gregoretti
• 2009/06/04 Re: [Bioc-sig-seq] Pairwise comparisons of peak sets (for ChIP-seqs or anything else) Thomas Girke
• 2009/06/04 [Bioc-sig-seq] Pairwise comparisons of peak sets (for ChIP-seqs or anything else) Ivan Gregoretti
• 2009/06/03 Re: [Bioc-sig-seq] extendReads() error in chipseq package Rebecca Sun
• 2009/06/03 Re: [Bioc-sig-seq] extendReads() error in chipseq package Martin Morgan
• 2009/06/03 [Bioc-sig-seq] extendReads() error in chipseq package Rebecca Sun
• 2009/06/02 Re: [Bioc-sig-seq] complement and reverseComplement from a character vector Hervé Pagès
• 2009/06/02 [Bioc-sig-seq] viral RNA library Daniel Brewer
• 2009/06/02 [Bioc-sig-seq] complement and reverseComplement from a character vector Nicolas Delhomme
• 2009/06/01 Re: [Bioc-sig-seq] Extracting DNA sequences from BSgenome.Mmusculus.UCSC.mm9_1.3.11 Paul Leo
• 2009/06/01 Re: [Bioc-sig-seq] Extracting DNA sequences from BSgenome.Mmusculus.UCSC.mm9_1.3.11 Kasper Daniel Hansen
• 2009/06/01 Re: [Bioc-sig-seq] Extracting DNA sequences from BSgenome.Mmusculus.UCSC.mm9_1.3.11 Hervé Pagès
• 2009/06/01 Re: [Bioc-sig-seq] Extracting DNA sequences from BSgenome.Mmusculus.UCSC.mm9_1.3.11 Paul Leo
• 2009/05/29 Re: [Bioc-sig-seq] Extracting DNA sequences from BSgenome.Mmusculus.UCSC.mm9_1.3.11 Hervé Pagès
• 2009/05/29 Re: [Bioc-sig-seq] Extracting DNA sequences from BSgenome.Mmusculus.UCSC.mm9_1.3.11 Ivan Gregoretti
• 2009/05/28 Re: [Bioc-sig-seq] Extracting DNA sequences from BSgenome.Mmusculus.UCSC.mm9_1.3.11 Hervé Pagès
• 2009/05/28 Re: [Bioc-sig-seq] DGE analysis? Mads Sønderkær
• 2009/05/28 Re: [Bioc-sig-seq] Extracting DNA sequences from BSgenome.Mmusculus.UCSC.mm9_1.3.11 Ivan Gregoretti
• 2009/05/28 Re: [Bioc-sig-seq] DGE analysis? Johannes Waage
• 2009/05/28 Re: [Bioc-sig-seq] Extracting DNA sequences from BSgenome.Mmusculus.UCSC.mm9_1.3.11 Hervé Pagès
• 2009/05/28 [Bioc-sig-seq] DGE analysis? Jenny Drnevich
• 2009/05/28 Re: [Bioc-sig-seq] Extracting DNA sequences from BSgenome.Mmusculus.UCSC.mm9_1.3.11 Hervé Pagès
• 2009/05/28 Re: [Bioc-sig-seq] Extracting DNA sequences from BSgenome.Mmusculus.UCSC.mm9_1.3.11 Michael Lawrence
• 2009/05/28 Re: [Bioc-sig-seq] Extracting DNA sequences from BSgenome.Mmusculus.UCSC.mm9_1.3.11 Kasper Daniel Hansen
• 2009/05/28 Re: [Bioc-sig-seq] Extracting DNA sequences from BSgenome.Mmusculus.UCSC.mm9_1.3.11 Kasper Daniel Hansen
• 2009/05/28 [Bioc-sig-seq] Extracting DNA sequences from BSgenome.Mmusculus.UCSC.mm9_1.3.11 Ivan Gregoretti
• 2009/05/28 Re: [Bioc-sig-seq] A bug in the AlignedRead coverage method? Martin Morgan
• 2009/05/28 Re: [Bioc-sig-seq] A bug in the AlignedRead coverage method? Nicolas Delhomme
• 2009/05/27 Re: [Bioc-sig-seq] A bug in the AlignedRead coverage method? Martin Morgan
• 2009/05/27 Re: [Bioc-sig-seq] A bug in the AlignedRead coverage method? Nicolas Delhomme
• 2009/05/27 Re: [Bioc-sig-seq] A bug in the AlignedRead coverage method? Martin Morgan
• 2009/05/27 [Bioc-sig-seq] A bug in the AlignedRead coverage method? Nicolas Delhomme
• 2009/05/25 Re: [Bioc-sig-seq] Minor bug in method 'aligned' of class 'PairwiseAlignedFixedSubject' Patrick Aboyoun
• 2009/05/25 [Bioc-sig-seq] Minor bug in method 'aligned' of class 'PairwiseAlignedFixedSubject' Joern Toedling
• 2009/05/25 [Bioc-sig-seq] extendRanges - error with AlignedRead vs GenomeData? Paul Leo
• 2009/05/21 Re: [Bioc-sig-seq] Comparing two chipseq position sets Michael Lawrence
• 2009/05/21 Re: [Bioc-sig-seq] Comparing two chipseq position sets Michael Lawrence
• 2009/05/21 Re: [Bioc-sig-seq] Comparing two chipseq position sets Ivan Gregoretti
• 2009/05/20 Re: [Bioc-sig-seq] Comparing two chipseq position sets Hervé Pagès
• 2009/05/20 Re: [Bioc-sig-seq] Comparing two chipseq position sets Ivan Gregoretti
• 2009/05/20 Re: [Bioc-sig-seq] Fast inject into XStringSet objects Thomas Girke
• 2009/05/19 Re: [Bioc-sig-seq] Fast inject into XStringSet objects Patrick Aboyoun
• 2009/05/19 Re: [Bioc-sig-seq] Fast inject into XStringSet objects Hervé Pagès
• 2009/05/19 Re: [Bioc-sig-seq] Comparing two chipseq position sets Hervé Pagès
• 2009/05/19 Re: [Bioc-sig-seq] Fast inject into XStringSet objects Thomas Girke
• 2009/05/19 Re: [Bioc-sig-seq] Fast inject into XStringSet objects Hervé Pagès
• 2009/05/15 Re: [Bioc-sig-seq] The "ranges" slot in the sread slot of an AlignedRead class Nicolas Delhomme
• 2009/05/15 Re: [Bioc-sig-seq] The "ranges" slot in the sread slot of an AlignedRead class Nicolas Delhomme
• 2009/05/14 Re: [Bioc-sig-seq] removing non-unique sequences and uniqueFilter Martin Morgan
• 2009/05/14 [Bioc-sig-seq] removing non-unique sequences and uniqueFilter Tobias Straub
• 2009/05/14 Re: [Bioc-sig-seq] the as.matrix method of the RangesMatchingList Michael Lawrence
• 2009/05/14 Re: [Bioc-sig-seq] the as.matrix method of the RangesMatchingList Michael Lawrence
• 2009/05/14 Re: [Bioc-sig-seq] the as.matrix method of the RangesMatchingList Nicolas Delhomme
• 2009/05/13 Re: [Bioc-sig-seq] the as.matrix method of the RangesMatchingList Michael Lawrence
• 2009/05/13 Re: [Bioc-sig-seq] The "ranges" slot in the sread slot of an AlignedRead class Martin Morgan
• 2009/05/13 Re: [Bioc-sig-seq] the as.matrix method of the RangesMatchingList Wolfgang Huber
• 2009/05/13 [Bioc-sig-seq] the as.matrix method of the RangesMatchingList Nicolas Delhomme
• 2009/05/13 Re: [Bioc-sig-seq] The "ranges" slot in the sread slot of an AlignedRead class Nicolas Delhomme
• 2009/05/12 Re: [Bioc-sig-seq] The "ranges" slot in the sread slot of an AlignedRead class Martin Morgan
• 2009/05/12 [Bioc-sig-seq] The "ranges" slot in the sread slot of an AlignedRead class Nicolas Delhomme
• 2009/05/12 Re: [Bioc-sig-seq] Comparing two chipseq position sets Ivan Gregoretti
• 2009/05/12 Re: [Bioc-sig-seq] Comparing two chipseq position sets Wolfgang Huber
• 2009/05/11 Re: [Bioc-sig-seq] calculate alignable portion of the genome simon andrews (BI)
• 2009/05/11 Re: [Bioc-sig-seq] calculate alignable portion of the genome João Fadista
• 2009/05/11 Re: [Bioc-sig-seq] calculate alignable portion of the genome simon andrews (BI)
• 2009/05/11 [Bioc-sig-seq] calculate alignable portion of the genome João Fadista
• 2009/05/10 Re: [Bioc-sig-seq] refseq to genome location Michael Lawrence
• 2009/05/10 [Bioc-sig-seq] refseq to genome location Wu, Xiwei
• 2009/05/09 Re: [Bioc-sig-seq] pileup() for small RNA sequencing Wu, Xiwei
• 2009/05/09 Re: [Bioc-sig-seq] pileup() for small RNA sequencing Simon Anders
• 2009/05/09 Re: [Bioc-sig-seq] pileup() for small RNA sequencing Michael Lawrence
• 2009/05/09 Re: [Bioc-sig-seq] pileup() for small RNA sequencing Martin Morgan
• 2009/05/09 [Bioc-sig-seq] pileup() for small RNA sequencing Wu, Xiwei
• 2009/05/08 Re: [Bioc-sig-seq] Comparing two chipseq position sets Ivan Gregoretti
• 2009/05/07 Re: [Bioc-sig-seq] QA for Bowtie Martin Morgan
• 2009/05/07 [Bioc-sig-seq] RNA-seq and PET-seq Bogdan Tanasa
• 2009/05/07 [Bioc-sig-seq] QA for Bowtie Eyad Almasri
• 2009/05/07 Re: [Bioc-sig-seq] Comparing two chipseq position sets Sean Davis
• 2009/05/07 Re: [Bioc-sig-seq] Comparing two chipseq position sets Nicolas Delhomme
• 2009/05/07 Re: [Bioc-sig-seq] Comparing two chipseq position sets Steve Lianoglou
• 2009/05/07 Re: [Bioc-sig-seq] Comparing two chipseq position sets Steve Goldstein
• 2009/05/07 Re: [Bioc-sig-seq] Comparing two chipseq position sets Ivan Gregoretti
• 2009/05/07 Re: [Bioc-sig-seq] Comparing two chipseq position sets Michael Lawrence
• 2009/05/06 Re: [Bioc-sig-seq] Comparing two chipseq position sets Nicolas Delhomme
• 2009/05/06 Re: [Bioc-sig-seq] How to install chipseq library in R Martin Morgan
• 2009/05/06 [Bioc-sig-seq] How to install chipseq library in R Jake Lin

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