ents transition of a
> domain from one orientation to the other. I tried using "show_bumps.py" to
> bring up clashes during the transition but the cgo that is written out shows
> clashes only for the first state. Am I doing something wrong or should we
> pass additional commands t
Cheers,
> Jared
>
>> On Jan 25, 2016, at 2:34 PM, Jordan Willis wrote:
>>
>> Hi,
>>
>> Is there a way to iterate through the names that have been grouped?
>>
>> iterate
>>
>> doesn’t seem to do it because it kills my pymol app.
>>
>
phosphates which makes my drawings 'overloaded'. I hope I was
> clear enough.
>
> Many thanks in advance for your answers,
>
> Maria
>
> CNRS
> France
--
Thomas Holder
PyMOL Principal Developer
Schrödinger, Inc.
-
tiple aligned proteins with their electrostatic surfaces
> simultaneously? I tried 'set grid_mode' and it works but not if I do an
> alignment after loading the pqr structure and the APBS map. I suppose I
> could/should align them before doing the calculations but since I didn'
cting line. I haven’t
> discovered a way to make these bi-colored lines in ALIGN. Any ideas?
>
> I have tried the open source version 1.8.0, plus several earlier versions
> from various origins (all on Macs)
know that the PyMOLWiki was being
> DDoS'd. I can imagine more productive use of one's time. If you encounter
> issues, please let me know.
>
> Happy New Year! I hope everyone enjoyed their holiday(s).
>
&
t what we want,
> it is better to take what answer we get.
>
> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
--
Thomas Holder
PyMOL Principal Developer
Schrödinger, Inc.
--
__
nger
--
Thomas Holder
PyMOL Principal Developer
Schrödinger, Inc.
--
___
PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net)
Info Page: https://lists.sourceforge.net/lists/list
gt;> Justin
>
> Hi,
>
> I updated all scripts except of two for python2 and 3 compatibility.
>
> isoslider.py and frame_slider.py are using tk. Although 2to3 is able to
> convert the code I am not familiar with implementing it in a cross ABI
> comp
th Python 2, we
will check it in to SVN.
Cheers,
Thomas
--
Thomas Holder
PyMOL Principal Developer
Schrödinger, Inc.
--
Go from Idea to Many App Stores Faster with Intel(R) XDK
Give your users amazing mobile app expe
,'w')
> rms2=cmd.align('structure_0002 and name ca','structure_0001 and name ca')
> .
> . (NOTE: I got all of these structures by the command split_states somename)
> .
> rms9=cmd.align('structure_0009 and name ca','structure_0001 and nam
te:
> Hi,
> By accident(!) I upgraded my Mac OS to El Captain. The problem is now I
> cannot open my MacPymol that was fine up to previous or lion.
> I downloaded XQuartz but still somehow doensn’t open my old MacPymol. Has
> some one experienced or solved this problem?
>
&g
source, e.g., #2:
> >set light2, [x, y, z]
>
> The problem is - I see no changes to the scene.
>
> The question: How to use the "set light(2-8)" command or is there any
> other way to reposition light sources?
>
> Thank you,
> Darya
--
Thomas Holder
P
ion.pdb has the all atom orientations (x,y,z) exactly same as
> those of the original PDB I initially input to the pymol for the process I
> obtained the withneworientation.pdb.
>
> Smith
--
Thomas Holder
PyMOL Principal Developer
Schrödinger, Inc.
gt;>>> -Spencer
>>>>>
>>>>> On Thu, Nov 26, 2015 at 8:33 AM, Smith Liu wrote:
>>>>> Dear All,
>>>>>
>>>>> For get view, we get something like
>>>>>
>>>>> set_view (\
>>>>>
the mmCIF format, which is the new
standard since 2014.
See also
http://mmcif.wwpdb.org/docs/faqs/pdbx-mmcif-faq-general.html
Cheers,
Thomas
--
Thomas Holder
PyMOL Principal Developer
Schrödinger,
7, Albert wrote:
> Hello:
>
> I noticed that if we run command:
>
> fetch 2ac1
>
> to get PDB into pymol in Version 1.8.0, it downloaded .cif file by
> default. I am just wondering is it possible to change the default format
> as .pdb file?
>
> tha
ello:
>
> I've shown an object as cartoon and displaced sticks with various
> colors. I am just wondering, can we clone all representation from object
> 1 to object 2 with some command in Pymol?
amp; Dorothy Kline Professor
> Department of Chemistry
> Colgate University
> 13 Oak Drive
> Hamilton, NY 13346
>
> tel: (315)-228-7245
> ofc: (315)-228-7395
> fax: (315)-228-7935
> email: rrowl...@colgate.edu
>
> ----------
#x27; (pmg_tk.startup.xPyder).
> No module named backend_wxagg
> Unable to initialize plugin 'mtsslPlotter' (pmg_tk.startup.mtsslPlotter).
>
> I google it, and cannot find any helpful information
>
>
> thanks again
>
> ALbert
>
>
> On 11/18/2015 11:16
t; Unable to initialize plugin 'mtsslTrilaterate'
> (pmg_tk.startup.mtsslTrilaterate).
>
> I am just wondering how can we solve the problem? I've already installed
> python PMW in my machine.
>
> thank you ver
” command now by default downloads mmCIF files (type=cif).
This release fixes the issues with ATI R9 graphics cards on OS X.
Find the complete release notes on:
http://pymol.org/features
We welcome any feedback and bug reports.
Cheers,
- The PyMOL Team at Schrödinger
--
Thomas Holder
PyMOL Principal
ssor of Biological Chemistry, University of Michigan
> Currently on sabbatical:
> Laboratory of Susan Buchanan, Ph.D.
> NIDDK, National Institutes of Health, Bethesda, MD 20892-8030
> sa...@umich.edu mobile (734) 276-6505
--
Thomas Holder
PyMOL Principal Developer
Schrödinger, In
>
>
>
> Hi Thomas e.a.,
>
> Given two selections, would there be an easy way to
>
> 1. find the atoms which are both in selection 1 and 2, and the indices of
> those in the selections
>
> and
>
> 2. find the matching atoms in the two selections
ntive, Mac) halts
> with a segmentation fault. I know it's my bad for feeding a still nested
> list, but a segmentation fault is a harsh way of complaining :)
>
> Cheers,
>
> Tsjerk
>
> --
> Tsjerk A. Wassenaar, Ph.D.
--
Thomas
le "/usr/lib/python2.7/dist-packages/chempy/__init__.py", line 59,
> in __getattr__
> raise AttributeError(attr)
> AttributeError: properties
>
> Any help would be appreciated.
>
>
> Regards,
> Arthur
>
>
> On 25.09.2015 01:50, Thomas Holder wrote:
>>
peg_encode_err =
> os.popen3(_mpeg_encode_exe)
>
> WindowsError: [Error 2] The system cannot find the file specified: 'Ex:
> C\\Temp /c "C:\\Program Files\\PyMOLPyMOL\\ext\\bin\\mpeg_encode.exe"'
>
> pro
F pymol: line 3: 17889 Segmentation fault. Could you help me to fix
> this please? Thanks. Beibei
--
Thomas Holder
PyMOL Principal Developer
Schrödinger, Inc.
--
___
PyMOL-users
em when zooming in.
Cheers,
Thomas
On 07 Oct 2015, at 09:48, Thomas Holder wrote:
> Hi Lucile,
>
> This picture looks unusual, can you give some details on how you created it?
> E.g. is this a full-atom protein structure, or a CA-only or pseudo-atom
> coarse grain model? Did you modi
ted and defunct now.
> pymolwiki.org/index.php/User:Speleo3/VMD_plugins
--
Thomas Holder
PyMOL Principal Developer
Schrödinger, Inc.
--
Full-scale, agent-less Infrastructure Monitoring from a single dashboard
Integrate with
ion an helix cartoon? (see attached picture)
> thanks in advance
> Lucile
>
>
--
Thomas Holder
PyMOL Principal Developer
Schrödinger, Inc.
--
Full-scale, agent-less Infrastructure Monitoring from a single
e the .mrc files if someone would like to take a look at them.
> They are too large to attach to this email (they bounced back from the pymol
> mail server).
>
>
> Thanks in advance for any help,
>
>
> Mike
>
> Michael F.
you reply, Thomas.
>
> Invoking
>
> alter all, ID = index
>
> didn't help.
>
> Regards,
>
> Vaheh Oganesyan
> www.medimmune.com
>
>
> -Original Message-
> From: Thomas Holder [mailto:thomas.hol...@schrodinger.com]
> Sent: Friday, Oct
ct1 is being chosen. Is it a bug in
> program or am I doing something wrong?
>
>
> Regards,
>
> Vaheh Oganesyan
> MedImmune, ADPE
> www.medimmune.com
--
Thom
sing the commercial version of
> Pymol. Pymol looses heteroatoms (zinc in my case) while morphing. Is
> there any way around this?
>
> (I tried replacing zinc with water and linking it to the protein using
> CONECT - didn't work)
>
> Thanks for your help.
> Kart
you can also crash many versions of pymol by making mistakes in
> the callback, such as passing a different name for the callback and the cgo
> object (yes, this is a silly thing to try, but it shouldn't crash).
>
> -Spencer
--
Tho
useful we can include that in the next PyMOL
release.
Cheers,
Thomas
'''
Adds a "load_pdbml" command to PyMOL.
(c) Thomas Holder, Schrodinger, LLC
'''
import os
from pymol import cmd
@cmd.extend
def load_pdbml(filename, object='', discrete=0
.471680.8
> #7278cc
>
> Where the first three columns are the x, y and z coordinates, the next three
> are the size of the object, and the last is the colour (which isn’t so
> important - neither is the size, reall
menu. I can open the
> program by double clicking on a pdb file and there are no issues.
>
> Current version is 1.7.6.2
>
> Any idea how to fix this? Might be my hardware but just wondering if others
> see this or there is a fix?
> J
so on. I am just wondering is it
> possible to display those properties in Pymol?
>
> Thank you very much
>
> Albert
--
Thomas Holder
PyMOL Principal Developer
Schrödinger, Inc.
--
___
uld label the absolute
> configuration (R/S) for a chiarity atom?
>
> Thank you very much.
>
> Albert
--
Thomas Holder
PyMOL Principal Developer
Schrödinger, Inc.
--
___
develop free resources to help
scientific progress and the community as a whole.
Details and application instructions can be found on
http://pymol.org/fellowship
The application deadline is November 1st, 2015.
We look forward to your submissions!
Cheers,
Thomas
--
Thomas Holder
PyMOL
? For instance:
>
> If I press keyboard "L", Pymol zoom to ligand binding pocket
> automatically
>
> Thanks a lot
>
> Albert
--
Thomas Holder
PyMOL Principal Developer
Schrödinger, Inc.
oms
>
> However, at the same time if I do:
> select H_100, name H100
> I get:
> selection "H100" defined with 2 atoms
> what means that the last character has been omitted.
>
> Of course I can work it out by naming atoms like: HH01 instead of H1000, but
> I
:
> Hello:
>
> I've colored object1 in various color in different regions. I am just
> wondering how can we copy the color scheme for object1 to object2?
> Object 2 is the same protein with object1 but with different conformations.
>
> Thank you very much
>
>
t; Dirk Kostrewa
> Gene Center Munich, A5.07
> Department of Biochemistry
> Ludwig-Maximilians-Universität München
> Feodor-Lynen-Str. 25
> D-81377 Munich
> Germany
> Phone: +49-89-2180-76845
> Fax:+49-89-2180-76999
> E-mai
that there are some polygons in frame would
> > also be appreciated. Say, if there was a way to detect that cartoon would
> > fail so that I can switch to a lines or nonbonded representation (I wish
> > that was the default fallback for cartoon).
> >
14 chains? It
> seems that they can not be named with repeated letters which have been used
> because this cause abnormality in display function in pymol. And identifier
> like "A1", "A2", etc, can not be used either because there is only one colum
> (colum 22) for the
.
Cheers,
Thomas
'''
(c) 2015, Thomas Holder, Schrodinger LLC
License: BSD-2
'''
from pymol import cmd
try:
get_raw_distances
except NameError:
try:
from psico.querying import get_raw_distances
except ImportError:
print 'please inst
tserv?
> Or if I’ve been blacklisted for some reason?
>
> Thanks,
>
> H. Adam Steinberg
> 7904 Bowman Rd
> Lodi, WI 53555
> 608/592-2366
--
Thomas Holder
PyMOL Principal Developer
Schrödinger, Inc.
eers,
Thomas
On 23 Jun 2015, at 18:04, Jordan Willis wrote:
> Wow that is so cool. Is there any drawbacks I can expect?
>
>
>> On Jun 23, 2015, at 1:44 PM, Thomas Holder
>> wrote:
>>
>> Hi Jordan,
>>
>> if you want to use MacPyMOL with other
compatible with pymol. Or more
> generally, how would one install third party libraries for use with pymol. If
> you don’t use pandas, I highly recommend it. It’s incredibly useful for
> manipulating data and it would be very handy to have with pymol scrips.
>
> Jordan
--
Thomas
ac PyMOL 1.7.4.4, and I have attempted to run the attached program. I
> know the program works on older versions, but I get the following error:
>
> AttributeError: 'module' object has no attribute 'extend'
>
> Does anyone know how to fix this?
&
PyMOL contains an incompatible import on PyMOL versions 1.7.3+.
> Thanks to Thomas Holder this is now fixed in github.
>
> In the next weeks we are going to try to get out a new release of CMview that
> contains the patch. In the meantime you can try using an older PyMOL version,
>
; {}”.format(residue[‘resnum’]),”b={}”.format(residue[‘value’]))
>>
>> This executes the alter command for each residue. For some reason, its
>> taking forever in my script. Is there something inherently inefficient about
>> alter? And is there anyway to fix it? Perhaps,
s, .05
> set valence, 2
> set valence_size, 0.2
> python
> preset.ball_and_stick("r. STI")
> python end
> orient r. STI
> and this is the PML script I use to render the model using POV-Ray:
>
> set ray_opaque_background, 0
> png 2HYY_img0001.png, dpi=500, ray=1, width
t;
> _
> Joel Tyndall, PhD
>
> Associate Professor in Medicinal Chemistry
> National School of Pharmacy
> University of Otago
> PO Box 56 Dunedin 9054
> New Zealand
> Skype: jtyndall
>
> > On Jun 1, 2015, at 1:32 PM, Emilia C. Arturo (Emily)
> > wrote:
> >
> > Hello.
> >
> > Does anyone know which version of SCWRL (backbone-dependent rotamer
> > library) is used in the educational-use-only version of PyMOL?
> >
there
> anyone from the community with time and capability willing to take this up
> and maintain this resource or are we just letting this wither away?
>
> Cheers,
>
> Carsten
>
> -Original Message-
> From: Thomas Holder [mailto:thomas.hol...@schrod
appendix on the modified script make sure to note what modifications I
> did versus what was there originally? Thanks.
--
Thomas Holder
PyMOL Principal Developer
Schrödinger, Inc.
--
with X11 forwarding enabled), it fails with some errors about
>> connecting to WindowServer And I can tell it actually tried to launch the
>> GUI very briefly, then returned to the command line to process the scripts.
>> Is this right? Can I run it remotely on another comp
Hi Justin,
the logo that Brenton is referring to isn't included in the Open-Source repo or
tarballs. It's only used with Mobile PyMOL and Incentive PyMOL.
Cheers,
Thomas
On 28 May 2015, at 14:16, Justin Lecher wrote:
> On 28/05/15 19:26, Thomas Holder wrote:
>> Hi Brent
f PyMOL's logo (i.e., this one), as
> I would like to upload it to Wikimedia Commons.
>
> Thanks for your time,
> Brenton
--
Thomas Holder
PyMOL
the sequence will
> appear only after clicking inside the viewer window. I don’t think either of
> the mentioned are special features. Can it be fixed, please?
>
> Thank you.
> Regards,
>
> Vaheh Oganesyan
> MedImmune, ADPE
> www.medimmune.
m. This yields a weired
> structure with very long, unwanted bonds.
> I tried to iterate over the first selection, to draw only
> bonds between an Pd atom and Si atoms which are within
> range to that Pd atom like
>
>iterate (n. pd),
for different scenes.
> Right now I am using 1.7.3, but was wondering if anything has changed in
> 1.7.6 in that regard? The issue is not new, but it would be nice if there
> would be a feature like this implemented.
>
> Cheers,
> Carsten
--
Thomas Holder
PyM
Hi Priyan,
I updated the wrapper, it now supports THESEUS 3.x:
https://github.com/speleo3/pymol-psico
Cheers,
Thomas
On 15 May 2015, at 07:26, Thomas Holder wrote:
> Hi Priyan,
>
> the wrapper fails because THESEUS 3.0.0 changed the output. I suggest to use
> THESEUS 2.x
, in theseus
> translations, rotations = _run_theseus(args, tempdir, preserve, quiet)
> File "/media/XTAL/pymol/modules/psico/fitting.py", line 648, in _run_theseus
> handle = open(os.path.join(tempdir, 'theseus_transf2.txt'))
> IOError: [Errno 2
gt;
> It seems to not be getting the right name for the background setting and
> is just putting in '6' instead.
>
>
> Thanks for your help,
> Matt Baumgartner
--
Thomas Holder
PyMOL Principal Developer
Schrödinger, Inc.
.I.
>
> Department of Cell and Molecular Biology
>
> Uppsala University
>
> Phone Number: (+46)073-678-5334
>
> mesguerra.org
>
> mauricio.esgue...@i
o has experience with
Python and the PyMOL API for writing an extension or plugin. Please contact me
if this sounds appealing to you.
Get DSSR from http://x3dna.org/
See it hooked up with JSmol: http://chemapps.stolaf.edu/jmol/jsmol/dssr.htm
Cheers,
Thomas
--
Thomas Holder
PyMOL Principal Deve
dl Lab
> Sanford-Burnham Medical Research Institute
> 10901 North Torrey Pines Road
> La Jolla, CA 92037, USA
> Phone: 858.646.3100 x 4216
> Email: blechtenb...@sanfordburnham.org
--
Thomas Holder
PyMOL Principal Developer
Schrödinger, Inc.
oad any XYZ file without segfault. However, the view keeps
> blinking during movement. It may also be of interest to note that I have used
> opencascade without any problems as a 3d rendering and cad visualization
> software on this same VM.
>
that PyMOL does compute the RMS along the trajectory if I
>> simply:
>> align trj, pdb1
>> as it is told in:
>> http://www.pymolwiki.org/index.php/Align
>> However, I am unable to get the list of RMS values printed out. How cou
s.
Cheers,
- The PyMOL Team at Schrödinger
--
Thomas Holder
PyMOL Principal Developer
Schrödinger, Inc.
--
One dashboard for servers and applications across Physical-Virtual-Cloud
Widest out-of-the-box monitoring suppor
with 72 atoms.
> PyMOL>alter all,segi=""
> Alter: modified 6110 atoms.
> PyMOL>alter all,chain=""
> Alter: modified 6110 atoms.
> PyMOL>rms_cur sel1,sel2
> ExecutiveRMS-Error: No atoms selected.
> PyMOL>rms_cur sel1,sel2
> ExecutiveRMS-Err
electron density) at a particular coordinates? I
> would like to know sigma value for a particular atom. Is there any way, using
> python, to achieve that?
>
> Best regards,
> Filip
--
Thomas Holder
PyMOL Prin
.ac.at/vasp/vasp/POSCAR_file.html;http://cms.mpi.univie.ac.at/vasp/vasp/CHGCAR_file.html
>
> Thanks very much for your help again.
>
> Best wishes
>
> On 24/04/2015, Thomas Holder wrote:
>> Hi Wei-Bing,
>>
>> support to load topology files with the vmd plugins was added
186 73108538
> E-mail: zhan...@csust.edu.cn, weibingzhang...@gmail.com
> ------
--
Thomas Holder
PyMOL Principal Developer
Schrödinger, Inc.
--
One dashboard for servers and applications across Physical-
> only for the person addressed. This email must not be forwarded to third
> parties without the express consent of the sender. If you believe you have
> received this email in error please inform the sender and remove it
lows (Using MacPyMOL 1.7.4):
>
> fetch 4rp9, type=pdb1
> split_states 4rp9
> alter 4rp9_0002, chain = 'B'
> create joined, 4rp9_* and resi 282
>
> I've tried various combinations of the rebuild and sort commands, as well as
> man
elf.font,8)
> ./python2.7/dist-packages/pmg_tk/skins/normal/__init__.py:427:
> self.my_fw_font=(self.font,10)
> ./python2.7/dist-packages/pmg_tk/skins/normal/__init__.py:429:
> text.configure(font = self.my_fw_font)
> Il file binario ./python2.7/dist-packages/pmg_tk/skin
rt_version, 1.74
save session.pse
There are limitations. For details, see:
http://pymolwiki.org/index.php/pse_export_version
Cheers,
Thomas
On 08 Apr 2015, at 15:12, Thomas Holder wrote:
> Hi Matt,
>
> there might be room for improvement regarding our versioning scheme.
> Nev
Mol package is
> perhaps broken.
> I will do an extensive testing and be back with information.
> Is there a self-sustaining package in your website that can run on its
> own, just like Geogebra independent package?
> Regards,
> Rajib & Yuktimmana
>
> On 04/20/2
n do this, then this, ... to build
> one molecule from scratch.
> Regards,
> Rajib & Yuktimmana
>
> On 04/19/2015 07:28 PM, Thomas Holder wrote:
>> Hi Rajib & Yuktimmana,
>>
>> you can interactively build molecules using the builder:
>>
>>
ride, or butylene?
> Eagerly awaiting your reply,
> Rajib & Yuktimmana
--
Thomas Holder
PyMOL Principal Developer
Schrödinger, Inc.
--
BPM Camp - Free Virtual Workshop May 6th at 10am PDT/1PM EDT
Develop your own
nual I loose plugin control.
> Just wondering if there is a way to have the “open” file starting from the
> working directory with the fancy interface of MacPyMol, rather than the basic
> Unix interface.
>
> Thanks,
> gg-kawa
--
Thomas Holder
PyMOL Principal Developer
Schröding
to
> select all equivalent chains with a simple statement.
>
> Cheers,
>
> Tsjerk
> On Thu, Apr 9, 2015 at 6:48 PM, Thomas Holder
> wrote:
> Hi all,
>
> I'm working on reading biological assemblies from mmCIF files. The patch
> against the latest SVN
name CA+C1*+C1' and ( byres ( ss )<--
> Selector-Error: Misplaced ).
> Selector-Error: Malformed selection.
> ( ss )<--
>
>
> James
--
Thomas Holder
PyMOL Principal Developer
Schrödinger, Inc.
-
ions in which the number of atoms remains constant, I've never had
> this problem.
>
> This occurs both when I run on Linux (Version 1.7.0.0) or on a Mac (Version
> 1.7.2.1).
>
> Any help would be greatly appreciated. Both pdb files are attached.
>
> Efrem Braun
--
s a clear difference and I can inform my collaborators not
> to update past 1.7.4.
>
>
> On 4/8/15 2:38 PM, Thomas Holder wrote:
>> Hi Matt,
>>
>> PyMOL session files are in general not "forward compatible".
>>
>> See for example:
>> ht
ognized object "1ycr" of type 10613678.
> ExectiveSetSession-Error: after names.
> ExectiveSetSession-Warning: restore may be incomplete.
>
>
> Any idea what is wrong, or do I need to downgrade back to 1.7.4?
t (the original script had
> cmd.rotate('y',6) instead of cmd.zoom...) I have created based on input from
> others on this mailing list.
>
> Thanks for your time,
> Brenton
--
Thomas Holder
PyMOL Principal Developer
Schrödinger, Inc.
not a full version of PyMOL and is not intended as a free replacement
for academic PyMOL licenses.
Cheers,
Thomas
--
Thomas Holder
PyMOL Principal Developer
Schrödinger, Inc.
--
Dive into the World of Parallel Progra
d go there. The --std=c++11x flag as the name suggests is
> only for CXX code. So adding --std=c++11x to CXXFLAGS would be more
> appropriate. Works here on Gentoo systems flawlessly.
>
> Justin
--
Thomas Holder
PyMOL Principal Developer
Schrödinger, Inc.
---
Incentive PyMOL 1.7.4.4 fixes this problem.
Cheers,
Thomas
On 13 Mar 2015, at 23:55, Thomas Holder wrote:
> The latest update to SVN fixes the ring color problem.
>
> Cheers,
> Thomas
>
> H. Adam Steinberg wrote, On 03/10/15 10:39:
>> Thank you!
>>
>>&
The latest update to SVN fixes this.
Cheers,
Thomas
Thomas Holder wrote, On 03/06/15 15:35:
> Hi Matt,
>
> thanks for the bug report. If you use the command line instead, it
> works if you put the group name in parenthesis, which forces PyMOL to
> treat it as an atom select
The latest update to SVN fixes the ring color problem.
Cheers,
Thomas
H. Adam Steinberg wrote, On 03/10/15 10:39:
> Thank you!
>
>> On Mar 10, 2015, at 9:07 AM, Thomas Holder
>> wrote:
>>
>> Hi Quentin, Adam, David, Francis,
>>
>> I just looked at t
, so to compile, you might need:
export CPPFLAGS="-std=c++0x"
Cheers,
Thomas
--
Thomas Holder
PyMOL Principal Developer
Schrödinger, Inc.
--
Dive into the World of Parallel Programming The Go Parallel W
Open Source Fellowship Program and the fellows here
http://pymol.org/fellowship.
Cheers,
Thomas & the PyMOL Team at Schrödinger
--
Thomas Holder
PyMOL Principal Developer
Schrödinger, Inc.
--
Dive into the World of
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