h Russ, and report to gpc-dev
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sql#L33
epic_meds_transform.sql]
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:
Keywords: | Blocked By:
Blocking: |
-+--
Comment (by dconnolly):
Tom: ok, I can follow up on this.
(gpc-dev today)
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are distributed as json and translated to match the appropriate
environment.
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:
Keywords: | Blocked By: 381, 486
Blocking: 510 |
-+
Changes (by lv):
* owner: prakashnadkarni => jdale
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| Resolution:
Keywords: | Blocked By: 381, 486
Blocking: 510 |
-+
Changes (by jdale):
* owner: jdale => jay.pedersen
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:
Keywords: | Blocked By: 381, 486
Blocking: 510 |
-+
Changes (by lv):
* owner: jay.pedersen => preeder
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thonThree#agenda and Russ
contributed HackathonThree#PIAgendaTopics, so that's our proposal for a
detailed agenda.
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fixed
Comment:
Jim Campbell asked me to close this ticket as we are proceeding direct to
CDM V3.
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ed.
3. Inconsistency in weight data was related also to an error in our
extract procedure which we have corrected
Jim
James R. Campbell MD
campb...@unmc.edu
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. If the issue is
addressed, very well. But otherwise, please re-open this and change the
summary.
(If trac doesn't seem to let you change ticket summaries, let me know and
I'll do it.)
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Not asked | tobacco:06
\i2b2\PCORnet Vital Signs\Tobacco\No Information | tobacco:NI
\i2b2\PCORnet Vital Signs\Tobacco\Other | tobacco:OT
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| Resolution:
Keywords: | Blocked By: 381, 486
Blocking: 510 |
-+
Changes (by lv):
* owner: preeder => campbell
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Batch modification to #201, #76 by dconnolly:
milestone to
Comment:
preparing to close milestone:data-domains3, as #473 is nearly done
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Batch modification to #455, #155, #503, #504 by dconnolly:
milestone to gpc-phase2-h2
Comment:
preparing to close milestone:data-domains3, as #473 is nearly done
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rnance around data.
Per GPC DSA have allowances to run queries around de-identified dates.
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ign for this query depends on
our design for smoking status #267
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it make sense to cc her on this ticket.
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: | Blocked By:
Blocking: |
---+
Changes (by ngraham):
* cc: mprittie (added)
Comment:
Adding Mike on CC as he's been working on this at KU.
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to the CDM and still
be useful.
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ris for
MCW. Kris, please assign to UTHSCSA next.
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orkplan
they are described as “unexpected conditions”)
• Locked/static data
• Will need to submit an ETL ADD with their query response (the template
is on our Data Characterization wiki)
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Updating with date for CMH.
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eciate it if "our Data Characterization wiki" were a link.
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. Nebraska needs to move down on
the priority list of GPC sites implementing V3.
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query response (the template
is on our Data Characterization wiki)
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Buzalko.
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an ETL ADD with their query response (the template
is on our Data Characterization wiki)
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:
Keywords: CDM V3| Blocked By: 283, 381, 436
Blocking:|
--+---
Changes (by lv):
* status: assigned => accepted
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-sharing | Resolution:
Keywords:| Blocked By:
Blocking: 263 |
--+
Changes (by kosinski):
* owner: abos => bos
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to share the ADAPTABLE queries in GPC
terminologies on babel.
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-sharing | Resolution:
Keywords:| Blocked By:
Blocking: 263 |
--+
Changes (by kosinski):
* owner: kosinski => abos
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ack to Tom to resume gathering results.
(The Oracle code is tracked separately as #366, currently closed.)
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JRC in ticket:266#comment:10)
I see:
Requirements for ‘research-ready’: ... No date obfuscation
''separating this out of #26, which is about sharing datasets between GPC
sites''
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ent:20):
> ... Steve will follow up with Russ, and communicate with the IRB group.
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to be in the someday pile, let's
make one or more new milestones to represent who wants them done and when.
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one. Let's
try Feb 15. Tom, if you have a better guess, please let us know.
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far we have reviewed 10 out
of 20 patient charts.
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e for UTHSCSA, per email from Alex.
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xed =>
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V3
Comment:
Per Dan's comments...spoke with Jim Campbell and he agreed to reopen.
Will change to V3.
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that were used in the query
are Stenosis Percent, Prior MI and Prior CABG.
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xed =>
Comment:
Phillip: Tom Mish reached out to you to obtain the cohort demographics
from UTSW. Please provide secure link to Tom so I can provide complete
information to PCORI.
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news, I moved the due date for milestone:data-quality-q3
from Feb 15 to Feb 29.
The relevance to Q4 2015 is fading; we probably should have started on Q1
2016 by now.
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As far as I can tell, this isn't interestingly different from #473.
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for UTHSCSA to fix some things and re-run by
Feb 16 (comment:8).
I suppose given the negative result from KUMC (#476) we owe an update ETA.
Our internal schedule says March 16.
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CSA is currently using algorithmic enrollment criteria of 2
visits within the past 3 years at least 30 days apart.
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ave a HARVEST table (ref #476).
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: | Blocked By:
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---+
Comment (by nateapathy):
OK - we will use C4 and CMH for the NETWORK_ID and DATAMART_ID,
respectively. Thanks!
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don't currently plan to fix this. If it proves to be an unacceptable
limitation, we can reconsider.
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he phenotype
For details on the computable phenotype, see #263
''Dan, reporting for Sravani''
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unt(*) qty, enc_type
from encounter
group by enc_type
) et
cross join all_enc
;
}}}
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pirin" a
workaround for sites that can't exclude on aspirin allergies?
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_
m inclined to wait till I get a confirmation from our site lead before
I make any further changes to the query.
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built LAB_RESULT_CM.
All that remains is some observable way to test the data at our sites
(#285).
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adding
the file. I need to add the file after you or someone sets it back to
“Incomplete”. Who is the contact person to reset the request?
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with me to benchmark those queries in
Netezza this week as well, and will most likely use this code to create
the Postgres branch since Netezza SQL grammar is based on Postgres.
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267, 444, 495
Comment:
I think the outcome of our 29 March call (#12) is that while chart review
(#462) isn't finished, we've done enough for the purpose of query design.
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pulate CDM from Clarity. #464
is a ticket to share it
- DevTeams#unmc - using another approach due to some issue around ONC
standard coding that wasn't entirely clear at the time. #455 was assigned
to elaborate
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- Included patients on Aspirin
Updated query can be found in the ADAPTABLE shared folder in Babel with
the name ADAPTABLE_W_NCDR_03172016. There is also a modified version of
the same query without the NCDR.
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to confirm
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, measure_time, admit_date
);
}}}
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ADD to talk about this, but we're not
confident about our answer. We're following up with Russ.
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tie
Comment:
Mike, while our core DC work (#486) is stalled on infrastructure issues,
please look into the labs table.
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that we have not figured out a way to reconcile the CDM's notion of
same/different encounter (comment:9) with HERON's?
See also ticket:486#comment:19 by Bos 14 Mar and Matt's reply.
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:20) to get the number somewhat
higher. Meanwhile...
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ent:10); the Data
Characterization wiki may have more up-to-date materials.
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replacing out-of-date schedule in ticket description with pointer(s) to
definitive info.
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ORnet wide agreements)
will be taken into account.
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-668-8017 | cell: 336-255-3231
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licate
Comment:
overtaken by #473
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t;http://informatics.gpcnetwork.org/trac/Project/ticket/473#comment:29>
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want answered?
KUMC's status on DC is in #486 and DQ is #476.
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Ticket URL:
<http://informatics.gpcnetwork.org/trac/Project/ticket/473#comment:26>
gpc-informatics <http://informatics.gpcnetwork.org/>
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/trac/Project/milestone/next-d Next-d]
will also use HbA1c across participating GPC sites.
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Ticket URL:
<http://informatics.gpcnetwork.org/trac/Project/ticket/285#comment:5>
gpc-informatics <http://informatics.gpcnetwork.org/>
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URL:
<http://informatics.gpcnetwork.org/trac/Project/ticket/267#comment:15>
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tps://github.com/njgraham/i2p-transform i2p-
transform] I plan to proceed with our CDM V1 approach that at least
categorized 20-30% of the encounters (as I vaguely recall).
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Ticket URL:
<http://informatics.gpcnetwork.org/trac/Project/ticket/155#comment:16>
gpc-informat
/njgraham/i2p-
transform/commit/ac34c7e06dd68a2293ffb55aa1e9c0d5d655e71a ac34c7e]
Once we run the transform against production data we can see how much
coverage we have.
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<http://informatics.gpcnetwork.org/trac/Project/ticket/155#comment:17>
gpc-informatics
, 3.28.16 (moved up from previous 4.11.16
date).
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Ticket URL:
<http://informatics.gpcnetwork.org/trac/Project/ticket/473#comment:33>
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March call #12)
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Ticket URL:
<http://informatics.gpcnetwork.org/trac/Project/ticket/263#comment:39>
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.
--Mosa
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ct/ticket/267#comment:22>
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ution is via popmednet" isn't 100% clear.
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