t; set cartoon_ring_mode,3
>>> set cartoon_ring_finder,2
>>>
>>> Thanks in advance for any help!
>>> Quentin
>>>
>>> Quentin Vicens
>>> Tél : +33 (0)3 88 41 70 42
>>> Tél 2 : +33 (0)7 61 37 83 10
>>> Fax : +33 (0)3
6, 64 bit (PyMol v.1.7.2.4). Could anybody suggest the way to
> overcome, please?
>
> Sincerely,
> Niyaz
--
Thomas Holder
PyMOL Principal Developer
Schrödinger, Inc.
--
Dive into the World of Parallel Programmi
I'm using pymol 1.7.4.0.
> The A> assign sec. struct. command doesn't seem to work when you call it
> on a group. It works fine on the objects in the group individually, but
> it doesn't apply the command to the objects when called from a group.
>
> Thanks,
&
t; device.
> 2015-02-19 17:36:38.357 MacPyMOL[46379:507] HID: Max number of buttons found:
> 3.
> PyMOL>import scipy.linalg.fblas
> Fatal Python error: PyThreadState_Get: no current thread
> Abort trap: 6
>
> If you
properties file for the PyMOL syntax
> for use in SciTE. Currently I'm using python .properties for
> highlighting PyMOL code but as you's know PyMOL syntax isn't 100%
> consistent with python syntax.
>
> Thanks for your time,
> Brenton
--
Thom
cs and Computational Biology
> 111 Lab and Office Building
> Iowa State University, 50010
--
Thomas Holder
PyMOL Principal Developer
Schrödinger, Inc.
--
Dive into the World of Parallel Programming The Go Parallel We
6140 B3 LIG 978 119.340 130.290 108.590 1.00 0.00
> ...
>
> thank you for your help.
> best
> Vincent
>
>
> --
> Vincent Chaptal, PhD
> Institut de Biologie et Chimie des Protéines
> Drug-resis
Hi all,
Incentive PyMOL 1.7.4.3 is up which fixes the wall-eye stereo bug.
Cheers,
Thomas
On 22 Feb 2015, at 16:46, Thomas Holder wrote:
> Hi Steve,
>
> bug confirmed, thanks for reporting. We'll look into this ASAP.
>
> I recommend to downgrade to 1.7.4.1.
>
>
nd and create two new ones, and from
> that moment proceed with the new bonds' topology - so I can render every
> frame with a correct bonds network.
>
> Moreover my trajectory files are usually too large to use "split_states".
>
> Any ideas how to work this problem
York, NY 10016
> phone: 212-263-8938
> fax: 212-263-8951
> http://hubbard-lab.med.nyu.edu
--
Thomas Holder
PyMOL Principal Developer
Schrödinger, Inc.
--
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du.app/pymol/modules/pymol/selecting.py",
>> line 103, in select
>> selection = selector.process(selection)
>> File
>> "/Users/Simon/Downloads/MacPyMOLEdu.app/pymol/modules/pymol/selector.py",
>> line 113,
f, map, 1
>
> Any ideas? It is run in Pymol 1.7.4.0 on a computer with Windows 7 and 4GB
> memory. Thanks.
>
> Yuxing Liao
>
> UT Southwestern
>
> Medical Center
>
> The future of medicine, today.
--
Thomas Holder
PyMOL Principal Developer
Schrödinger, In
nly. I tried to set the sphere to be transparency by the command "set
> sphere_transparency, 0.5". However, the surface of the sphere shows some
> shading which looks quite odd. If I ray trace the image, the surface looks
> nice but it is solid rather than transparent. Any sugges
> following commands:
>
> load sessionA.pse
> load sessionB.pse, partial=1
>
> These commands indeed merge the two sessions but ALL named selections in
> sessionB.pse are lost.
>
> Thank you,
> Hugo
--
Thomas Holder
PyMOL Principal Developer
Schrödinger
egions of a protein structure? If Yes, then what is wrong with the
> command
> set cartoon_highlight_color, yellow, /Unwin_4Ang_2bg9//B
>
> What is the correct syntax for applying cartoon_highlight_color to specific
> selections of a protein?
>
&
ms involved
> in the contacts are no longer automatically selected. Is there a setting that
> I need to change?
>
> Regards,
> Sze Yi
--
Thomas Holder
PyMOL Principal Developer
Schrödinger, Inc.
--
Dive into
> layer3/Selector.cpp: In function ‘int SelectorLoadCoords(PyMOLGlobals*,
> PyObject*, int, int)’:
> layer3/Selector.cpp:6705:9: warning: ‘itemsize’ may be used
> uninitialized in this function [-Wmaybe-uninitialized]
> switch(itemsize) {
> ^
>
ot import script.py from .pymolrc.py, everything works as expected.
>
> Apparently, loading of a new session file creates a new instance of the
> pymol.session object. Shouldn't the pymol.session instance be created
> once upon startup, so it can be shared between all scripts?
catch this by detecting when the dialog is open and if another
> one tries to open, call raise() on the original one.
>
> I'm running pymol 1.7.4.0, revision 4107 from the SVN built from source
> on Ubuntu 14.04.
--
Thomas Holder
PyMOL Principal Developer
Schrödinger, Inc.
-
find default location for file: pdb2pqr.py
> I manually set up the paths but they get lost when I exit pymol.
> Is there a way to permanently store this information?
>
> Kind regards,
> Matic
>
> On 28. 01. 2015 16:58, Thomas Holder wrote:
>> Dear Matic,
>
2015 at 4:59 PM, Monica Mittal
> wrote:
> Hi,
> Does any one know if there is a simple way to mutate a serine to a
> phosphoserine using pymol? Or what would be the best way to achieve this?
> Thanks
gt; group.pack(fill='both',expand=1, padx=4, pady=5)
> File "", line 1, in pack
> None
> File "/sw/lib/python2.7/lib-tk/Tkinter.py", line 1887, in pack_configure
> + self._options(cnf, kw))
> : cannot use geometry manager pack inside
>
University of Cambridge
> Department of Biochemistry
> 80 Tennis Court Road
> CB2 1GA Cambridge
> United Kingdom
--
Thomas Holder
PyMOL Principal Developer
Schrödinger, Inc.
--
New Year. New Location. New Bene
dably match structurally
> superimposed CA’s besides a distance criterion, which does not seem to be to
> reliable in the case of large deviations. I tried to snoop around in the
> alignment object created by the align command, but
2.7/site-packages/iotbx/pymol.py
/Applications/Chimera.app/Contents/Resources/share/Molecule/copymolecule.py
/sw/lib/cctbx/cctbx_sources/iotbx/pymol.py
... and many more ...
--
Thomas Holder
PyMOL Principal Developer
Schrödinger, Inc.
ks in advance,
>
> Louis-Philippe Morency
> Étudiant au doctorat || PhD student
> Laboratoire du Pr Rafael Najmanovich
> Faculté de Médecine et des Sciences de la Santé (FMSS)
> Université de Sherbrooke
>
ething?
>
> Thanks
>
> Floris
>
> On 09-01-15 16:55, Sampson, Jared wrote:
>> set spec_reflect, 0, all and not organic
--
Thomas Holder
PyMOL Principal Developer
Schrödinger, Inc.
--
New Year. N
54, Sunyeping wrote:
> Dear all,
>
> I have a protein complex which contains two subunit. How can I measure the
> angle between these to subunit? Thanks
>
> Yeping Sun
>
> Institute of Microbiology, Chinese Academy of Sciences
--
Thomas Holde
9, Daniel Larsson wrote:
> I have created a pseudo-low resolution electron density map from a PDB-file
> using the map_new command. Is it possible to export or save that map to a
> file? Any format should be fine.
>
> Daniel
about the Goodsell-like representation from here?
>
> Cheers,
>
> Osvaldo.
>
> On Tue, Jan 13, 2015 at 7:29 AM, Jacob Lewis wrote:
>
> Hi all,
>
> Has anyone figured out a good way to do Cel shading in pymol? Or even the
> sort of variables to play with?
>
>
> Optimize plug-in needs openbabel to be installed in your system, please
> follow the instructions at
> http://openbabel.org/wiki/Get_Open_Babel
>
> >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>&g
scope
>
> (RHEL 6.3 64-bit)
>
>
> Andreas
>
> --
> Andreas Förster
>X-ray Crystallography Facility Manager
>Centre for Structural Biology
> Imperial College London
--
The PyMOL Team at Schrödinger
--
Thomas Holder
PyMOL Principal Developer
Schrödinger, Inc.
--
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from Actuate! Instantly Supercharge Your Business Reports and D
can read more about
the PyMOL Open Source Fellowship Program and the fellows here
http://pymol.org/fellowship.
Cheers,
Thomas & the PyMOL Team at Schrödinger
--
Thomas Holder
PyMOL Principal Developer
Schrödinger,
cPyMOL 1.6 and 1.7, with both X11 and aqua, and on Mac
> OS 10.9 and 10.10.
>
> I discovered this problem because importing the full pymol script repo
> crashes, due to the pyanm plugin. Maybe this will save someone a headache in
> the future.
>
> -Spencer
--
Thomas Hold
i, Nov 14, 2014 at 10:25 PM, Osvaldo Martin
> wrote:
> Hi,
>
> Exactly which algorithm is behind the super command? How the outliers pairs
> are defined? The is some scientific paper related to super or it is really
> an experimental idea?
>
ow, it would be nice to have a indication on
> wiki.pymol.org that the information is not fully up-to-date (e.g. through a
> sitenotice).
>
> -Spencer
--
Thomas Holder
PyMOL Principal Developer
Schrödinger, Inc.
/CNRS
> 15 rue René Descartes
> 67084 Strasbourg Cedex
>
> p.auffin...@ibmc-cnrs.unistra.fr <mailto:p.auffin...@ibmc-cnrs.unistra.fr>
> --
--
Thomas Holder
PyMOL Developer
Schrödinger, Inc.
--
Download B
e overlapped lipids detected within
> some cutoff radios of the protein.
>
> Thanks for help,
>
> James
--
Thomas Holder
PyMOL Developer
Schrödinger, Inc.
--
Comprehensive Server Monitoring with Site24x7
Thanks a lot,
>
> Pascal
>
>
> -
> Pascal Auffinger
> IBMC/CNRS
> 15 rue René Descartes
> 67084 Strasbourg Cedex
>
> p.auffin...@ibmc-cnrs.unistra.fr
> -
--
Thomas Holder
PyMOL Developer
Schrödinger, Inc.
-working Edu PyMOL.
Cheers,
Thomas
On 19 Oct 2014, at 09:29, Thomas Holder wrote:
> Update: We got positive feedback from several Yosemite users that the
> latest MacPyMOL works fine for them. The X11Hybrid version works after
> reinstalling XQuartz. Users have also been successfull t
st-packages/pymol-1.7.3.1.egg-info
> copying data -> /usr/local/lib/python2.7/dist-packages/pymol/pymol_path/data
> copying test -> /usr/local/lib/python2.7/dist-packages/pymol/pymol_path/test
> copying scripts ->
> /usr/local/lib/python2.7/dist-packages/pymol/pym
Markus, I'll create an account for you.
Cheers,
Thomas
On 20 Oct 2014, at 14:33, Markus Heller wrote:
> Would if I could.
>
> How do I sign up for the PyMOLWiki?
>
> THanks
> Markus
>
> -Original Message-
> From: Thomas Holder [mailto:thomas
> 0.38
>>>
>>> align pdb1, pdb2 and name ca, cycles=0
>>> 0.05
>>>
>>> align pdb1, pdb2 and name ca+cb+c+n, cycles=0
>>> 0.07
>>>
>>>
>>> align pdb1, pdb2 and name ca+cb+c+n+o, cycles=0
>>> 9.8
>>
the O atom increases the RMSD so much esp when
> all atom RMSD is only 0.38A.
>
> Thank you
--
Thomas Holder
PyMOL Developer
Schrödinger, Inc.
--
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andard XML interchange file format which is supported by many 3D
graphics applications.
COLLADA export support in PyMOL is available as of SVN rev 4097.
Congratulations Jared to this very successful project and thank you for
your open-source contribution!
Cheers,
Thomas
--
Thomas Holder
PyMOL
t; Is it possible to get the color code of each residue if I color
> the whole molecule by B-factor using spectrum? I would like to
> make a figure with the same colors on the primary sequence.
>
> Thank you so much in advance.
>
LigPlot+. Would it be possible that PyMOL automatically finds this file, say
> by reading $compcif or some such variable?
>
> Thanks.
> Andreas
>
> On 16/10/2014 10:08, Thomas Holder wrote:
>> Dear all,
>>
>> this is for those who like to use the latest Open-Source
applications under
Yosemite useful:
http://www.macinchem.org/blog/files/0f5cfea643bdf4d2dfcae3991300b886-1611.php
Chees,
Thomas
Thomas Holder wrote, On 10/18/14 08:01:
> Dear Mac Users,
>
> if you are thinking about upgrading your Mac to OSX 10.10 Yosemite,
> please do yourself a favour and
work, neither does the free
students version. We are working on it. Also feel free to drop me a line if you
have already upgraded and PyMOL works fine for you or you found a workaround
for any kind of issue.
Thanks,
Thomas
--
Thomas Holder
PyMOL Developer
Schrödinger, Inc
ny kind of testing and feedback.
Cheers,
Thomas
--
Thomas Holder
PyMOL Developer
Schrödinger, Inc.
--
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y version
> from ...
>
> Cheers
> Markus
>
> -Original Message-
> From: Thomas Holder [mailto:thomas.hol...@schrodinger.com]
> Sent: Thursday, October 16, 2014 10:44 AM
> To: Markus Heller
> Cc: pymol-users@lists.sourceforge.net
> Subject: Re: [PyMOL] h_add brea
elect all to avoid little pink squares
> deselect
>
> # hide non-polar hydrogens
> hide (h. and (e. c extend 1))
>
> # finally, raytrace and save a PNG
> ray
> png broken_surf.png
>
>
>
> -Original Message-
> From: Thomas Holder [mailto:thomas.h
.D.
> NMR Scientist
> CDRD - The Centre for Drug Research and Development
> 2405 Wesbrook Mall, Fourth Floor | Vancouver, BC V6T 1Z3 | Main: (604)
> 827-1147
> Direct: (604) 827-1122 | F: (604) 827-1299 | E: mhel.
Greetings,
today we released Incentive PyMOL 1.7.2.3, which fixes the dots ray tracing
bug. Installers can be downloaded from http://pymol.org/download
Cheers,
Thomas
On 13 Oct 2014, at 16:22, Thomas Holder wrote:
> Hi Colin,
>
> thanks for the bug report, I can confirm that ra
iversity
> to buy an Institute license so everyone, including students, could use
> it).
>
> cheers,
> Doug
>
>
>
> Quoting Thomas Holder on Mon, 13 Oct
> 2014 18:21:14 -0400:
>
>> Hi Doug,
>>
>> to answer your question, Schrödinger is not work
gt;
>> On Sun, Jan 17, 2010 at 5:20 AM, Tsjerk Wassenaar wrote:
>>> Hi Jason,
>>>
>>> Now what will come first? Pymol viewer for Android, for Mobile Windows
>>> or for iPhone? Would be so cool to show off at a conference, and use
>>> multi-to
y
> MIB G034
> Tel. 0161 275 5090
> Mob.07786 197 554
> c.l...@manchester.ac.uk
--
Thomas Holder
PyMOL Developer
Schrödinger, Inc.
--
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Monitor 10 servers
t; reverts to the list-type when I press the return key…
> This looks related to an existing thread
> (http://sourceforge.net/p/pymol/mailman/message/31473011/), where the final
> post suggests those issues were resolved in rev. 4043.
>
> Any help/advice would be greatly apprecia
incentive for use in
>>scripts. I'm thinking of something similar to
>> 'cmd.get_version()'.
>>
>>The reason for this is that I am e.g. using the 'alter'
>>command on custom properties in scripts, w
t; clearly indicating the disordered regions, but now in a 3D ray-traced dashed
>> line that follows the cartoon trajectory rather than the usual penciled in
>> job.
>>
>> I know in building a new
--
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PyMOL Developer
Schrödinger, Inc.
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licized etc. This would be like asking pymol to read sequence
> from SEQRES section and compare it to sequence from the section where
> coordinates are.
>
> I am sorry if such a post/request has already been made but I could not find
> it. Please suggest/direct.
>
> Thank you.
s "start_point" and "end_point" by
>> center_of_mass.py. I load an object "tunnel" which has a sets of atoms
>> in one chain.
>> I want to measure the angle from each atoms in "tunnel" to "end_point"
>> to "start_point&q
>>
>> Joel Tyndall, PhD
>>
>> Associate Professor in Medicinal Chemistry
>> National School of Pharmacy
>> University of Otago
>> PO Box 56 Dunedin 9054
>> New Zealand
>>
>> Skype: jtyndall
>>
>> Ph: +64 3 479 7293
--
Tho
plans to support 4-letter chain IDs, as defined by the current
> xPDB/mmCIF specification?
>
> -Spencer
>
> On Tue, Sep 16, 2014 at 3:36 PM, Thomas Holder
> wrote:
> Hi Folmer and Yeping,
>
> to support upper and lower case letters, set this setting:
>
>
0:41 GMT+02:00 sunyeping :
> I have a protein which contains 32 chains. By using A-Z can only name 26
> chains. Can I use expression containing two character such as A1, AB, etc. to
> as chain id? Will this change the format of the pdb files?
>
> Yeping Sun
>
> Institute of Mi
ue background off", and decomment
>> it when I ray trace the image, but it would be nice to have the full
>> settings working initially without having to edit too much the .pml ...)
>> thanks
>> Vincent
>>
> --
> Vincent Chaptal, PhD
> Institut de Bio
em on a Windows
> computer.
>
> Bernhard
>
>
> Bernhard C. Lechtenberg, PhD
> Postdoctoral Fellow
> Riedl Lab
> Sanford-Burnham Medical Research Institute
> 10901 North Torrey Pines Road
> La Jolla, CA 9203
Manager
> Centre for Structural Biology
> Imperial College London
--
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PyMOL Developer
Schrödinger, Inc.
--
Want excitement?
Manually upgrade your production database.
s a,
> b, c.
>
> Can someone give any solution to this problem? I am using pymol 1.7.2.1 in
> windows 8.1
> Best regards,
> Hena
--
Thomas Holder
PyMOL Developer
Schrödinger, Inc.
--
Want ex
t;
>>>> such pattern are always produced by grep
>>>> so I'd like that tarr_se.pdb: have not been included (of course I can it
>>>> remove easily after merging but this step is not good for me :) )
>>>>
>>>> Also i'll be very thankful fo
develop free resources to help
scientific progress and the community as a whole.
Details and application instructions can be found on
http://pymol.org/fellowship
The application deadline is November 1st, 2014.
We look forward to your submissions!
Cheers,
Thomas
--
Thomas Holder
PyMOL Developer
--
> Peter C. Kahn, Ph.D.
> Professor of Biochemistry
> Department of Biochemistry & Microbiology
> Rutgers University
> 76 Lipman Drive
> New Brunswick, NJ 08901
>
> NOTE NEW TELEPHONE NUMBER: 848-9
ner wrote:
> Hi,
> I am running version 1.7.2.1 from the svn (revision 4088) and the bug
> with dynamic_measures persists. Unsetting it as in that link corrects
> that issue though.
>
> I can send you my files that find the error if you would like.
>
> Matt
>
> On
, chain id, and residue ID, but I don't know
> how feasible that is.
>
> The work around that I have found is to pass the receptor through babel
> after processing with reduce. babel prot.pdb prot2.pdb , which
> re-indexes the atom ids.
>
>
;
> On Aug 25, 2014, at 9:57 AM, Hena Dutta wrote:
>
>> Hi,
>> I am trying to change the cartoon oval length using the command
>> set cartoon_oval_length, 0.6
>> But, it is not showing any change. I am using pymol 1.6.0.0 in
x27; % res_num)
> cmd.select('D', 'resi %s and name C' % res_num)
> return cmd.get_dihedral('A', 'B', 'C', 'D')
> else:
> return float('nan')
>
> and I get the error "'mod
häftsführer: Prof. Dr. Günther Wess, Dr. Nikolaus Blum, Dr. Alfons Enhsen
> Registergericht: Amtsgericht München HRB 6466
> USt-IdNr: DE 129521671
--
Thomas Holder
PyMOL Developer
Schrödinger, Inc.
-
ource version.
>
> Should the feature be made available to open source version users?
> cheers,
> Hongbo
--
Thomas Holder
PyMOL Developer
Schrödinger, Inc.
--
___
e/hansonr
>
>
> If nature does not answer first what we want,
> it is better to take what answer we get.
>
> -- Josiah Willard Gibbs, Lecture XXX, Monday, F
2014, at 16:48, Thomas Holder wrote:
> Hi Justin,
>
> this is a good find, and clearly illustrated by your script (I wish all bug
> reports would come with such a script!). I looked into this and found that
> PyMOL, when it carves out the selection, sets all the masked map v
89938176,\
> 0.754581511,0.487090826,0.439703643,\
> 0.000163982,0.30157, -17.993944168,\
> 16.466907501, -2.307159424, -22.514865875,\
> 13.251377106, 22.765058517, -20.00000 )
>
> Sincerely,
> Justin
ack and bug reports.
Cheers,
- The PyMOL Team at Schrödinger
--
Thomas Holder
PyMOL Developer
Schrödinger, Inc.
--
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Build stunning WinForms apps today!
Reboot your WinForms applications with
formed
> in pymol). I'll be thankful for any suggestions.
>
> Best wishes,
>
> James
--
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PyMOL Developer
Schrödinger, Inc.
--
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align align_1, align_2
> RMSD is X.XX
>
> Does this functionality exist?
>
> Jordan
--
Thomas Holder
PyMOL
Schrödinger, Inc.
--
Want fast and easy access to all the code in your enterprise? I
versity of California San Francisco
> Integrative Program in Quantitative Biology
> justin.b...@ucsf.edu
--
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PyMOL
Schrödinger, Inc.
--
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Hi Matt,
I pushed a fix to SVN rev 4084.
Cheers,
Thomas
On 23 Jul 2014, at 14:06, Thomas Holder wrote:
> Hi Matt,
>
> thank you for the bug report. We will fix this as soon as possible.
>
> Cheers,
> Thomas
>
> On 23 Jul 2014, at 13:06, Matthew Baumgartner
ror when I revert to revision 4082.
> The diff indicates that the error is in the ObjectMoleculeSetDiscrete
> function in layer2/ObjectMolecule.c
>
> Thanks,
> Matt Baumgartner
--
Thomas Holder
PyMOL Developer
Schrödinger, Inc.
h is
>>>> something that changed in comparison to other PyMOL versions (cf. the
>>>> link).
>>>> Just beware: removing a installed plugin may physically delete the file.
>>>> So be sure to backup your script should you decide to remove scripts or
&
t is supposed to happen. Guess I am a
> bit confused as to how this command works; I did not find anything about it
> on the pymol wiki or my notes. Thanks in advance.
--
Thomas Holder
PyMOL Developer
Schrödinger, Inc.
ath' property such that downloaded PDB
> files would be saved in
>
> os.path.abspath(os.path.join(os.path.curdir, "pdbfiles"))
>
> where 'curdir' is $HOME and 'pdbfiles' is within $HOME.
>
> However, I get 'fetch-error'.
&
cule has atoms with duplicate names within the same residue, so the
> info string chain_name/residue_name/atom_name does not uniquely identify an
> atom. I need to see the atom index or atom serial.
>
> Thanks in advance for
ould be a C-alpha based solely on atom names.
>
> Are my settings OK ?
> Did I do something wrong ?
> Should I change them to get an output respecting pdb standards ?
>
> Thanks a lot for helping,
>
> Pascal
>
> -
> Pascal Auffinger
> IBMC/CNRS
> 15 rue
; in the entire molecule when only one section of it is morphing.
>
> Thank you
>
> A
--
Thomas Holder
PyMOL Developer
Schrödinger, Inc.
--
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s:
>
> 1. Can you use grid mode in batch mode scripts to output an image?
> 2. Can you encode a full screen GUI in the pymol session so when you open up
> the session, it is full screen?
>
> Using MacPyMOL latest release, ca
glycine and an neighbouring
> residue I didn't get the carbonyl oxygen atom of glycine and I don't
> want to switch of the side chain helper function for all residues.
> Is there a way to get that done without switching the helper function
> completely off?
>
> Th
y, or am I missing something?
> Cheers,
> Gian
>
> On 2/3/14 3:01 AM, Thomas Holder wrote:
>> Hi Esben,
>>
>> On 02 Feb 2014, at 12:27, Esben Jannik Bjerrum
>> wrote:
>>> ... I also found a nifty example from brick01.py in the examples directory,
&g
arse
> File "/Volumes/Home/Users/.../pymol/poseview.py", line 49, in poseview
> viewport = cmd.get_viewport()
> AttributeError: 'module' object has no attribute 'get_viewport
>
> I would appreciate if someone helps me understand this.
>
the external gui as
> well as being shown in the viewer. I will be doing lots of these at the same
> time and the screen will get crowded. Thank you in advance.
--
Thomas Holder
PyMOL Developer
Schrödinger, Inc.
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