Messages by Date
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2017/06/13
Re: [R-sig-phylo] need finite 'xlim' values error with plot.phylo
Emmanuel Paradis
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2017/06/13
Re: [R-sig-phylo] need finite 'xlim' values error with plot.phylo
Santiago Sánchez
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2017/06/13
Re: [R-sig-phylo] need finite 'xlim' values error with plot.phylo
Liam Revell
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2017/06/13
[R-sig-phylo] need finite 'xlim' values error with plot.phylo
Santiago Sánchez
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2017/06/11
[R-sig-phylo] Searching only ultrametric trees
William Gelnaw
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2017/06/10
Re: [R-sig-phylo] A possible alternate MRCA function to APE's getMRCA
Klaus Schliep
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2017/06/10
Re: [R-sig-phylo] A possible alternate MRCA function to APE's getMRCA
Emmanuel Paradis
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2017/06/10
Re: [R-sig-phylo] A possible alternate MRCA function to APE's getMRCA
Joseph W. Brown
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2017/06/10
Re: [R-sig-phylo] A possible alternate MRCA function to APE's getMRCA
Emmanuel Paradis
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2017/06/09
Re: [R-sig-phylo] A possible alternate MRCA function to APE\'s getMRCA
Joseph W. Brown
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2017/06/09
Re: [R-sig-phylo] A possible alternate MRCA function to APE\'s getMRCA
Klaus Schliep
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2017/06/09
Re: [R-sig-phylo] A possible alternate MRCA function to APE\'s getMRCA
Joseph W. Brown
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2017/06/09
Re: [R-sig-phylo] A possible alternate MRCA function to APE\'s getMRCA
Liam J. Revell
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2017/06/09
Re: [R-sig-phylo] A possible alternate MRCA function to APE\'s getMRCA
Liam J. Revell
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2017/06/08
[R-sig-phylo] A possible alternate MRCA function to APE\'s getMRCA
Juan Antonio Balbuena
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2017/06/07
Re: [R-sig-phylo] A possible alternate MRCA function to APE's getMRCA
Joseph W. Brown
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2017/06/07
Re: [R-sig-phylo] A possible alternate MRCA function to APE's getMRCA
Klaus Schliep
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2017/06/07
[R-sig-phylo] A possible alternate MRCA function to APE's getMRCA
Joseph W. Brown
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2017/06/06
[R-sig-phylo] Function to drop clade
Mario José Marques-Azevedo
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2017/06/06
[R-sig-phylo] Course on genetic data analysuis using R
Oliver Hooker
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2017/06/01
Re: [R-sig-phylo] ape prop.part error malloc(): memory corruption
Mario José Marques-Azevedo
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2017/06/01
Re: [R-sig-phylo] ape prop.part error malloc(): memory corruption
Mario José Marques-Azevedo
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2017/06/01
Re: [R-sig-phylo] ape prop.part error malloc(): memory corruption
Mario José Marques-Azevedo
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2017/06/01
Re: [R-sig-phylo] ape prop.part error malloc(): memory corruption
Eliot Miller
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2017/05/31
[R-sig-phylo] ape prop.part error malloc(): memory corruption
Mario José Marques-Azevedo
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2017/05/29
[R-sig-phylo] PhD position in comparative and meta-analysis
Shinichi Nakagawa
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2017/05/26
Re: [R-sig-phylo] ape package: improvement suggestion in color handling for mosaic in phydataplot?
Emmanuel Paradis
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2017/05/26
Re: [R-sig-phylo] possible bug in the phydataplot in ape package?
Emmanuel Paradis
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2017/05/24
Re: [R-sig-phylo] modeling discretely plastic traits
David Bapst
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2017/05/24
Re: [R-sig-phylo] Rooting trees in R
Valentine Usongo
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2017/05/24
Re: [R-sig-phylo] Rooting trees in R
Juan Antonio Balbuena
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2017/05/23
[R-sig-phylo] ape package: improvement suggestion in color handling for mosaic in phydataplot?
Elizabeth Purdom
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2017/05/23
[R-sig-phylo] possible bug in the phydataplot in ape package?
Elizabeth Purdom
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2017/05/23
Re: [R-sig-phylo] Rooting trees in R
Valentine Usongo
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2017/05/23
Re: [R-sig-phylo] Rooting trees in R
Jacob Berv
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2017/05/23
[R-sig-phylo] Rooting trees in R
Valentine Usongo
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2017/05/23
[R-sig-phylo] modeling discretely plastic traits
Jacob Berv
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2017/05/22
[R-sig-phylo] PhD position in evolutionary biology
krzysztofbartoszek
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2017/05/18
Re: [R-sig-phylo] ace() Warning message:, In sqrt(1/out$hessian) : NaNs produced
Juan Antonio Balbuena
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2017/05/18
Re: [R-sig-phylo] ace() Warning message:, In sqrt(1/out$hessian) : NaNs produced
Emmanuel Paradis
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2017/05/17
Re: [R-sig-phylo] dating cladograms in R
Fábio Machado
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2017/05/17
Re: [R-sig-phylo] dating cladograms in R
Nürk , Nicolai
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2017/05/17
Re: [R-sig-phylo] dating cladograms in R
Joseph W. Brown
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2017/05/17
[R-sig-phylo] dating cladograms in R
Fábio Machado
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2017/05/12
[R-sig-phylo] (no subject)
Nicolas Brualla
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2017/05/11
[R-sig-phylo] ace() Warning message:, In sqrt(1/out$hessian) : NaNs produced
Juan Antonio Balbuena
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2017/05/11
Re: [R-sig-phylo] Error in PGLS
f.k...@mailbox.org
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2017/05/11
[R-sig-phylo] Error in PGLS
Nicolas Brualla
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2017/05/09
[R-sig-phylo] Medusa error
Jacob B Landis
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2017/05/08
Re: [R-sig-phylo] Extracting a clade for LTT
Liam J. Revell
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2017/05/08
Re: [R-sig-phylo] Extracting a clade for LTT
Joseph W. Brown
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2017/05/08
[R-sig-phylo] Extracting a clade for LTT
David Buckley
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2017/05/08
Re: [R-sig-phylo] REST API CIPRES
François Michonneau
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2017/05/08
[R-sig-phylo] REST API CIPRES
Andreas Kolter
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2017/04/30
[R-sig-phylo] problem calculating independent contrasts
Patrick Pereira
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2017/04/28
[R-sig-phylo] mixed models in phyreg
Ivalu Cacho
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2017/04/28
Re: [R-sig-phylo] Bug in ape?
François Michonneau
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2017/04/27
Re: [R-sig-phylo] Graphically comparing multiple trees
Klaus Schliep
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2017/04/27
Re: [R-sig-phylo] Applying standard error in phylogenetic signal measurement using lambda
Liam J. Revell
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2017/04/27
[R-sig-phylo] Applying standard error in phylogenetic signal measurement using lambda
Chen, Ting-Wen
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2017/04/27
Re: [R-sig-phylo] Graphically comparing multiple trees
Vojtěch Zeisek
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2017/04/26
Re: [R-sig-phylo] Bug in ape?
Simon Blomberg
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2017/04/26
[R-sig-phylo] Bug in ape?
Simon Blomberg
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2017/04/26
Re: [R-sig-phylo] Graphically comparing multiple trees
Liam J. Revell
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2017/04/26
Re: [R-sig-phylo] Graphically comparing multiple trees
Vojtěch Zeisek
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2017/04/26
Re: [R-sig-phylo] Graphically comparing multiple trees
Vojtěch Zeisek
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2017/04/26
Re: [R-sig-phylo] Graphically comparing multiple trees
Vojtěch Zeisek
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2017/04/26
Re: [R-sig-phylo] Graphically comparing multiple trees
Vojtěch Zeisek
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2017/04/26
Re: [R-sig-phylo] Graphically comparing multiple trees
Liam J. Revell
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2017/04/26
Re: [R-sig-phylo] Graphically comparing multiple trees
Vojtěch Zeisek
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2017/04/25
Re: [R-sig-phylo] Graphically comparing multiple trees
Klaus Schliep
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2017/04/25
Re: [R-sig-phylo] Graphically comparing multiple trees
Liam J. Revell
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2017/04/25
Re: [R-sig-phylo] Graphically comparing multiple trees
Thibaut Jombart
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2017/04/25
Re: [R-sig-phylo] Graphically comparing multiple trees
Jacob Berv
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2017/04/25
[R-sig-phylo] Graphically comparing multiple trees
Vojtěch Zeisek
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2017/04/18
Re: [R-sig-phylo] phylip file compression ratios
Jacob Berv
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2017/04/18
Re: [R-sig-phylo] phylip file compression ratios
Joe Felsenstein
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2017/04/18
[R-sig-phylo] phylip file compression ratios
Jacob Berv
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2017/04/07
Re: [R-sig-phylo] Average Aminoacid Identity tree with bootstrap support. Is it possible?
Joe Felsenstein
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2017/04/07
Re: [R-sig-phylo] Average Aminoacid Identity tree with bootstrap support. Is it possible?
Emmanuel Paradis
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2017/04/06
[R-sig-phylo] Average Aminoacid Identity tree with bootstrap support. Is it possible?
Salvador Espada Hinojosa
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2017/04/03
[R-sig-phylo] computing phylogenetic residuals
Jacob Berv
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2017/03/31
[R-sig-phylo] Postdoc position: parental care evoluton
Isabella Capellini
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2017/03/16
Re: [R-sig-phylo] Zero inflated model accounting for
Matthews, Luke
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2017/03/16
Re: [R-sig-phylo] How to test stratification of sampling across tree?
Ross Mounce
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2017/03/15
Re: [R-sig-phylo] How to test stratification of sampling across tree?
Brian O'Meara
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2017/03/15
Re: [R-sig-phylo] Zero inflated model accounting for phylogeny
Manabu Sakamoto
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2017/03/15
[R-sig-phylo] Zero inflated model accounting for phylogeny
Gopal Murali
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2017/03/14
Re: [R-sig-phylo] How to test stratification of sampling across tree?
Ross Mounce
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2017/03/14
Re: [R-sig-phylo] How to test stratification of sampling across tree?
Ross Mounce
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2017/03/14
Re: [R-sig-phylo] How to test stratification of sampling across tree?
David Bapst
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2017/03/14
[R-sig-phylo] How to test stratification of sampling across tree?
Ross Mounce
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2017/03/11
[R-sig-phylo] Workshop: DiversificationRates & Macroevolution
Dan Rabosky
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2017/03/01
Re: [R-sig-phylo] distances between the nodes
Klaus Schliep
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2017/03/01
Re: [R-sig-phylo] distances between the nodes
Wierzbinska, Justyna
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2017/02/28
[R-sig-phylo] UK.GeometricMorphometricsUsingRDeanAdams.Jun5-9
Oliver Hooker
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2017/02/28
Re: [R-sig-phylo] Plotting uncertainty in continuous ASR
Liam J. Revell
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2017/02/28
Re: [R-sig-phylo] Plotting uncertainty in continuous ASR
Arbuckle, Kevin
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2017/02/27
Re: [R-sig-phylo] converting TNT(?) tree to newick tree
Chris Law
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2017/02/27
Re: [R-sig-phylo] converting TNT(?) tree to newick tree
Eduardo Ascarrunz
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2017/02/27
Re: [R-sig-phylo] Plotting uncertainty in continuous ASR
Liam J. Revell
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2017/02/27
Re: [R-sig-phylo] Plotting uncertainty in continuous ASR
Liam J. Revell
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2017/02/27
Re: [R-sig-phylo] Plotting uncertainty in continuous ASR
David Bapst
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2017/02/27
Re: [R-sig-phylo] Plotting uncertainty in continuous ASR
Liam J. Revell
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2017/02/27
[R-sig-phylo] FW: Plotting uncertainty in continuous ASR
Arbuckle, Kevin
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2017/02/27
Re: [R-sig-phylo] Plotting uncertainty in continuous ASR
Jacob Berv
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2017/02/27
[R-sig-phylo] Plotting uncertainty in continuous ASR
Arbuckle, Kevin
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2017/02/25
Re: [R-sig-phylo] phytools densityMap tree paint back to binary state
marko . djurakic
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2017/02/24
Re: [R-sig-phylo] phytools densityMap tree paint back to binary state
Liam J. Revell
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2017/02/24
[R-sig-phylo] phytools densityMap tree paint back to binary state
marko . djurakic
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2017/02/24
Re: [R-sig-phylo] distances between the nodes
Klaus Schliep
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2017/02/24
Re: [R-sig-phylo] distances between the nodes
Eduardo Ascarrunz
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2017/02/24
[R-sig-phylo] UK.CodingDataManageShinyappsRStudioForEvolutionaryBiologists.May15-19
Oliver Hooker
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2017/02/24
[R-sig-phylo] distances between the nodes
Wierzbinska, Justyna
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2017/02/23
[R-sig-phylo] Substitution model for codon alignment
Bhuller, Ravneet
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2017/02/23
[R-sig-phylo] Negative transition rates in diversitree
Miguel.Verdu
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2017/02/23
[R-sig-phylo] simulate additive trees based on ultrametric trees
Juan Antonio Balbuena
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2017/02/16
Re: [R-sig-phylo] MrBayes Branch Lengths in R
William Gearty
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2017/02/16
[R-sig-phylo] MrBayes Branch Lengths in R
William Gearty
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2017/02/15
[R-sig-phylo] Phylogeny, continuous trait and categorical trait mix
Alba Frias de diego
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2017/02/15
[R-sig-phylo] STATS COURSE.UK.AdvancingInRforEvolutionaryBiologists.24-28April2017
Oliver Hooker
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2017/02/08
[R-sig-phylo] Ann: course Mapping Trait Evolution, June 5-9, Barcelona (Spain)
Soledad De Esteban-Trivigno
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2017/02/08
[R-sig-phylo] REML version of Lynch1991?
f.k...@mailbox.org
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2017/02/07
Re: [R-sig-phylo] HKY GTR distances
Klaus Schliep
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2017/02/07
[R-sig-phylo] pairwise random effects model
Jeff Shi
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2017/02/07
Re: [R-sig-phylo] Rooting a tree with a basal polytomy
Yan Wong
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2017/02/07
Re: [R-sig-phylo] Rooting a tree with a basal polytomy
Emmanuel Paradis
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2017/02/07
[R-sig-phylo] Rooting a tree with a basal polytomy
Yan Wong
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2017/02/06
[R-sig-phylo] PCM Workshop in Córdoba, Argentina, 1-4 August
Liam J. Revell
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2017/02/05
Re: [R-sig-phylo] Painting clades in a fan tree with bars
Liam J. Revell
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2017/02/05
[R-sig-phylo] Painting clades in a fan tree with bars
Oscar Valverde
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2017/02/03
Re: [R-sig-phylo] HKY GTR distances
Joe Felsenstein
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2017/02/03
Re: [R-sig-phylo] HKY GTR distances
Emmanuel Paradis
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2017/02/02
Re: [R-sig-phylo] mean phylogenetic distance for subsets of species from a tree
Zach Culumber
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2017/02/02
Re: [R-sig-phylo] mean phylogenetic distance for subsets of species from a tree
Liam J. Revell
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2017/02/02
[R-sig-phylo] mean phylogenetic distance for subsets of species from a tree
Zach Culumber
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2017/02/02
Re: [R-sig-phylo] HKY GTR distances
Jacob Berv
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2017/02/02
[R-sig-phylo] HKY GTR distances
kolte...@rub.de
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2017/02/02
[R-sig-phylo] detect psbA-trnH inversions (and what to do with them) before phylogenetic reconstruction
kolte...@rub.de
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2017/01/31
[R-sig-phylo] Fwd: Workshop: UWashington.EvolQuantGenetics.Jun5-9
Joe Felsenstein
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2017/01/29
Re: [R-sig-phylo] How to incorporate duplicate species data
Christopher Hamilton
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2017/01/27
Re: [R-sig-phylo] How to incorporate duplicate species data
Philip Shirk
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2017/01/27
Re: [R-sig-phylo] How to incorporate duplicate species data
Liam J. Revell
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2017/01/27
[R-sig-phylo] How to incorporate duplicate species data
Philip Shirk
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2017/01/26
Re: [R-sig-phylo] to log or not to log
Jacob Berv
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2017/01/26
Re: [R-sig-phylo] to log or not to log
Donald Miles
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2017/01/26
Re: [R-sig-phylo] to log or not to log
Theodore Garland
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2017/01/26
[R-sig-phylo] to log or not to log
Jacob Berv
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2017/01/25
Re: [R-sig-phylo] ape - corMartins
Sergio Ferreira Cardoso
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2017/01/24
Re: [R-sig-phylo] ape - corMartins
Emmanuel Paradis
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2017/01/24
Re: [R-sig-phylo] Enigmatic error with drop.tip
Juan Antonio Balbuena
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2017/01/23
Re: [R-sig-phylo] Enigmatic error with drop.tip
Emmanuel Paradis
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2017/01/20
Re: [R-sig-phylo] Enigmatic error with drop.tip
Klaus Schliep
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2017/01/20
[R-sig-phylo] ape - corMartins
Sergio Ferreira Cardoso
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2017/01/20
[R-sig-phylo] Enigmatic error with drop.tip
Juan Antonio Balbuena
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2017/01/17
Re: [R-sig-phylo] chronoMPL/APE
Brian O'Meara
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2017/01/17
[R-sig-phylo] Introduction to R and statistics for biologists - CHINA - April2017
Oliver Hooker
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2017/01/17
[R-sig-phylo] chronoMPL/APE
Juan Antonio Balbuena
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2017/01/17
[R-sig-phylo] chronoMPL/APE
Jacqueline Heckenhauer
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2017/01/16
Re: [R-sig-phylo] multi2di fails on multiPhylo objects
Emmanuel Paradis
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2017/01/14
Re: [R-sig-phylo] Amniote Phylogenetic Tree
Sergio Ferreira Cardoso
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2017/01/13
Re: [R-sig-phylo] Plotting character data next to tree in R
Liam J. Revell
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2017/01/13
Re: [R-sig-phylo] multi2di fails on multiPhylo objects
Yan Wong
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2017/01/13
Re: [R-sig-phylo] multi2di fails on multiPhylo objects
Yan Wong
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2017/01/13
Re: [R-sig-phylo] multi2di fails on multiPhylo objects
Klaus Schliep
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2017/01/13
Re: [R-sig-phylo] multi2di fails on multiPhylo objects
Yan Wong
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2017/01/13
Re: [R-sig-phylo] Amniote Phylogenetic Tree
François Michonneau
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2017/01/13
[R-sig-phylo] Amniote Phylogenetic Tree
Sergio Ferreira Cardoso
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2017/01/13
[R-sig-phylo] Plotting character data next to tree in R
Katharine Walter
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2017/01/13
[R-sig-phylo] Introduction to R and statistics for biologists - CHINA - April2017
Oliver Hooker
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2017/01/13
[R-sig-phylo] multi2di fails on multiPhylo objects
Yan Wong
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2017/01/06
Re: [R-sig-phylo] phylo from igraph
Giulio V. Dalla Riva
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2017/01/06
Re: [R-sig-phylo] phylo from igraph
Klaus Schliep
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2017/01/06
[R-sig-phylo] phylo from igraph
Giulio V. Dalla Riva
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2017/01/06
Re: [R-sig-phylo] Extract all possible clades from a tree
Kamila Naxerova
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2017/01/06
Re: [R-sig-phylo] Extract all possible clades from a tree
Emmanuel Paradis
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2017/01/06
Re: [R-sig-phylo] Extract all possible clades from a tree
Emmanuel Paradis
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2017/01/05
Re: [R-sig-phylo] Extract all possible clades from a tree
Klaus Schliep
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2017/01/05
Re: [R-sig-phylo] Extract all possible clades from a tree
Joseph W. Brown
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2017/01/05
Re: [R-sig-phylo] Extract all possible clades from a tree
Kamila Naxerova
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2017/01/05
Re: [R-sig-phylo] Extract all possible clades from a tree
Joseph W. Brown
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2017/01/05
[R-sig-phylo] Extract all possible clades from a tree
Kamila Naxerova
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2017/01/04
Re: [R-sig-phylo] Tree plotting (and maybe others) are borked when a node label is '0'
Yan Wong
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2017/01/04
Re: [R-sig-phylo] Tree plotting (and maybe others) are borked when a node label is '0'
Emmanuel Paradis
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2017/01/04
Re: [R-sig-phylo] read.FASTA accept connection
Emmanuel Paradis
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2017/01/04
[R-sig-phylo] Tree plotting (and maybe others) are borked when a node label is '0'
Yan Wong
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2017/01/03
Re: [R-sig-phylo] read.FASTA accept connection
Rj Ewing
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2017/01/03
Re: [R-sig-phylo] read.FASTA accept connection
Emmanuel Paradis
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2017/01/02
[R-sig-phylo] read.FASTA accept connection
Rj Ewing
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2016/12/28
Re: [R-sig-phylo] Force read.nexus() to return a multiPhylo object, even if there is only one tree
Liam J. Revell
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2016/12/28
Re: [R-sig-phylo] Force read.nexus() to return a multiPhylo object, even if there is only one tree
Emmanuel Paradis
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2016/12/27
Re: [R-sig-phylo] Force read.nexus() to return a multiPhylo object, even if there is only one tree
Liam J. Revell
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2016/12/27
Re: [R-sig-phylo] Force read.nexus() to return a multiPhylo object, even if there is only one tree
Yan Wong
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2016/12/27
Re: [R-sig-phylo] Force read.nexus() to return a multiPhylo object, even if there is only one tree
Emmanuel Paradis
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2016/12/27
[R-sig-phylo] Force read.nexus() to return a multiPhylo object, even if there is only one tree
Yan Wong
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2016/12/21
Re: [R-sig-phylo] ape chronos error
Emmanuel Paradis
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2016/12/19
Re: [R-sig-phylo] simulating gene trees on a given species tree and theta
dga...@huskers.unl.edu
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2016/12/18
Re: [R-sig-phylo] simulating gene trees on a given species tree and theta
Anuj Guruvacharya
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2016/12/18
Re: [R-sig-phylo] simulating gene trees on a given species tree and theta
Cecile Ane
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2016/12/18
Re: [R-sig-phylo] simulating gene trees on a given species tree and theta
Liam J. Revell