Re: [ccp4bb] very informative - Trends in Data Fabrication

2012-04-09 Thread Phil Evans
On 8 Apr 2012, at 21:18, aaleshin wrote: What I suggested with respect to the PDB data validation was adding some additional information that would allow to independently validate such parameters as the resolution and data quality (catching of model fabrications would be a byproduct of

Re: [ccp4bb] very informative - Trends in Data Fabrication

2012-04-09 Thread aaleshin
Thank you Phil, for clarification of my point, but it appears as cheating in a current situation, when an author has to fit a three dimensional statistics into a one-dimentional table. Moreover, many of journal reviewers may never worked with the low-resolution data and understand importance of

Re: [ccp4bb] very informative - Trends in Data Fabrication

2012-04-09 Thread Boaz Shaanan
6:47 PM To: CCP4BB@JISCMAIL.AC.UK Subject: Re: [ccp4bb] very informative - Trends in Data Fabrication Thank you Phil, for clarification of my point, but it appears as cheating in a current situation, when an author has to fit a three dimensional statistics into a one-dimentional table. Moreover

Re: [ccp4bb] very informative - Trends in Data Fabrication

2012-04-09 Thread Phil Evans
of aaleshin [aales...@burnham.org] Sent: Monday, April 09, 2012 6:47 PM To: CCP4BB@JISCMAIL.AC.UK Subject: Re: [ccp4bb] very informative - Trends in Data Fabrication Thank you Phil, for clarification of my point, but it appears as cheating in a current situation, when an author has to fit a three

Re: [ccp4bb] very informative - Trends in Data Fabrication

2012-04-09 Thread David Schuller
On 04/09/12 12:32, Boaz Shaanan wrote: How about such a footnote to Table 1: The resolution of data is 3A in the a direction, 3.5A in b direction and 5A in the c direction Wouldn't this do the trick? Usually there's a requirement for a table of statistics, including completeness and R in

Re: [ccp4bb] very informative - Trends in Data Fabrication

2012-04-09 Thread aaleshin
It is a wonderful server indeed, but its default setting cuts the resolution at 3 sigma (if I remember correctly). It is too stringent in my opinion. Also, it is not clear to me whether to submit all data to the highest resolution point, or the data that come from the server? But then again,

Re: [ccp4bb] very informative - Trends in Data Fabrication

2012-04-09 Thread Richard Gillilan
On Apr 9, 2012, at 11:47 AM, aaleshin wrote: Thank you Phil, for clarification of my point, but it appears as cheating in a current situation, when an author has to fit a three dimensional statistics into a one-dimentional table. Moreover, many of journal reviewers may never worked with

Re: [ccp4bb] very informative - Trends in Data Fabrication

2012-04-09 Thread Pavel Afonine
Hi Alex, It is not clear to me how to report the resolution of data when it is 3A in one direction, 3.5A in another and 5A in the third. can't be easier I guess: just switch from characterizing data sets with one single number (which is suboptimal, at least, as Phil pointed out earlier) and

Re: [ccp4bb] very informative - Trends in Data Fabrication

2012-04-09 Thread aaleshin
Hi Pavel, Reporting the table that you suggested would create more red flags for the reviewers and readers than explaining how to understand the resolution of my data. We need more studies into this issue (correlation between the resolution of anisotropic data and model quality). And there

Re: [ccp4bb] very informative - Trends in Data Fabrication

2012-04-09 Thread Pavel Afonine
Alex, I think you are mixing two things here: presenting statistics that characterizes the data and its interpretation. Looking at data completeness as a single number tells something but not a lot, while looking at these metrics per resolution reveals a whole lot more information (for example,

Re: [ccp4bb] very informative - Trends in Data Fabrication

2012-04-09 Thread Felix Frolow
Or as tensor, see classic: ANISOTROPIC SCALING OF 3-DIMENSIONAL INTENSITY DATA Author(s): SHAKKED, Z (SHAKKED, Z) Source: ACTA CRYSTALLOGRAPHICA SECTION A Volume: 39 Issue: MAY Pages: 278-279 DOI: 10.1107/S0108767383000665 Published: 1983 I guess this or similar is implemented in

Re: [ccp4bb] very informative - Trends in Data Fabrication

2012-04-08 Thread James Holton
On 4/2/2012 6:03 AM, herman.schreu...@sanofi.com wrote: If James Holton had been involved, the fabrication would not have been discovered. Herman Uhh. Thanks. I think? Apologies for remaining uncharacteristically quiet. I have been keeping up with the discussion, but not sure how much

Re: [ccp4bb] very informative - Trends in Data Fabrication

2012-04-08 Thread aaleshin
Since I was the person who started a public outcry to do something, I shell explain myself to my critics. Similarly to all of you, I do not care much about those few instances of structure fabrication. I might put too much emphases on them to initiate the discussion, but they are, indeed, only

Re: [ccp4bb] very informative - Trends in Data Fabrication

2012-04-08 Thread Bernhard Rupp (Hofkristallrat a.D.)
You never know when a forgotten slip of the mouse when using AutoDep ten years ago will come back to haunt you. On the paper James refers to and found the data, added mystery was that the postdoc who may have slipped disappeared w/o much of trace and the PI died. Dan was the only survivor. Still

Re: [ccp4bb] very informative - Trends in Data Fabrication

2012-04-07 Thread Jrh
Dear Ron, Quite so, and who cannot laugh at the Yes Minister perfect hospital ward operating theatre sketch ( Thankyou James W). Anyway:- Let's not get too hung up on one detail of your point 3. Your various points, including point 3, added several missing elements in this CCp4bb thread.

Re: [ccp4bb] very informative - Trends in Data Fabrication

2012-04-07 Thread Eric Bennett
I doubt many people completely fail to archive data but maintaining data archives can be a pain so I'm not sure what the useful age of the average archive is. Do people who archived to tape keep their tapes in a format that can be read by modern tape drives? Do people who archived data to a

Re: [ccp4bb] very informative - Trends in Data Fabrication

2012-04-06 Thread Ronald E Stenkamp
Dear John, Your points are well taken and they're consistent with policies and practices in the US as well. I wonder about the nature of the employer's responsibility though. I sit on some university committees, and the impression I get is that much of the time, the employers are

Re: [ccp4bb] very informative - Trends in Data Fabrication

2012-04-06 Thread Patrick Loll
Ron makes an excellent point. Many institutions devote far more energy to limiting risk than to doing the right thing. This leads administrators to a frightening, but logical conclusion: The less science we do, the less chance of our doing something that could invite a penalty on the

Re: [ccp4bb] very informative - Trends in Data Fabrication

2012-04-06 Thread James Whisstock
As famously observed by the Yes Minister teamthe dream outcome for any organization: http://www.youtube.com/watch?v=x-5zEb1oS9Afeature=youtube_gdata_player J Sent from my iPhone On 07/04/2012, at 3:16 AM, Patrick Loll pat.l...@drexel.edu wrote: Ron makes an excellent point. Many

Re: [ccp4bb] very informative - Trends in Data Fabrication

2012-04-05 Thread John R Helliwell
Dear 'aales...@burnham.org', Re the pixel detector; yes this is an acknowledged raw data archiving challenge; possible technical solutions include:- summing to make coarser images ie in angular range, lossless compression (nicely described on this CCP4bb by James Holton) or preserving a

Re: [ccp4bb] very informative - Trends in Data Fabrication

2012-04-05 Thread Herbert J. Bernstein
Dear Colleagues, Clearly, no system will be able to perfectly preserve every pixel of every dataset collected at a cost that can be afforded. Resources are finite and we must set priorities. I would suggest that, in order of declining priority, we try our best to retain: 1. raw data that

Re: [ccp4bb] very informative - Trends in Data Fabrication

2012-04-05 Thread Roger Rowlett
FYI, every NSF grant proposal now must have a data management plan that describes how all experimental data will be archived and in what formats. I'm not sure how seriously these plans are monitored, but a plan must be provided nevertheless. Is anyone NOT archiving their original data in some way?

Re: [ccp4bb] very informative - Trends in Data Fabrication

2012-04-05 Thread Bosch, Juergen
I would say everybody keeps probably too many junk datasets around - at least I do. And I run into the trouble of having to buy new TB plates every now and then. I think on average per year my group acquires currently ~700 GB of raw images (compressed), now if we were to only keep the useful

[ccp4bb] Category 4 Re: [ccp4bb] very informative - Trends in Data Fabrication

2012-04-05 Thread Jrh
Dear Herbert, Category 4, in Manchester, we find is tricky, for want of a better word. Needless to say that we have collaborators on our Crystallography Research Service who request data sets from eg ten years ago, that are now urgent for publication writing up. So we are keeping everything,

[ccp4bb] Via Annual Reports...Re: [ccp4bb] very informative - Trends in Data Fabrication

2012-04-05 Thread Jrh
Dear Roger, At the recent ICSTI Workshop on Delivering Data in science the NSF presenter, when I asked about monitoring, replied that the PIs' annual reports should include data management aspects. See http://www.icsti.org/spip.php?rubrique42 Best wishes, John Prof John R Helliwell DSc FInstP

Re: [ccp4bb] very informative - Trends in Data Fabrication

2012-04-05 Thread aaleshin
Dear John, Thank you for a very informative letter about the IUCr activities towards archiving the experimental data. I feel that I did not explain myself properly. I do not object archiving the raw data, I just believe that current methodology of validating data at PDB is insufficiently robust

Re: [ccp4bb] very informative - Trends in Data Fabrication

2012-04-05 Thread Ronald E Stenkamp
This discussion has been interesting, and it's provided an interesting forum for those interested in dealing with fraud in science. I've not contributed anything to this thread, but the message from Alexander Aleshin prodded me to say some things that I haven't heard expressed before. 1. The

Re: [ccp4bb] very informative - Trends in Data Fabrication

2012-04-05 Thread Bernhard Rupp (Hofkristallrat a.D.)
@JISCMAIL.AC.UK] On Behalf Of Ronald E Stenkamp Sent: Thursday, April 05, 2012 1:04 PM To: CCP4BB@JISCMAIL.AC.UK Subject: Re: [ccp4bb] very informative - Trends in Data Fabrication This discussion has been interesting, and it's provided an interesting forum for those interested in dealing with fraud

Re: [ccp4bb] very informative - Trends in Data Fabrication

2012-04-05 Thread aaleshin
data. Best, BR -Original Message- From: CCP4 bulletin board [mailto:CCP4BB@JISCMAIL.AC.UK] On Behalf Of Ronald E Stenkamp Sent: Thursday, April 05, 2012 1:04 PM To: CCP4BB@JISCMAIL.AC.UK Subject: Re: [ccp4bb] very informative - Trends in Data Fabrication This discussion has been

Re: [ccp4bb] very informative - Trends in Data Fabrication

2012-04-05 Thread Bernhard Rupp (Hofkristallrat a.D.)
Ojweh c) Discarding your primary data is generally considered bad form... Agreed, but it is a big burden on labs to maintain archives of their raw data indefinitely. Even IRS allows to discard them after some time. But you DO have to file in the first place, right? How long to keep is an

Re: [ccp4bb] very informative - Trends in Data Fabrication

2012-04-05 Thread aaleshin
Alright, if the image deposition is the only way out, then I am for it, but please make sure that synchrotrons will do it for me... On Apr 5, 2012, at 7:58 PM, Bernhard Rupp (Hofkristallrat a.D.) wrote: Ojweh c) Discarding your primary data is generally considered bad form... Agreed,

Re: [ccp4bb] very informative - Trends in Data Fabrication

2012-04-05 Thread Bosch, Juergen
How should they ? They have no clue which of the 20 datasets was actually useful to solve your structure. If you ask James Holton he has (suggested) to go back to the archived data after a certain time and try to solve the undeposited structures then :-) [Where is James anyhow ? Haven't seen a

Re: [ccp4bb] very informative - Trends in Data Fabrication

2012-04-05 Thread aaleshin
Did you play as a child a game called a broken phone? It is when someone tells something quickly to a neighbor, and so on until the words come back to the author. Very funny game. My original thesis was that downloading/depositing the raw images would be a pain in the neck for

Re: [ccp4bb] very informative - Trends in Data Fabrication

2012-04-04 Thread Frank von Delft
No James, you're not alone - astonishing petty pile-on (bullying?) on this board the last few days. Wikipedia says: In Internet slang http://en.wikipedia.org/wiki/Internet_slang, a *troll* is someone who posts inflammatory,^[2]

Re: [ccp4bb] very informative - Trends in Data Fabrication

2012-04-04 Thread Eric Bennett
Then everyone's data can be lost at once in the next cloud failure. Progress! The hardware failed in such a way that we could not forensically restore the data. What we were able to recover has been made available via a snapshot, although the data is in such a state that it may have little

Re: [ccp4bb] very informative - Trends in Data Fabrication

2012-04-04 Thread aaleshin
People who raise their voices for a prolonged storage of raw images miss a simple fact that the volume of collected data increases proportionally if not faster than the cost of storage space drops. I just had an opportunity to collect data with the PILATUS detector at SSRL and say you that

Re: [ccp4bb] very informative - Trends in Data Fabrication

2012-04-04 Thread Zhijie Li
@JISCMAIL.AC.UK Subject: Re: [ccp4bb] very informative - Trends in Data Fabrication Then everyone's data can be lost at once in the next cloud failure. Progress! The hardware failed in such a way that we could not forensically restore the data. What we were able to recover has been made

Re: [ccp4bb] very informative - Trends in Data Fabrication

2012-04-03 Thread Mark J van Raaij
In fact, I would put it even stronger, if we know a referee is being dishonest, it is our duty to make sure he is removed from science, blacklisted from the journal etc. Mark J van Raaij Laboratorio M-4 Dpto de Estructura de Macromoleculas Centro Nacional de Biotecnologia - CSIC c/Darwin 3

Re: [ccp4bb] very informative - Trends in Data Fabrication

2012-04-03 Thread Herbert J. Bernstein
Dear Colleagues, One thing that would help is avoiding misappropriated priority of research results would be to join the math and physics community in their robust use of open-access preprints in arXiv. Such public preprints establish reliable timelines for research credit and help to

Re: [ccp4bb] very informative - Trends in Data Fabrication

2012-04-03 Thread Tom Peat
tom.p...@csiro.au From: CCP4 bulletin board [CCP4BB@JISCMAIL.AC.UK] On Behalf Of Herbert J. Bernstein [y...@bernstein-plus-sons.com] Sent: Wednesday, April 04, 2012 4:33 AM To: CCP4BB@JISCMAIL.AC.UK Subject: Re: [ccp4bb] very informative - Trends in Data

Re: [ccp4bb] very informative - Trends in Data Fabrication

2012-04-03 Thread Bryan Lepore
On the topic of MX fraud : could not an encryption algorithm be applied to answer the question of truth or falsity of a pdb/wwpdb/pdbe entry? has anyone proposed such an idea before? for example (admittedly this is a mess): * a detector parameter - perhaps the serial number - is used as a public

Re: [ccp4bb] very informative - Trends in Data Fabrication

2012-04-03 Thread Dale Tronrud
I'm not sure how encryption can solve a problem of truth or falsity. Public key encryption only says that the message that is decrypted using the public key must have been encrypted by someone who knows the private key. A person can use their private key to encrypt a lie as well as the truth.

Re: [ccp4bb] very informative - Trends in Data Fabrication

2012-04-03 Thread Kevin Jin
Dear All, Here may be another example for the importance of image storage. http://www.jinkai.org/DERA/DERA_1O0Y_3R12.html Regards, Kevin

Re: [ccp4bb] very informative - Trends in Data Fabrication

2012-04-03 Thread Bryan Lepore
On Tue, Apr 3, 2012 at 5:16 PM, Dale Tronrud det...@uoxray.uoregon.edu wrote: I'm not sure how encryption can solve a problem of truth or falsity. AFAIU any given checksum will tell you if a file is corrupted or not. My brain decided to interpret that as true or false. and  A person can

Re: [ccp4bb] very informative - Trends in Data Fabrication

2012-04-03 Thread Bernhard Rupp (Hofkristallrat a.D.)
. The skill of presentation is at least as important in Science as being right. Best, BR From: CCP4 bulletin board [mailto:CCP4BB@JISCMAIL.AC.UK] On Behalf Of Kevin Jin Sent: Tuesday, April 03, 2012 3:34 PM To: CCP4BB@JISCMAIL.AC.UK Subject: Re: [ccp4bb] very informative - Trends in Data

Re: [ccp4bb] very informative - Trends in Data Fabrication

2012-04-03 Thread Kevin Jin
. ** ** Best, BR ** ** *From:* CCP4 bulletin board [mailto:CCP4BB@JISCMAIL.AC.UK] *On Behalf Of *Kevin Jin *Sent:* Tuesday, April 03, 2012 3:34 PM *To:* CCP4BB@JISCMAIL.AC.UK *Subject:* Re: [ccp4bb] very informative - Trends in Data Fabrication ** ** Dear All

Re: [ccp4bb] very informative - Trends in Data Fabrication

2012-04-03 Thread Bosch, Juergen
@JISCMAIL.AC.UK] On Behalf Of Kevin Jin Sent: Tuesday, April 03, 2012 3:34 PM To: CCP4BB@JISCMAIL.AC.UKmailto:CCP4BB@JISCMAIL.AC.UK Subject: Re: [ccp4bb] very informative - Trends in Data Fabrication Dear All, Here may be another example for the importance of image storage. http

Re: [ccp4bb] very informative - Trends in Data Fabrication

2012-04-03 Thread Katherine Sippel
as important in Science as being right. ** ** Best, BR ** ** *From:* CCP4 bulletin board [mailto:CCP4BB@JISCMAIL.AC.UK] *On Behalf Of *Kevin Jin *Sent:* Tuesday, April 03, 2012 3:34 PM *To:* CCP4BB@JISCMAIL.AC.UK *Subject:* Re: [ccp4bb] very informative - Trends in Data

Re: [ccp4bb] very informative - Trends in Data Fabrication

2012-04-03 Thread Kendall Nettles
, 2012 3:34 PM To: CCP4BB@JISCMAIL.AC.UKmailto:CCP4BB@JISCMAIL.AC.UK Subject: Re: [ccp4bb] very informative - Trends in Data Fabrication Dear All, Here may be another example for the importance of image storage. http://www.jinkai.org/DERA/DERA_1O0Y_3R12.html Regards, Kevin -- Kevin Jin

Re: [ccp4bb] very informative - Trends in Data Fabrication

2012-04-03 Thread Zhijie Li
Hi, Regarding the online image file storage issue, I just googled cloud storage and had a look at the current pricing of such services. To my surprise, some companies are offering unlimited storage for as low as $5 a month. So that's $600 for 10 years. I am afraid that these companies will

Re: [ccp4bb] very informative - Trends in Data Fabrication

2012-04-03 Thread James Stroud
On Apr 3, 2012, at 7:19 PM, Katherine Sippel wrote: I would also consider looking into adding an RSS feed to your site so that those people interested in your articles can be informed without spamming the boards. Why continue to punish him? Adding an RSS feed means installing and

Re: [ccp4bb] very informative - Trends in Data Fabrication

2012-04-03 Thread Kendall Nettles
James makes an important point. I've come to regret my joke as showing poor manners. I hesitate to add to more email that no one cares about, but I do think it is important to contribute the idea that the positive tone of this forum needs to be protected. I apologize, and suggest my comments

Re: [ccp4bb] very informative - Trends in Data Fabrication

2012-04-03 Thread Ravi Nookala
@JISCMAIL.AC.UK mailto:CCP4BB@JISCMAIL.AC.UK] On Behalf Of Bernhard Rupp (Hofkristallrat a.D.) Sent: Sunday, April 01, 2012 06:06 To: CCP4BB@JISCMAIL.AC.UK mailto:CCP4BB@JISCMAIL.AC.UK Subject: Re: [ccp4bb] very informative - Trends in Data Fabrication

Re: [ccp4bb] very informative - Trends in Data Fabrication

2012-04-03 Thread Herman . Schreuder
03, 2012 9:31 AM To: CCP4BB@JISCMAIL.AC.UK Subject: Re: [ccp4bb] very informative - Trends in Data Fabrication The sad situation is that more and more scientists are becoming desperate (for funding or tenure or both) and are told 'publish or perish

Re: [ccp4bb] very informative - Trends in Data Fabrication

2012-04-03 Thread Dyda
I think that to review a paper containing a structure derived from crystallographic data should indeed involve the referee having access to coordinates and to the electron density. Without this access it is not possible to judge the quality and very often even the soundness of statements in the

Re: [ccp4bb] very informative - Trends in Data Fabrication

2012-04-03 Thread James Whisstock
Hi I was thinking about the last statement in the Acta editorial - It is important to note, however, that in neither of these cases was a single frame of data collected. Not one.. This brought me back to the images.. To date there is no global acceptance that original diffractiom images

Re: [ccp4bb] very informative - Trends in Data Fabrication

2012-04-03 Thread Bosch, Juergen
Hi Fred, I'll go public on this one. This happened to me. I will not reveal who reviewed my paper and which paper it was only that your naive assumption might not always be correct. I have learned my lesson and exclude people with overlapping interests (even though they actually might be the

Re: [ccp4bb] very informative - Trends in Data Fabrication

2012-04-03 Thread Mark J van Raaij
The remedy for the fact that some reviewers act unethically is not withholding coordinates and structure factors, but a more active role for the authors to denounce these possible violations and more effective investigations by the journals whose reviewers are suspected by the authors of

Re: [ccp4bb] very informative - Trends in Data Fabrication

2012-04-03 Thread Maria Sola i Vilarrubias
Mark, I know some stories (which of course I'll not post here) from the Crystallography field and from other fields where reviewers profit from the fact that suddenly they have new, interpreted data which fits very well with their own results. Stories like to block a manuscript or ask for more

Re: [ccp4bb] very informative - Trends in Data Fabrication

2012-04-03 Thread Mark J van Raaij
I don't agree, if we know a referee is dishonest we should try and ruin his whole career, not just prevent him from scooping us in this one case. Mark J van Raaij Laboratorio M-4 Dpto de Estructura de Macromoleculas Centro Nacional de Biotecnologia - CSIC c/Darwin 3 E-28049 Madrid, Spain tel.

Re: [ccp4bb] one datum many data? [was Re: [ccp4bb] very informative - Trends in Data Fabrication]

2012-04-02 Thread Manfred S. Weiss
Dear all, I find this discussion most amazing. Here, we are dealing with the most serious issue that happened to Macromolecular Crystallography since the Alabama case, and the whole discussion is centered around singular and plural and Greek and Latin words and what not. In psychology such

Re: [ccp4bb] one datum many data? [was Re: [ccp4bb] very informative - Trends in Data Fabrication]

2012-04-02 Thread Antony Oliver
To my mind it just points to the fact that many scientists are generally unable to focus on one task or 'thing' at a time. i.e. very short attention spans... [before the flamer's start ‹ this is meant as a joke] Tony. --- Dr Antony W Oliver Senior Research Fellow CR-UK DNA Repair Enzymes Group

Re: [ccp4bb] one datum many data? [was Re: [ccp4bb] very informative - Trends in Data Fabrication]

2012-04-02 Thread John R Helliwell
Dear Colleagues, This is a further instance of likely scientific fraud in macromolecular crystallography, ie under formal investigation at the relevant university. Both Bernhard and the Acta D and F Editors further document aspects in their written pieces related to the need for diffraction data

Re: [ccp4bb] one datum many data? [was Re: [ccp4bb] very informative - Trends in Data Fabrication]

2012-04-02 Thread Gerard Bricogne
Dear Manfred, I understand your surprise and indignation, but for the sake of fairness you might also remember that I argued rather insistently at the end of last year in favour of the deposition of raw diffraction images, which is the crux of this problem. With best wishes,

Re: [ccp4bb] very informative - Trends in Data Fabrication

2012-04-02 Thread jens Preben Morth
For the latest documentary on trolls in Norway see http://www.imdb.com/title/tt1740707/ The documentary describes both the classification system of Norwegian Trolls and why they are sensitive to sun light, i.e turn to stone. Depending in the species, some Trolls apparently prefer bridges and

Re: [ccp4bb] very informative - Trends in Data Fabrication

2012-04-02 Thread Herman . Schreuder
: Re: [ccp4bb] very informative - Trends in Data Fabrication I hope and believe that this is not the case. Even basically-trained crystallographers should be able to calculate andinterpret difference maps of the kind described by Bernhard. And with the EDS

Re: [ccp4bb] one datum many data? [was Re: [ccp4bb] very informative - Trends in Data Fabrication]

2012-04-02 Thread Boaz Shaanan
OK, following on our psychological displacement: The examples Pheobe gave are mostly of collective nouns http://en.wikipedia.org/wiki/Collective_noun to be distinguished from mass nouns: http://en.wikipedia.org/wiki/Mass_noun Strictly speaking, data is not a collective noun and is the plural

Re: [ccp4bb] very informative - Trends in Data Fabrication

2012-04-02 Thread David Schuller
I am surprised that James Holton was not listed as a co-author, I understand that he has been expending a great deal of effort into how to accurately fabricate data. -- === All Things Serve the Beam

Re: [ccp4bb] very informative - Trends in Data Fabrication

2012-04-02 Thread Herman . Schreuder
informative - Trends in Data Fabrication I am surprised that James Holton was not listed as a co-author, I understand that he has been expending a great deal of effort into how to accurately fabricate data. -- === All Things Serve

Re: [ccp4bb] one datum many data? [was Re: [ccp4bb] very informative - Trends in Data Fabrication]

2012-04-02 Thread Gerard DVD Kleywegt
Dear Manfred, Outside Germany, such excursions are called humour. If you are interested, here is the Wikipedia page for it: http://en.wikipedia.org/wiki/Humour --Gerard PS: It was on a Sunday so all levity was perpetrated in people's own time. Today we'll all be serious again and frown and

Re: [ccp4bb] very informative - Trends in Data Fabrication

2012-04-02 Thread Robert Sweet
I thought Ethan was looking for the verb -- you know, fishing!!! On Mon, 2 Apr 2012, jens Preben Morth wrote: For the latest documentary on trolls in Norway see http://www.imdb.com/title/tt1740707/ The documentary describes both the classification system of Norwegian Trolls and why they are

Re: [ccp4bb] one datum many data? [was Re: [ccp4bb] very informative - Trends in Data Fabrication]

2012-04-02 Thread Bernhard Rupp (Hofkristallrat a.D.)
datum many data? [was Re: [ccp4bb] very informative - Trends in Data Fabrication] Dear Manfred, Outside Germany, such excursions are called humour. If you are interested, here is the Wikipedia page for it: http://en.wikipedia.org/wiki/Humour --Gerard

Re: [ccp4bb] one datum many data? [was Re: [ccp4bb] very informative - Trends in Data Fabrication]

2012-04-02 Thread Francis E Reyes
[mailto:CCP4BB@JISCMAIL.AC.UK] On Behalf Of Gerard DVD Kleywegt Sent: Monday, April 02, 2012 8:04 AM To: CCP4BB@JISCMAIL.AC.UK Subject: Re: [ccp4bb] one datum many data? [was Re: [ccp4bb] very informative - Trends in Data Fabrication] Dear Manfred, Outside Germany, such excursions are called

Re: [ccp4bb] one datum many data? [was Re: [ccp4bb] very informative - Trends in Data Fabrication]

2012-04-02 Thread Andreas Förster
Dear Gerard, inside Germany it's apparently called German Humour. There's a Wikipedia entry for that as well. Go figure: http://en.wikipedia.org/wiki/German_humor Andreas (still living on Sunday time) On 02/04/2012 4:03, Gerard DVD Kleywegt wrote: Dear Manfred, Outside Germany, such

Re: [ccp4bb] very informative - Trends in Data Fabrication

2012-04-02 Thread Bernhard Rupp (Hofkristallrat a.D.)
[mailto:CCP4BB@JISCMAIL.AC.UK] On Behalf Of Bernhard Rupp (Hofkristallrat a.D.) Sent: Sunday, April 01, 2012 06:06 To: CCP4BB@JISCMAIL.AC.UK Subject: Re: [ccp4bb] very informative - Trends in Data Fabrication Hofkristallrat außer Dienst, is written as Bernhard - unless you are referring to some other

Re: [ccp4bb] one datum many data? [was Re: [ccp4bb] very informative - Trends in Data Fabrication]

2012-04-02 Thread Gerard DVD Kleywegt
Dear Andreas, That page confirms the old adage: German humour is no laughing matter. --Gerard On Mon, 2 Apr 2012, Andreas F?rster wrote: Dear Gerard, inside Germany it's apparently called German Humour. There's a Wikipedia entry for that as well. Go figure:

Re: [ccp4bb] one datum many data? [was Re: [ccp4bb] very informative - Trends in Data Fabrication]

2012-04-02 Thread George T. DeTitta
informative - Trends in Data Fabrication] Dear Manfred, Outside Germany, such excursions are called humour. If you are interested, here is the Wikipedia page for it: http://en.wikipedia.org/wiki/Humour --Gerard PS: It was on a Sunday so all levity was perpetrated in people's own time. Today we'll all

Re: [ccp4bb] very informative - Trends in Data Fabrication

2012-04-02 Thread Phoebe Rice
2012 08:41:02 -0700 From: CCP4 bulletin board CCP4BB@JISCMAIL.AC.UK (on behalf of Bernhard Rupp (Hofkristallrat a.D.) hofkristall...@gmail.com) Subject: Re: [ccp4bb] very informative - Trends in Data Fabrication To: CCP4BB@JISCMAIL.AC.UK Robbie has restored the PDB_REDO of 3k78

Re: [ccp4bb] very informative - Trends in Data Fabrication

2012-04-02 Thread Jacob Keller
I like your point--somehow we should enlist the evil inclination to power our science, a la Faust. How is it that those hackers are so innovative for so little reward? I remember a Smithsonian article years ago which quoted the calculated mean $/hr rate of money counterfeiters as being

Re: [ccp4bb] very informative - Trends in Data Fabrication

2012-04-02 Thread Prince, D Bryan
, April 02, 2012 1:25 PM To: CCP4BB@JISCMAIL.AC.UK Subject: Re: [ccp4bb] very informative - Trends in Data Fabrication I like your point--somehow we should enlist the evil inclination to power our science, a la Faust. How is it that those hackers are so innovative for so little reward? I remember

Re: [ccp4bb] one datum many data? [was Re: [ccp4bb] very informative - Trends in Data Fabrication]

2012-04-02 Thread Bosch, Juergen
Hm, last I checked my passport said German - still think I can make lots of fun of myself. Some Germans are epigenetically marked with humor-suppressor genes others not. Jürgen On Apr 2, 2012, at 11:03 AM, Gerard DVD Kleywegt wrote: Dear Manfred, Outside Germany, such excursions are called

Re: [ccp4bb] one datum many data? [was Re: [ccp4bb] very informative - Trends in Data Fabrication]

2012-04-02 Thread Kendall Nettles
My favorite part of the german humor link: Some German humorists such as Loriothttp://en.wikipedia.org/wiki/Vicco_von_B%C3%BClow use seriousness as means of humor. On Apr 2, 2012, at 1:38 PM, Bosch, Juergen wrote: Hm, last I checked my passport said German - still think I can make lots of

Re: [ccp4bb] one datum many data? [was Re: [ccp4bb] very informative - Trends in Data Fabrication]

2012-04-02 Thread Tim Gruene
-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 And the summary indicates that outside Germany = English speaking world - which probably unveals its author as American ;-) On 04/02/12 18:25, Gerard DVD Kleywegt wrote: Dear Andreas, That page confirms the old adage: German humour is no

Re: [ccp4bb] very informative - Trends in Data Fabrication

2012-04-02 Thread Maria Sola i Vilarrubias
CCP4BB@JISCMAIL.AC.UK (on behalf of Bernhard Rupp (Hofkristallrat a.D.) hofkristall...@gmail.com) Subject: Re: [ccp4bb] very informative - Trends in Data Fabrication To: CCP4BB@JISCMAIL.AC.UK Robbie has restored the PDB_REDO of 3k78 It is at www.cmbi.ru.nl/pdb_redo/others/3k78.tar.bz2

Re: [ccp4bb] very informative - Trends in Data Fabrication

2012-04-02 Thread Nat Echols
On Mon, Apr 2, 2012 at 11:00 AM, Maria Sola i Vilarrubias msv...@ibmb.csic.es wrote: About a wrongly fit compound, the reviewer can ask images about the model in a map calculated at a specific sigma and in different orientations. This will often be insufficient, I'm afraid. We generally assume

Re: [ccp4bb] very informative - Trends in Data Fabrication

2012-04-02 Thread Pete Meyer
Artem Evdokimov wrote: I can't resist asking: If we assume that the data fabrication techniques and the techniques for discovery of such activities should have the same sort of arms race as the development of viruses and anti-malvare software (but of course on a much more modest scale since

Re: [ccp4bb] very informative - Trends in Data Fabrication

2012-04-02 Thread Phoebe Rice
(on behalf of Bernhard Rupp (Hofkristallrat a.D.) hofkristall...@gmail.com) Subject: Re: [ccp4bb] very informative - Trends in Data Fabrication To: CCP4BB@JISCMAIL.AC.UK   Robbie has restored the PDB_REDO of 3k78   It is at www.cmbi.ru.nl/pdb_redo

Re: [ccp4bb] very informative - Trends in Data Fabrication

2012-04-02 Thread Randy Read
Vilarrubias msv...@ibmb.csic.es Subject: Re: [ccp4bb] very informative - Trends in Data Fabrication To: pr...@uchicago.edu Cc: CCP4BB@jiscmail.ac.uk Dear Phoebe, I cannot imagine myself delivering maps and coordinates (after years of work... I insist: after years of work

Re: [ccp4bb] one datum many data? [was Re: [ccp4bb] very informative - Trends in Data Fabrication]

2012-04-02 Thread Andreas Förster
That's pretty funny, isn't it? Andreas On 02/04/2012 6:52, Jacob Keller wrote: Sorry to beat a dead horse, but: * *Antiwitz* (/anti-joke/): A short, often absurd scene, which has the recognizable structure of a joke, but is illogical or lacking a punch-line. Example: /Two

Re: [ccp4bb] very informative - Trends in Data Fabrication

2012-04-01 Thread Anastassis Perrakis
I still believe Prof. Dr. Hofkristallrat außer Dienst, is written as Bernhard - unless you are referring to some other guy with a french name Bernard. And the book indeed is a bible of xtallography. Jürgen ausser Dienst ... now I get it ... my German is a lot worse than just spelling names

[ccp4bb] one datum many data? [was Re: [ccp4bb] very informative - Trends in Data Fabrication]

2012-04-01 Thread Paul Emsley
The PDBe page for 3k78 says: The experimental data has been deposited the data cif file says: data is under question Grump. Is it to late to refer to data as if there were more than one of them? Anyway, the data mtz file is here if you want to refine with it:

Re: [ccp4bb] one datum many data? [was Re: [ccp4bb] very informative - Trends in Data Fabrication]

2012-04-01 Thread Gerard Bricogne
Dear Paul, May I join the mostly silent chorus of Greek/Latin-aware grumps who wince when seeing data treated as singular when it is plural. Related instances are * a phenomenon (singular) vs. several phenomena (plural), * a criterion (singular) vs. several

Re: [ccp4bb] very informative - Trends in Data Fabrication

2012-04-01 Thread Robbie Joosten
. From: CCP4 bulletin board [CCP4BB@JISCMAIL.AC.UK] On Behalf Of Bernhard Rupp (Hofkristallrat a.D.) [hofkristall...@gmail.com] Sent: Saturday, March 31, 2012 12:42 PM To: CCP4BB@JISCMAIL.AC.UK Subject: Re: [ccp4bb] very informative - Trends in Data Fabrication

Re: [ccp4bb] one datum many data? [was Re: [ccp4bb] very informative - Trends in Data Fabrication]

2012-04-01 Thread George T. DeTitta
-To: Gerard Bricogne g...@globalphasing.com Subject: Re: [ccp4bb] one datum many data? [was Re: [ccp4bb] very informative - Trends in Data Fabrication] Dear Paul, May I join the mostly silent chorus of Greek/Latin-aware grumps who wince when seeing data treated as singular when it is plural

Re: [ccp4bb] one datum many data? [was Re: [ccp4bb] very informative - Trends in Data Fabrication]

2012-04-01 Thread Adrian Goldman
bulletin board CCP4BB@JISCMAIL.AC.UK Date: Sun, 1 Apr 2012 15:18:15 To: CCP4BB@JISCMAIL.AC.UK Reply-To: Gerard Bricogne g...@globalphasing.com Subject: Re: [ccp4bb] one datum many data? [was Re: [ccp4bb] very informative - Trends in Data Fabrication] Dear Paul, May I join the mostly

Re: [ccp4bb] one datum many data? [was Re: [ccp4bb] very informative - Trends in Data Fabrication]

2012-04-01 Thread Patrick Loll
Hear, hear! I'm glad to know I'm not the last grump left standing. When I raise this point every year, my students regard me with bemused stares, as though they've just seen a coelacanth swim past their window... On 1 Apr 2012, at 10:18 AM, Gerard Bricogne wrote: Dear Paul, May I join

Re: [ccp4bb] one datum many data? [was Re: [ccp4bb] very informative - Trends in Data Fabrication]

2012-04-01 Thread VAN RAAIJ , MARK JOHAN
another singular/plural grump: Recently we can read: phage are. Phage is singular, the plural is phages (and this does not have that much to do with latin or greek). more reading: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3109450/ Quoting Paul Emsley: The PDBe page for 3k78 says: The

Re: [ccp4bb] one datum many data? [was Re: [ccp4bb] very informative - Trends in Data Fabrication]

2012-04-01 Thread Antony Oliver
Think the jury might be out on this one... A quick snip from WikiDictionary... The plural word phages refers to different types of phage, whereas in common usage the word phage can be both singular and plural, referring in the plural sense to particles of the same type of phage. Maloy et al:

Re: [ccp4bb] one datum many data? [was Re: [ccp4bb] very informative - Trends in Data Fabrication]

2012-04-01 Thread Gerard DVD Kleywegt
Is it to late to refer to data as if there were more than one of them? Is it too late to explain the difference between to and too? --A much mellowed CD

Re: [ccp4bb] one datum many data? [was Re: [ccp4bb] very informative - Trends in Data Fabrication]

2012-04-01 Thread David Schuller
On 04/01/12 10:18, Gerard Bricogne wrote: Dear Paul, May I join the mostly silent chorus of Greek/Latin-aware grumps who wince when seeing data treated as singular when it is plural. When it are plural? At any rate, I heard a Nobel laureate use it incorrectly just two days ago. --

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