_netCDF4._ensure_nc_success
RuntimeError: NetCDF: HDF error
--
Ran 99 tests in 8.951s
FAILED (errors=1)
Does anyone know what the problem might be? A possible reason for the
error seems to be that the HDF5 file is corrupt, but can that really be
the case here?
Cheers,
Loris
--
Dr. Loris Bennett (Herr/Mr)
FUB-IT (ex-ZEDAT), Freie Universität Berlin
t; easy to work around, see the discussion at
> https://github.com/easybuilders/easybuild-easyconfigs/pull/11386#issuecomment-700511479
>
>
> regards,
>
> Kenneth
>
> On 26/01/2024 08:48, Loris Bennett wrote:
>> Hi,
>> There is a known problem with Qt5 which ca
long, which I suspect is tripping a problem which occurs when the file
name is 255 characters long.
Has any one else had this issue? Is there another solution other than
simply shortening the path, as I will probably do via
architecture-dependent soft links?
Cheers,
Loris
--
Dr. Loris Bennett
qos=prio
module purge
module add EasyBuild
sleep 60
eb GAMESS-US-20230930-R2-gompi-2022a.eb --robot --from-pr=19310
--include-easyblocks-from-pr=3047 --parallel=8
The options to 'orterun'
orterun -np 8 --npernode 8
don't look right to me.
Cheers,
Loris
[snip (167 lines)]
--
Dr. L
enneth
>
> On 03/01/2024 13:34, Loris Bennett wrote:
>> Hi Borut,
>> Borut Rozman writes:
>>
>>> Hi everyone,
>>>
>>> Has anyone had a chance on building dorado 0.5.0 with foss 2022a and
>>> cuda 11.7? I made it work with binary - cpu only
ke any progress with this?
Cheers,
Loris
--
Dr. Loris Bennett (Herr/Mr)
FUB-IT (ex-ZEDAT), Freie Universität Berlin
050 Brussel
> https://hpc.vub.be
>
>
>
>
>
> From: easybuild-requ...@lists.ugent.be
> on behalf of Loris Bennett
>
> Sent: Tuesday, 19 December 2023 16:44
> To: easybuild@lists.ugent.be
> Subject: Re: [easybuild] Reason for no recent US-GAMESS?
>
> Hi Alex,
>
> Scientific Data & Compute
> VUB - Informatie & Communicatietechnologie
> Pleinlaan 9 - 1050 Brussel
> https://hpc.vub.be
>
>
>
>
> ____
> From: easybuild-requ...@lists.ugent.be
> on behalf of Loris Bennett
>
> S
user-given node lists.
is trying to tell me.
[snip (182 lines)]
Cheers,
Loris
--
Dr. Loris Bennett (Herr/Mr)
FUB-IT (ex-ZEDAT), Freie Universität Berlin
>
> Scientific Data & Compute
> VUB - Informatie & Communicatietechnologie
> Pleinlaan 9 - 1050 Brussel
> https://hpc.vub.be
>
>
>
>
> ________
> From: easybuild-requ...@lists.ugent.be
> on behalf of Loris Bennett
>
> Sent: Monday, 11
_____
> From: easybuild-requ...@lists.ugent.be
> on behalf of Loris Bennett
>
> Sent: Wednesday, 6 December 2023 17:12
> To: easybuild@lists.ugent.be
> Subject: Re: [easybuild] Reason for no recent US-GAMESS?
>
> Loris Bennett writes:
>
>>
d regards,
>
> Alex Domingo
>
> Scientific Data & Compute
> VUB - Informatie & Communicatietechnologie
> Pleinlaan 9 - 1050 Brussel
> https://hpc.vub.be
>
>
>
>
>
> From: easybuild-requ...@lists.ugent.be
> on behalf
compiler names, libraries, message passing libraries,
and so forth.
You can quit at any time by pressing control-C, and then .
Please open a second window by logging into your target machine,
i
--
Dr. Loris Bennett (Herr/Mr)
ZEDAT, Freie Universität Berlin
Loris Bennett writes:
> Loris Bennett writes:
>
>> Hi,
>>
>> Before I attempt to update the EC for US-GAMESS I was wondering whether
>> there was a specific reason why the latest one in EasyBuild is
>>
>> GAMESS-US-20180214-R1-foss-2016b.eb
Loris Bennett writes:
> Hi,
>
> Before I attempt to update the EC for US-GAMESS I was wondering whether
> there was a specific reason why the latest one in EasyBuild is
>
> GAMESS-US-20180214-R1-foss-2016b.eb
>
> i.e. over 5 years old. Has inter
no more recent ECs?
Cheers,
Loris
--
Dr. Loris Bennett (Herr/Mr)
ZEDAT, Freie Universität Berlin
Loris Bennett writes:
> Hi,
>
> Building Clang via Clang-16.0.6-GCCcore-12.3.0.eb fails for me.
>
> The log file seems a bit messed up, presumably because I was building
> with 40 threads, so I hope I have managed to extract the relevant parts
> (see below). Although the p
/Clang/16.0.6/GCCcore-12.3.0/llvm.obj.2'
make: *** [all] Error 2
(at
easybuild/software/EasyBuild/4.8.2/lib/python3.6/site-packages/easybuild/tools/run.py:681
in parse_cmd_output)
--
Dr. Loris Bennett (Herr/Mr)
ZEDAT, Freie Universität Berlin
be fixed by installing poetry (pip install ) under normal
> circumstances but in this case?
> Any idea?
I don't think poetry should appear in this context. Are you sure that
your environment is clean? Are you using a dedicated, minimalistic
account for building software, rather than a personal a
Hi Jakob,
Jakob Schiotz writes:
> Sorry for being late in replying, the spam filter held your mail.
No problem.
>> On 6 Nov 2023, at 15.21, Loris Bennett wrote:
>>
>> Hi Jakob,
>>
>> Jakob Schiotz writes:
>>
>>> At our cluster, the differe
ing). You should take a look at the EESSI bot as it can handle the
> workflow you
> describe.
>
> Alan
>
> On 03-Nov-23 11:08 AM, Loris Bennett wrote:
>
> Hi,
>
> We need to manage an heterogeneous cluster and I am looking at how to
> organise building the softwar
Niflheim_system/EasyBuild_modules/#setting-the-cpu-hardware-architecture
Because the file system which contains, amongst other things, EasyBuild,
is already mounted, I was planning to use links rather than something
like autofs.
Cheers,
Loris
> Best regards
>
> Jakob
>
>
&g
error-free. It is possible
> that information may be intercepted, corrupted, lost, destroyed, arrive late
> or
> incomplete or contain viruses. The sender does not accept liability for any
> errors or omissions in the contents of this message, which arise as a result
> of e-mail
> transmission.
>
> Red Oak Consulting is registered in England and Wales, Registration No.
> OC313216 Registered Office Pure Offices, Hatherley Lane, Cheltenham, GL51 6SH
>
--
Dr. Loris Bennett (Herr/Mr)
ZEDAT, Freie Universität Berlin
, this seems to be the latest release.
Is this a known issue?
Cheers,
Loris
--
Dr. Loris Bennett (Herr/Mr)
ZEDAT, Freie Universität Berlin
space
is cheap and just install binary and 'SYSTEM' packages for each
architecture in order to simplify things?
Any help/comments much appreciated.
Cheers,
Loris
--
Dr. Loris Bennett (Herr/Mr)
ZEDAT, Freie Universität Berlin
/easyconfigs/r/RStudio-Server/RStudio-Server-4.2-gcccoreflexiblas-2020a.eb
>
>
> Each user loads the module in a slurm job and can start it from a JupyterLab
> instance for example, or from an interactive job.
>
> Cheers,
>
> On Thu, Nov 2, 2023 at 11:56
with? If
not, is it just supposed be started by an admin and run on the head
node?
Cheers,
Loris
--
Dr. Loris Bennett (Herr/Mr)
ZEDAT, Freie Universität Berlin
option '--robot'? This should cause all
missing dependencies, such as the appropriate version of the compile, to
be built automatically.
Cheers,
Loris
> Sorry for the confusion,
> Borut
>
>
> On Wed, 2023-10-25 at 07:48 +0200, Loris Bennett wrote:
>> Hi Borut,
>>
>
stem provides, you should
still be able to build toolchains with later versions. For example, the
default version of GCC on our system is 4.8.5, but we have software
built with versions 7.3.0 to 12.2.0.
Or have I misunderstood your problem?
Cheers,
Loris
--
Dr. Loris Bennett (Herr/Mr)
ZEDAT, Freie Universität Berlin
uch as Bazel, if I remember
correctly, take ages by themselves.
As you wrote on Friday, I assume that by now, Monday, the installation
may have finished :-)
Cheers,
Loris
> Kind regards
> Roberto
>
> Il mercoledì 11 ottobre 2023 15:55:39 GMT+1, Loris Bennett
> ha scritto:
>
Åke Sandgren writes:
> It probably failed on something else before that, you need to go hunting in
> the output log.
I couldn't find anything else which seems relevant.
The full log is below.
Cheers,
Loris
== 2023-10-12 16:22:23,390 easyblock.py:313 INFO This is EasyBuild 4.8.1
an idea what the problem might be?
Cheers,
Loris
--
Dr. Loris Bennett (Herr/Mr)
ZEDAT, Freie Universität Berlin
We change the tmpdir to prevent /tmp on the
node where the build job runs from filling up, as other jobs may also be
writing to there.
HTH
Loris
--
Dr. Loris Bennett (Herr/Mr)
ZEDAT, Freie Universität Berlin
corresponding architecture-specific packages have been
build. However, maybe I can get around that with a bit of creative soft
linking.
Cheers,
Loris
> Alan
>
> On 22-Sep-23 9:15 AM, Loris Bennett wrote:
>> Dear Stefan,
>>
>> "Dr. Stefan Harfst" writes
an
>
> --
> Scientific Computing
>
> Carl von Ossietzky University Oldenburg
> School of Mathematics and Natural Sciences
> 26111 Oldenburg, Germany
>
> Office: W03 1-139
> Phone: +49-441-798 3147
> E-Mail: stefan.har...@uni-oldenburg.de
> www: http://www.uni-oldenburg
deactivate the EasyBuild module.
Does that mean I have to reinstall EasyBuild under
/nfs/easybuild/arch/generic
which I guess would be the most consistent solution, or is there an
alternative?
Cheers,
Loris
--
Dr. Loris Bennett (Herr/Mr)
ZEDAT, Freie Universität Berlin
11.3.0, or
how do I get around this issue?
Cheers,
Loris
--
Dr. Loris Bennett (Herr/Mr)
ZEDAT, Freie Universität Berlin
Loris Bennett writes:
> Hi Kenneth,
>
> Kenneth Hoste writes:
>
>> Hi Loris,
>>
>> On 29/08/2023 08:19, Loris Bennett wrote:
>>> Hi,
>>> When I try to install 'dorado' via
>>>dorado-0.3.1-foss-2022a-CUDA-11.7.0.eb
>>&
Hi Kenneth,
Kenneth Hoste writes:
> Hi Loris,
>
> On 29/08/2023 08:19, Loris Bennett wrote:
>> Hi,
>> When I try to install 'dorado' via
>>dorado-0.3.1-foss-2022a-CUDA-11.7.0.eb
>> the tests stall at some point. The process tree is as follows:
>
lse I could look at?
Cheers,
Loris
--
Dr. Loris Bennett (Herr/Mr)
ZEDAT, Freie Universität Berlin
owever, thanks for following up.
Cheers,
Loris
> regards,
>
> Kenneth
>
> On 08/06/2023 13:51, Loris Bennett wrote:
>> Hi,
>> For
>>c-ares-1.18.1-GCCcore-11.2.0.eb
>> both the name of the source file as well as the checksum have
>> chang
:
libmariadbd.a(viossl.c.o): in function `ssl_do.isra.0':
viossl.c:(.text+0x5d): undefined reference to `SSL_set_options'
...
Does anyone know what the issue might be? I am compiling on a system
with OpenSSL 1.0.2k.
Cheers,
Loris
--
Dr. Loris Bennett (Herr/Mr)
ZEDAT, Freie Universität Berlin
Loris Bennett
writes:
> Hi,
>
> We are looking at how to manage the heterogeneity within our cluster.
>
> The page
>
> https://docs.easybuild.io/controlling-compiler-optimization-flags/
>
> refers to the following link
>
> https://easybuild.io/files/sciCORE
,
but these aren't available on your machine.
Has any one got any ideas about how one should deal with such
differences below the level of the microarchitecture?
Cheers,
Loris
--
Dr. Loris Bennett (Herr/Mr)
ZEDAT, Freie Universität Berlin
Loris Bennett writes:
> Hi,
>
> With
>
> eb netcdf4-python-1.6.1-foss-2022a.eb --robot
>
> I get the following error
>
> Installing collected packages: netCDF4
> Successfully installed netCDF4-1.6.1
>
> == 2023-06-27 13:29:04,508 run.py:236 INFO runn
f+0x6f)[0x2ae7c73f]
...
There seems to be some issue with our fabric. Does anyone have an idea
what might be causing this or where to look?
Cheers,
Loris
--
Dr. Loris Bennett (Herr/Mr)
ZEDAT, Freie Universität Berlin
t that was my most recent experience.
>
> All the best,
>
> Lev
>
>
> From: easybuild-requ...@lists.ugent.be
> on behalf of Loris Bennett
>
> Sent: Thursday, 1 June 2023 12:21 AM
> To: easybuild@lists.ugent.be
> S
the developers may have misnamed this release and
then corrected it after the ECs were written.
What is the correct way of submitting a fix? Do I just open a PR with
the corrected version of the file?
Cheers,
Loris
--
Dr. Loris Bennett (Herr/Mr)
ZEDAT, Freie Universität Berlin
21b
>
>
> From: easybuild-requ...@lists.ugent.be
> on behalf of Loris Bennett
>
> Sent: Tuesday, May 30, 2023 16:11
> To: easybuild
> Subject: [easybuild] EC for medaka 1.8.0
>
> Hi,
>
> Does anyone have a working EC for medaka 1.8.0? Other
Hi,
Does anyone have a working EC for medaka 1.8.0? Otherwise I would have
a go at writing one?
Cheers,
Loris
--
Dr. Loris Bennett (Herr/Mr)
ZEDAT, Freie Universität Berlin
lib.loc = lib,
character.only = TRUE, logical.return = TRUE)))
20: tools:::.test_load_package("Rmpi",
"/trinity/shared/easybuild/software/R/4.2.1-foss-2022a/lib64/R/library/00LOCK-Rmpi/00new")
An irrecoverable exception occurred. R is aborting now ...
ERROR: loading failed
Any ideas what might be happening?
Cheers,
Loris
--
Dr. Loris Bennett (Herr/Mr)
ZEDAT, Freie Universität Berlin
ineligible lines.
>
> // Lars Viklund, HPC2N
> --
> From: easybuild-requ...@lists.ugent.be on
> behalf of Loris Bennett
> Sent: Wednesday, May 24, 2023 11:49
> To: easybuild@lists.ugent.be
> Subject: Re: [easybuild] file-5.43-GCCcore-11.3.0.eb failure
Åke Sandgren writes:
> Which OS is this?
CentOS 7.9
> I see no problems on Ubuntu 20.04 or 22.04
>
>
> From: easybuild-requ...@lists.ugent.be on
> behalf of Loris Bennett
> Sent: Wednesday, May 24, 2023 8:24
> To: easybui
);
| ^~
make[3]: *** [seccomp.o] Error 1
Any ideas what might be going wrong?
Cheers,
Loris
--
Dr. Loris Bennett (Herr/Mr)
ZEDAT, Freie Universität Berlin
libpoppler.so.46 => /lib64/libpoppler.so.46 (0x2f375000)
$
Is a dependency on poppler missing in the EC or it it expected that the OS
provides poppler?
Cheers,
Loris
--
Dr. Loris Bennett (Herr/Mr)
ZEDAT, Freie Universität Berlin
> please do so first, and see if that fixes the issue.
> Otherwise you can try compiling with
> toolchainopts = {'vectorize': False}
> in the easyconfig.
>
> Cheers,
> Bart
>
> On Thu, 30 Mar 2023 at 05:30, Loris Bennett
> wrote:
>>
>> Hi,
>>
>> W
(> 150)
This error is mentioned here:
https://github.com/easybuilders/easybuild-easyconfigs/pull/16961
However, I don't think I have an issue with hooks or with old
easyconfigs in the working directory.
Any ideas what else could be going wrong?
Cheers,
Loris
--
Dr. Loris Bennett (Herr
Nielsen wrote:
>> External Email
>>
>> Hi Loris,
>> It would be great if you could make a PR against libxc! I'm not
>> that
>> experienced with Git usage ;-)
>> Thanks,
>> Ole
>> On 3/28/23 13:03, Loris Bennett wrote:
>>> Hi Ole,
>>>
.tar.gz
Yes, I think it probably should, since, as far as I can tell, this is
probably the canonical version. Have you already got a patched EC you
could use for a pull request, or shall I created one?
Cheers,
Loris
> Thanks,
> Ole
>
> On 3/28/23 11:41, Loris Bennett wrote:
>> The
and hope that www.tddft.org
stops being so flaky, or should the EC (or at least the next version
thereof) be changed to use Gitlab as the source, since this now seems to
be the place were development occurs?
Cheers,
Loris
--
Dr. Loris Bennett (Herr/Mr)
ZEDAT, Freie Universität Berlin
gt; /usr/local/lib/python3.6/site-packages/
>
> Did anyone else experience this behaviour? And wouldn’t this kind of error
> have been caught by one of the unit tests while in testing?
We have installed EasyBuild 4.7.0 successfully on CentOS 7.9.
Does it still fail if you do
PYTHONPATH= eb --install-latest
?
Cheers,
Loris
--
Dr. Loris Bennett (Herr/Mr)
ZEDAT, Freie Universität Berlin
laid out in
> this fashion.
>
> Best regards,
> Steen
> ____
> From: easybuild-requ...@lists.ugent.be
> on behalf of Loris Bennett
>
> Sent: Tuesday, February 7, 2023 8:58:13 AM
> To: easybuild
> Subject: [easybuild] [ma
Of course, this is not a viable solution for software that is not laid out
> in this fashion.
>
> Best regards,
> Steen
> ________
> From: easybuild-requ...@lists.ugent.be on
> behalf of Loris Bennett
> Sent: Tuesday, February 7,
easybuild/software/EasyBuild/4.7.0/lib/python3.6/site-packages/easybuild/tools/run.py:643
in parse_cmd_output)
Should this work or is this the result of some incompatibility between
Intel and AMD?
Cheers,
Loris
--
Dr. Loris Bennett (Herr/Mr)
ZEDAT, Freie Universität Berlin
etting.
With GROMACS-2019.4-foss-2019b.eb that is indeed what I get.
Obviously the local EC that existed was borked, so sorry for the noise.
Cheers,
Loris
>
> From: easybuild-requ...@lists.ugent.be
> on behalf of Loris Bennett
>
> Sent: W
-2019a
just gives me a single precision version.
Where am I going wrong?
Cheers,
Loris
--
Dr. Loris Bennett (Herr/Mr)
ZEDAT, Freie Universität Berlin
have this
limitation (or the limit is higher).
Often (usually?) users are mainly interested in the man page for the
program they have loaded explicitly via 'module add' and less in that
for, say, 'binutils'.
Does anyone know of a workaround for this issue?
Cheers,
Loris
--
Dr. Loris Bennett
>
> -Original Message-
> From: easybuild-requ...@lists.ugent.be On
> Behalf Of Loris Bennett
> Sent: 31 January 2023 11:54
> To: easybuild@lists.ugent.be
> Subject: Re: [easybuild] Install fails due to tests run despite
> --skip-test-cases --ignore-test-failure
>
&
of incremental testing. As
--ignore-test-failure didn't ignore test failure, I tried
--skip-test-cases as well, which unfortunately didn't skip the test
cases.
Cheers,
Loris
> Sam
>
> On Tue, Jan 31, 2023 at 11:52 AM Loris Bennett
> wrote:
>
> Hi,
>
> I am ru
urm-12012527.out
3
:-/
Cheers,
Loris
--
Dr. Loris Bennett (Herr/Mr)
ZEDAT, Freie Universität Berlin
can get my sword out ... (https://xkcd.com/303/)
Cheers,
Loris
> On Fri, 2 Dec 2022 at 11:58, Loris Bennett wrote:
>
> "Alan O'Cais" writes:
>
> > Ever configuartion setting can be done in multiple ways, see
> https://easybuilders.github.io/easybuild-tut
for `module use
> /path/to//modules/all`
OK
> On Fri, 2 Dec 2022 at 11:01, Loris Bennett wrote:
>
> I was basing my approach on the first answer given here:
>
>
> https://www.reddit.com/r/HPC/comments/y1gdch/how_to_manage_easybuild_on_hpc_with_multiple_cpu/
>
rs which would make one preferable to the other?
> On Fri, 2 Dec 2022 at 09:55, Loris Bennett wrote:
>
> Hi Alan,
>
> Is EASYBUILD_MODULEPATH documented anywhere? It is not set in my
> environment and my search on the web didn't turn up any results.
>
> Cheers,
>
. This means you are overwriting the existing module
> tree. You don't
> want this, instead you build a new module tree somewhere else. Since the tree
> will be empty, EasyBuild will also install all the deps.
>
> On Fri, 2 Dec 2022 at 09:27, Loris Bennett wrote:
>
> Hi Ole,
>
>
Hi Ole,
Ole Holm Nielsen writes:
> Hi Loris,
>
> On 12/2/22 08:27, Loris Bennett wrote:
>> How do I force a total rebuild of, say, a foss toolchain for a different
>> CPU architecture?
>> Up to now I had a homogeneous cluster with Intel Xeon CPUs, now we
>> hav
to directory for the new
architecture and prepended a corresponding directory for the modules to
MODULEPATH. However, running EasyBuild with the option --force just
rebuilds the package specified, not the dependencies.
What is the correct way to go about this?
Cheers,
Loris
--
Dr. Loris Bennett
ng the build to fail.
Cheers,
Loris
--
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ZEDAT, Freie Universität Berlin
'm just a bot (boegelbot v20200716.01)
> Please talk to my owner @boegel if you notice you me acting stupid),
> or submit a pull request to https://github.com/boegel/boegelbot fix the
> problem.
>
> —
> Reply to this email directly, view it on GitHub, or unsubscribe.
> You are receiving this because you were mentioned.
>
--
Dr. Loris Bennett (Herr/Mr)
ZEDAT, Freie Universität Berlin Email loris.benn...@fu-berlin.de
ng the test step (e.g. unit tests)
>> (default: False)
>>
>>
>>> On 11. Oct 2022, at 16:59, Loris Bennett >> <mailto:loris.benn...@fu-berlin.de>> wrote:
>>>
>>> Hi,
>>>
>>> Is there an option to skip the sanity
Hi,
Is there an option to skip the sanity check and still install everything
and create the module file?
Cheers,
Loris
--
Dr. Loris Bennett (Herr/Mr)
ZEDAT, Freie Universität Berlin Email loris.benn...@fu-berlin.de
Hi Kenneth,
Loris Bennett writes:
[snip (41 lines)]
> I uninstalled the package
>
> python36-keyring
>
> and was able to update EasyBuild.
[snip (229 lines)]
Unistalling this package on CentOS 7 does indeed break the Github
integration:
Checking status of GitHub integrati
Hi Kenneth,
Loris Bennett writes:
> Hi Kenneth,
>
> Kenneth Hoste writes:
>
>> Hi Loris,
>>
>> On 12/09/2022 13:12, Loris Bennett wrote:
>>> Hi Kenneth,
>>> Kenneth Hoste writes:
>>>
>>>> Dear EasyBuilders,
Hi Kenneth,
Kenneth Hoste writes:
> Hi Loris,
>
> On 12/09/2022 13:12, Loris Bennett wrote:
>> Hi Kenneth,
>> Kenneth Hoste writes:
>>
>>> Dear EasyBuilders,
>>>
>>> We're happy to announce the release of EasyBuild v4.6.1 [1].
>&
gt;
>> Jakob
>>
>> --
>> Jakob Schiøtz, professor, Ph.D.
>> Department of Physics
>> Technical University of Denmark
>> DK-2800 Kongens Lyngby, Denmark
>>
>>
>>
>>
>>> On 9 Aug 2022, at 11.52, Loris Bennett wrote:
>
Loris Bennett writes:
> Loris Bennett writes:
>
>> Hi Kenneth,
>>
>> Kenneth Hoste writes:
>>
>>> Hi Loris,
>>>
>>> Two things are needed in order for --new-pr to work:
>>>
>>> 1) You need a GitHub token available, w
/C++, Java) but I could find
no mention of a specific version.
So my questions are:
1. What should 'versionsuffix' be used for?
2. Does CPLEX really need Python as a dependency?
Cheers,
Loris
--
Dr. Loris Bennett (Herr/Mr)
ZEDAT, Freie Universität Berlin Email loris.benn...@fu
Loris Bennett writes:
> Hi Kenneth,
>
> Kenneth Hoste writes:
>
>> Hi Loris,
>>
>> Two things are needed in order for --new-pr to work:
>>
>> 1) You need a GitHub token available, which allows EasyBuild to take care of
>> actually opening the
ase enter password for encrypted keyring:
u'my_secret_token'
> Note: if you share the results of these tests, be careful to not accidentally
> share your GitHub token... ;)
So everything seems to work. Even the new PR was created, but I just
seem to be getting spurious error messages. Very o
/libevent_pthreads.la'
seems to be moved
/trinity/shared/easybuild/software/binutils/2.35-GCCcore-10.2.0/bin/ld.gold:
error: cannot find -lpsm_infinipath
Does anyone know what the problem might be?
Cheers,
Loris
--
Dr. Loris Bennett (Herr/Mr)
ZEDAT, Freie Universität Berlin Email loris.benn
er having done in the past.
Does anyone know what the issue might be?
Cheers,
Loris
--
Dr. Loris Bennett (Herr/Mr)
ZEDAT, Freie Universität Berlin Email loris.benn...@fu-berlin.de
lders/easybuild-easyconfigs/pull/11695
>
> I don't think I ever found any application that used it, so, it wasn't
> strongly motivated to be rushed in and we have nothing to test the setup on.
>
> Best regards, Mikael
>
> On Wed, Jun 8, 2022 at 9:15 AM Loris Bennett
> wro
for disabling MPI?
Cheers,
Loris
--
Dr. Loris Bennett (Herr/Mr)
ZEDAT, Freie Universität Berlin Email loris.benn...@fu-berlin.de
ls due to the unfulfilled
dependency on TensorFlow 2.7.0.
> On Wed, 18 May 2022 at 13:49, Loris Bennett
> wrote:
>
> Hi Alan,
>
> "Alan O'Cais" writes:
>
> > Hmm, the patch for that
> (https://github.com/easybuilders/easybuild-easyconfigs/blob/develop/easybuild/
https://github.com/nanoporetech/medaka/blob/master/Makefile#L76
>
> You probably need to patch the Makefile so an EB-provided version of those
> downloaded deps are used.
>
> On Tue, 17 May 2022 at 15:27, Loris Bennett
> wrote:
>
> Hi,
>
> I have successful
with the following
error:
ld.gold: error: libhts.a(hts.o): requires unsupported dynamic reloc 11;
recompile with -fPIC
Does anyone have an idea what might be causing this?
Cheers,
Loris
--
Dr. Loris Bennett (Herr/Mr)
ZEDAT, Freie Universität Berlin Email loris.benn...@fu-berlin.de
ub.com/easybuilders/easybuild-easyconfigs/pull/14815. Note that
> you need to use https://github.com/easybuilders/easybuild-easyblocks/pull/2213
> (`--include-easyblocks-from-pr=2213`), still need to get that merged...
>
> On Mon, 2 May 2022 at 13:28, Loris Bennett wrote:
>
> Hi,
>
&
Hi,
Has anyone tried building the current version of LAMMPS for a reasonably
up-to-date toolchain (ideally foss/2021b)?
Cheers,
Loris
--
Dr. Loris Bennett (Herr/Mr)
ZEDAT, Freie Universität Berlin Email loris.benn...@fu-berlin.de
anyone
had already had a go.
Cheers,
Loris
--
Dr. Loris Bennett (Herr/Mr)
ZEDAT, Freie Universität Berlin Email loris.benn...@fu-berlin.de
ris
> Alan
>
> On Mon, 7 Mar 2022 at 14:18, Loris Bennett wrote:
>
> Hi,
>
> With the attached EC I have managed to build a piece of software
> called FORCE successfully, but no
>
>prepend_path("PATH",...)
>
> is produced in the module file.
to accept command line overrides and then
> submitting a
> pull request.
>
> --Kevin
>
> On Fri, Mar 4, 2022 at 7:58 AM Loris Bennett
> wrote:
>
> Hi,
>
> I am looking at the program FORCE[1], which has no configure script,
> just a Makefile, so
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