Re: Error in Lyx Sweave (Noweb)

\Resources\examples). Sweave no longer depends on specific layouts. This is a significant change in LyX 2.0. Regards, Yihui -- Yihui Xie xieyi...@gmail.com Phone: 515-294-2465 Web: http://yihui.name Department of Statistics, Iowa State University 2215 Snedecor Hall, Ames, IA On Thu, May 12, 2011

Re: Error in Lyx Sweave (Noweb)

--Paths--Temporary directory. You need to restart LyX after modifying this setting and make sure the directory exists. Regards, Yihui -- Yihui Xie xieyi...@gmail.com Phone: 515-294-2465 Web: http://yihui.name Department of Statistics, Iowa State University 2215 Snedecor Hall, Ames, IA On Fri, May 13

Re: Lyx 2.0 Sweave Error

Hi Amy, It will help a lot if you can post the detailed message when you ran Sweave in LyX. You can turn on the message panel by the menu View--View messages, then take a look at the log message there. Regards, Yihui -- Yihui Xie xieyi...@gmail.com Phone: 515-294-2465 Web: http://yihui.name

Re: SWeave chunk in enumerate \item? + pgfSweave?

. Regards, Yihui -- Yihui Xie xieyi...@gmail.com Phone: 515-294-2465 Web: http://yihui.name Department of Statistics, Iowa State University 2215 Snedecor Hall, Ames, IA On Sun, May 22, 2011 at 9:55 AM, Lucas lth...@mail.unomaha.edu wrote: Is it possible to have a SWeave chunk inside an enumerate

Re: SWeave chunk in enumerate \item? + pgfSweave?

, Yihui -- Yihui Xie xieyi...@gmail.com Phone: 515-294-2465 Web: http://yihui.name Department of Statistics, Iowa State University 2215 Snedecor Hall, Ames, IA On Sun, May 22, 2011 at 6:57 PM, Lucas lth...@mail.unomaha.edu wrote: Yihui Xie xie at yihui.name writes: Hi, I think you can

Re: R Gaphics for Lyx

--compact-vignettes in R CMD build). Graham, is your script portable to Windows and Mac? Could you share it with us? Maybe we can propose this feature to LyX developers. It will be definitely helpful. Regards, Yihui -- Yihui Xie xieyi...@gmail.com Phone: 515-294-2465 Web: http://yihui.name

Re: R Gaphics for Lyx

OK, I see. Thanks! Both qpdf or pdftk can be used to compress PDF files. It is still unclear to me which one is better. Regards, Yihui -- Yihui Xie xieyi...@gmail.com Phone: 515-294-2465 Web: http://yihui.name Department of Statistics, Iowa State University 2215 Snedecor Hall, Ames, IA On Mon

Re: Chinese document compilation

I would recommend you to look at the LaTeX source (View -- View Source) in that buggy chapter too. I feel it might be due to the encoding or language setting (are you sure it is also UTF8 and the language setting is Chinese?) Regards, Yihui -- Yihui Xie xieyi...@gmail.com Phone: 515-294-2465 Web

Re: lyx2 and sweave

, but I don't know which encoding is correct for German. What was the error message (View--View Messages) in R? (not warnings) Did it say something like iconv() failed? Regards, Yihui -- Yihui Xie xieyi...@gmail.com Phone: 515-294-2465 Web: http://yihui.name Department of Statistics, Iowa State

Re: Error with Lyx 2.0 and Sweave

] to be ISO-8859-15, which is obviously not a directory name. Regards, Yihui -- Yihui Xie xieyi...@gmail.com Phone: 515-294-2465 Web: http://yihui.name Department of Statistics, Iowa State University 2215 Snedecor Hall, Ames, IA On Tue, Jun 7, 2011 at 6:22 AM, Franz Jimeno jimenofranci...@uniovi.es

Re: 关于首行标点的求助

lines -- LyX treats this paragraph as if it had three words so the space will be extremely wide. But again, this is no big deal, since we can use inter-word spaces \ instead of ordinary spaces to make the document look better (inter-word spaces do not get stretched). Regards, Yihui -- Yihui Xie

Re: LyX2 R sweave

I guess this converter needs Rscript to be in your PATH variable. Furthermore, you'd better put Sweave.sty in your texmf tree. Regards, Yihui -- Yihui Xie xieyi...@gmail.com Phone: 515-294-2465 Web: http://yihui.name Department of Statistics, Iowa State University 2215 Snedecor Hall, Ames, IA

Re: Bizarre R (TSA package) + Sweave LaTeX error

=diff(bluebird)[,1],x=diff(bluebird)[,2],ylab='CCF', main = 'no special characters here') 2. use sanitize=TRUE in your chunk options (so that will be replaced by \); see ?sanitizeTexString in the tikzDevice package for details Regards, Yihui -- Yihui Xie xieyi...@gmail.com Phone: 515-294-2465 Web

Re: Question on using Lyx 2.0 with Sweave for R 2.13.0

Is there a converter from Sweave to LaTeX? Check it in the menu Tools--Preferences--Converters. Normally you should have at least four converters from Sweave to different types of LaTeX output. Regards, Yihui -- Yihui Xie xieyi...@gmail.com Phone: 515-294-2465 Web: http://yihui.name Department

Re: Question on using Lyx 2.0 with Sweave for R 2.13.0

define these converters, but I do not want to mess up with your LyX configurations. You may come back to me if you really cannot solve the problem. BTW, are you sure the bin path of R is in your PATH? try this in a command window (Start--Run; cmd): Rscript --version Regards, Yihui -- Yihui Xie

Re: Question on using Lyx 2.0 with Sweave for R 2.13.0

another Rscript.exe or Rscript.bat elsewhere. We have got too many instructions on how to configure Sweave with LyX in the past (now I kind of regret doing this). Hopefully we can get rid of all these long instructions one day. Regards, Yihui -- Yihui Xie xieyi...@gmail.com Phone: 515-294-2465 Web

Re: Sweave Snow Leopard and lyx 2.0

-- it will be copied from R if LyX cannot see it. Regards, Yihui -- Yihui Xie xieyi...@gmail.com Phone: 515-294-2465 Web: http://yihui.name Department of Statistics, Iowa State University 2215 Snedecor Hall, Ames, IA On Sun, Aug 21, 2011 at 4:58 AM, Graham Smith myotis...@gmail.com wrote: With  a follow up

Re: Sweave Snow Leopard and lyx 2.0

You are absolutely right -- too many instructions around. I wished I could make a comprehensive documentation of Sweave in LyX, but did not manage to do it before LyX 2.0.1. Perhaps we can do it in 2.0.2... Regards, Yihui -- Yihui Xie xieyi...@gmail.com Phone: 515-294-2465 Web: http://yihui.name

Re: Sweave in french with Latex

LyX 2.0 (or the latest 2.0.1) should do reasonably well in handling different languages. As the first step to diagnose your problem, could you please post the debug messages? (You can find them under the menu View--View messages) Regards, Yihui -- Yihui Xie xieyi...@gmail.com Phone: 515-294-2465

Re: Sweave in french with Latex

OK. I believe this is exactly the bug I reported at http://www.lyx.org/trac/ticket/7741 A temporary solution is to change your UI language to default instead of French (see http://www.lyx.org/trac/ticket/7741#comment:2) Regards, Yihui -- Yihui Xie xieyi...@gmail.com Phone: 515-294-2465 Web: http

Re: Does Sweave work for LyX 2.13 on Windows 7

What exactly do you mean by does not work? As a first step, can you add the Sweave module to a LyX document? Regards, Yihui -- Yihui Xie xieyi...@gmail.com Phone: 515-294-2465 Web: http://yihui.name Department of Statistics, Iowa State University 2215 Snedecor Hall, Ames, IA On Wed, Sep 21

Re: lyx2 and sweave

Isn't this another case of the bug http://www.lyx.org/trac/ticket/7741 ? Regards, Yihui -- Yihui Xie xieyi...@gmail.com Phone: 515-294-2465 Web: http://yihui.name Department of Statistics, Iowa State University 2215 Snedecor Hall, Ames, IA On Mon, Oct 3, 2011 at 9:40 AM, Jean-Marc Lasgouttes

Re: LyX2.0 and Sweave - No Output

have solved this headache that tons of users have run into in LyX 2.0.1, but currently there is no official release for Windows yet. Regards, Yihui -- Yihui Xie xieyi...@gmail.com Phone: 515-294-2465 Web: http://yihui.name Department of Statistics, Iowa State University 2215 Snedecor Hall, Ames, IA

Re: Generating paragraphs in loops

Use the chunk option results=tex, then use cat() in your R code to output the paragraphs like echo=FALSE, results=tex= for(i in 1:10) { cat('now the value of i is ', i, '\n\n') } @ Regards, Yihui -- Yihui Xie xieyi...@gmail.com Phone: 515-294-2465 Web: http://yihui.name Department

Re: Wrapping text for R commands in Sweave

set \SweaveOpts{keep.source=TRUE} to tell Sweave not to reshape your R code. 2. You need to customize sweave.module (the font size of R code is defined there). Regards, Yihui -- Yihui Xie xieyi...@gmail.com Phone: 515-294-2465 Web: http://yihui.name Department of Statistics, Iowa State University

Re: Wrapping text for R commands in Sweave

there are no carriage returns in the long lines of R code). Regards, Yihui -- Yihui Xie xieyi...@gmail.com Phone: 515-294-2465 Web: http://yihui.name Department of Statistics, Iowa State University 2215 Snedecor Hall, Ames, IA On Tue, Oct 11, 2011 at 11:17 AM, Shane Siers shanesi...@gmail.com

Re: Bold text from Sweave chunk

You have to tell us how or what on earth you cat()ed. I do not think you need R tricks (are you talking about the tricks in demo(plotmath)?). I believe something like this should work: results=tex= cat('\\textbf{abc}') @ Regards, Yihui -- Yihui Xie xieyi...@gmail.com Phone: 515-294-2465 Web

Re: LyX/Sweave on windows 7

-- Yihui Xie xieyi...@gmail.com Phone: 515-294-2465 Web: http://yihui.name Department of Statistics, Iowa State University 2215 Snedecor Hall, Ames, IA On Thu, Nov 3, 2011 at 12:25 PM, Bruce Kendall kend...@bren.ucsb.edu wrote: This is a solution rather than a question.  I am running Windows 7

Re: LyX/Sweave on windows 7

FWIW, here is the repository for the R batchfiles: http://code.google.com/p/batchfiles/ I'm not familar with Python, and I hope this could be helpful to our potential Python hackers. Regards, Yihui -- Yihui Xie xieyi...@gmail.com Phone: 515-294-2465 Web: http://yihui.name Department of Statistics

Re: 2.0.2 and sweave

We need someone to update the wiki pages (I'm quite busy these days); currently you should refer to the manual built-in with LyX (examples/sweave.lyx), and a PDF version is here: https://github.com/downloads/yihui/lyx/sweave.pdf Regards, Yihui -- Yihui Xie xieyi...@gmail.com Phone: 515-294-2465

Re: 2.0.2 and sweave

the Windows Registry Hive). Before that, users still have to modify the PATH by themselves. Or maybe it is easier to modify the preferences? Tools--Preferences--Paths--PATH prefix. I have never tried it. Regards, Yihui -- Yihui Xie xieyi...@gmail.com Phone: 515-294-2465 Web: http://yihui.name

Re: 2.0.2 and sweave

That is good to know. Thanks a lot for the experiment! I need to add this approach to the manual; it is much easier (and safer) than messing with the PATH variable directly. I often feel extremely frustrated with instructing Windows users on how to modify PATH. Regards, Yihui -- Yihui Xie xieyi

Re: Locale configuration when launching R from lyx

The correct fix, I believe, is to set the language of your interface (not document) to Default in preferences. This will at least enable R to read the Rnw document correctly. Then everything becomes a LaTeX problem (you can use other special packages, or xelatex). Regards, Yihui -- Yihui Xie

Re: Captions at top of tables

Have you read the recent manual? There is an example for creating tables in Sweave (PDF version at https://github.com/downloads/yihui/lyx/sweave.pdf; lyx source is shipped with LyX 2.0.2 and also available at https://github.com/yihui/lyx/raw/master/examples/sweave.lyx) Regards, Yihui -- Yihui Xie

Re: Compile error File does not exist: /var/folders

Which version of R are you using? Does it work when you add this to your document as TeX code (Insert--TeX Code)? \SweaveOpts{prefix=TRUE,prefix.string=sweave-figure} Regards, Yihui -- Yihui Xie xieyi...@gmail.com Phone: 515-294-2465 Web: http://yihui.name Department of Statistics, Iowa State

Re: Compile error File does not exist: /var/folders

This sounds hard to diagnose... Does that file really exist or not? Can you go and check in that folder? Regards, Yihui -- Yihui Xie xieyi...@gmail.com Phone: 515-294-2465 Web: http://yihui.name Department of Statistics, Iowa State University 2215 Snedecor Hall, Ames, IA On Wed, Feb 8, 2012

Re: Compile error File does not exist: /var/folders

OK, then the question is where is this file. Can you try to compile the document again, and search for that R-GettingStarted.pdf? Regards, Yihui -- Yihui Xie xieyi...@gmail.com Phone: 515-294-2465 Web: http://yihui.name Department of Statistics, Iowa State University 2215 Snedecor Hall, Ames, IA

Re: Compile error File does not exist: /var/folders

the Sweave module in LyX? What are the first few lines of messages when you compile the document? (View--View Messages) Regards, Yihui -- Yihui Xie xieyi...@gmail.com Phone: 515-294-2465 Web: http://yihui.name Department of Statistics, Iowa State University 2215 Snedecor Hall, Ames, IA On Wed, Feb 8

Re: Compile error File does not exist: /var/folders

Can you also attach a copy of the script /Applications/LyX.app/Contents/Resources/scripts/lyxsweave.R ? Regards, Yihui -- Yihui Xie xieyi...@gmail.com Phone: 515-294-2465 Web: http://yihui.name Department of Statistics, Iowa State University 2215 Snedecor Hall, Ames, IA On Wed, Feb 8, 2012

Re: Compile error File does not exist: /var/folders

Yes, this sounds like a problem specific to a particular file (then it will be even harder for me to diagnose). Does that one produce figures from R? Regards, Yihui -- Yihui Xie xieyi...@gmail.com Phone: 515-294-2465 Web: http://yihui.name Department of Statistics, Iowa State University 2215

Re: Why do YOU love LyX?

Yes, that is it!! Regards, Yihui -- Yihui Xie xieyi...@gmail.com Phone: 515-294-2465 Web: http://yihui.name Department of Statistics, Iowa State University 2215 Snedecor Hall, Ames, IA On Sat, Feb 18, 2012 at 6:31 AM, Christopher Menzel cmen...@tamu.edu wrote: Am Feb 18, 2012 um 12:28 PM

Re: Recommended third-party tools

by executing code (R code in this case). Just my 2 cents. Regards, Yihui -- Yihui Xie xieyi...@gmail.com Phone: 515-294-2465 Web: http://yihui.name Department of Statistics, Iowa State University 2215 Snedecor Hall, Ames, IA

Re: Free software writing appliance -- email clients

Yes, LyX + R is really powerful. I have been thinking of making a video on this topic, but have not got time so far. BTW, I just noticed someone had updated the wiki page about Sweave to reflect changes in LyX 2.0. I really appreciate it. Regards, Yihui -- Yihui Xie xieyi...@gmail.com Phone: 515

Re: Recommended third-party tools

Liviu, This is really great news! I've been longing for such a PPA. Thanks! Regards, Yihui -- Yihui Xie xieyi...@gmail.com Phone: 515-294-2465 Web: http://yihui.name Department of Statistics, Iowa State University 2215 Snedecor Hall, Ames, IA On Sun, Feb 19, 2012 at 12:48 PM, Liviu Andronic

Re: Recommended third-party tools

, highlighting, caching, fine control of graphics, conditional evaluation, multiple markup formats and other features. div class=vspace//dd Regards, Yihui -- Yihui Xie xieyi...@gmail.com Phone: 515-294-2465 Web: http://yihui.name Department of Statistics, Iowa State University 2215 Snedecor Hall, Ames, IA

Re: need working example of copier to customize pdf output

on demand, instead of each time you export PDF from LyX. Or if you like point-and-click, you can make a pdfnup22.sh in your directory and change its mode to be executable; then each time you want to convert the slides, just click it and you are done. Regards, Yihui -- Yihui Xie xieyi...@gmail.com Phone

Re: Sweave Snow Leopard and lyx 2.0

I think LyX 2.0.3 looks good now. The Sweave manual is accessible via Help=Specific Manuals. The LyX wiki has been updated as well. Regards, Yihui -- Yihui Xie xieyi...@gmail.com Phone: 515-294-2465 Web: http://yihui.name Department of Statistics, Iowa State University 2215 Snedecor Hall, Ames

Re: Sweave Snow Leopard and lyx 2.0

That is right. It is one thing in LyX that I most wanted to do, and I was quite happy that it was accepted. I no longer have to tell other users to use dark voodoos. Regards, Yihui -- Yihui Xie xieyi...@gmail.com Phone: 515-294-2465 Web: http://yihui.name Department of Statistics, Iowa State

Re: play sound when (lengthy) compilation finishes?

Or add a last code chunk in Sweave: done,echo=FALSE= alarm() # equivalent to cat('\a') @ or use the twitteR pacakge to send yourself a twitter message when it is done... Regards, Yihui -- Yihui Xie xieyi...@gmail.com Phone: 515-294-2465 Web: http://yihui.name Department of Statistics, Iowa

Re: Error with Lyx 2.0.3 and Knitr

Please see https://github.com/downloads/yihui/lyx/sweave.pdf for how to diagnose the problem. We need more detailed information. Regards, Yihui -- Yihui Xie xieyi...@gmail.com Phone: 515-294-2465 Web: http://yihui.name Department of Statistics, Iowa State University 2215 Snedecor Hall, Ames, IA

Re: LyX cannot handle '$' sign in Sweave code chunk

Please read the manual https://github.com/downloads/yihui/lyx/sweave.pdf to help you diagnose the problem; you should see the R error in the LyX messages. Regards, Yihui -- Yihui Xie xieyi...@gmail.com Phone: 515-294-2465 Web: http://yihui.name Department of Statistics, Iowa State University 2215

Re: knitr problem with packageVersion R function

I cannot reproduce the problem. It compiles successfully with TeXLive 2011 under Ubuntu. Can anyone else reproduce it? Does this happen to packageVersion() only? Regards, Yihui -- Yihui Xie xieyi...@gmail.com Phone: 515-294-2465 Web: http://yihui.name Department of Statistics, Iowa State

Re: knitr problem with packageVersion R function

function (x, ...) { y - as.character(x) if (!length(y)) writeLines(gettext(0 elements)) else print(noquote(ifelse(is.na(y), NA_character_, sQuote(y))), ...) invisible(x) } bytecode: 0x1a26bf8 environment: namespace:base Regards, Yihui -- Yihui Xie xieyi

Re: Compiling pdf sometimes stops when child document has a different textclass

I do not know what exactly is the problem here, but one thing that might help a little bit is to update knitr to the latest version if you have not done so. Since v0.5, the tikz-to-pdf compilation will no longer hang forever. Regards, Yihui -- Yihui Xie xieyi...@gmail.com Phone: 515-294-2465 Web

Re: Using sweave/knitr in master and child documents

cannot be shared between them because they are in different workspaces. Regards, Yihui -- Yihui Xie xieyi...@gmail.com Phone: 515-294-2465 Web: http://yihui.name Department of Statistics, Iowa State University 2215 Snedecor Hall, Ames, IA On Mon, Jul 16, 2012 at 7:43 AM, obregonma...@gmail.com wrote

Re: Knitr chunks, how to insert them?

of the manuals above :) Regards, Yihui -- Yihui Xie xieyi...@gmail.com Phone: 515-294-2465 Web: http://yihui.name Department of Statistics, Iowa State University 2215 Snedecor Hall, Ames, IA On Mon, Jul 16, 2012 at 8:01 PM, Murat Yildizoglu myi...@gmail.com wrote: Hello, I am starting to test Knitr

Re: Knitr chunks, how to insert them?

, is: install.packages( 'tikzDevice', repos='http://r-forge.r-project.org' ) Regards, Yihui -- Yihui Xie xieyi...@gmail.com Phone: 515-294-2465 Web: http://yihui.name Department of Statistics, Iowa State University 2215 Snedecor Hall, Ames, IA On Tue, Jul 17, 2012 at 5:07 PM, Murat Yildizoglu myi...@gmail.com wrote

Re: Knitr chunks, how to insert them?

You are right. It will come back eventually. Regards, Yihui -- Yihui Xie xieyi...@gmail.com Phone: 515-294-2465 Web: http://yihui.name Department of Statistics, Iowa State University 2215 Snedecor Hall, Ames, IA On Tue, Jul 17, 2012 at 5:42 PM, Murat Yildizoglu myi...@gmail.com wrote: Ok

Re: Using sweave/knitr in master and child documents

If that is the case, yes, you can use child documents. 2.0.x has significant improvements over 1.6.x in terms of Sweave/knitr support, so I strongly recommend you to upgrade. Regards, Yihui -- Yihui Xie xieyi...@gmail.com Phone: 515-294-2465 Web: http://yihui.name Department of Statistics, Iowa

Re: Sweave documents fail to compile under 2.03

Please read section 4 of the manual and report more information: https://github.com/downloads/yihui/lyx/sweave.pdf otherwise it is hard to know what is exactly is the failure. Regards, Yihui -- Yihui Xie xieyi...@gmail.com Phone: 515-294-2465 Web: http://yihui.name Department of Statistics, Iowa

Re: Sweave documents fail to compile under 2.03

of just showing the very vague message An error occured while running Rscript --verbose...? R errors are written to stderr, so in theory it should be possible. Thanks! Regards, Yihui -- Yihui Xie xieyi...@gmail.com Phone: 515-294-2465 Web: http://yihui.name Department of Statistics, Iowa State University

Re: Sweave documents fail to compile under 2.03

it is difficult for me to reproduce the problem. Regards, Yihui -- Yihui Xie xieyi...@gmail.com Phone: 515-294-2465 Web: http://yihui.name Department of Statistics, Iowa State University 2215 Snedecor Hall, Ames, IA On Thu, Jul 26, 2012 at 10:40 AM, Hobbs,Tom tom.ho...@colostate.edu wrote: Sorry--I

How to remove the path prefix before image files?

E:/user/document/). My question is, how to let Lyx copy the file without changing its name? Thanks! Regards, Yihui -- Yihui Xie xieyi...@gmail.com Phone: 515-294-6609 Web: http://yihui.name Department of Statistics, Iowa State University 3211 Snedecor Hall, Ames, IA

Re: How to remove the path prefix before image files?

produced by the code. Regards, Yihui On Tue, Dec 8, 2009 at 6:57 PM, Vincent van Ravesteijn v.f.vanraveste...@tudelft.nl wrote: Yihui Xie schreef: Hi, When we insert a graph into a Lyx document, say, test.pdf, and compile the lyx document using pdfLaTeX, Lyx will first copy the graph

Re: knitr (Rnw) module: \Sexpr in Inline Math

sees 0.5^{2 because } terminates the code. Regards, Yihui -- Yihui Xie xieyi...@gmail.com Phone: 515-294-2465 Web: http://yihui.name Department of Statistics, Iowa State University 2215 Snedecor Hall, Ames, IA On Thu, Aug 16, 2012 at 2:33 PM, Michael Bach pha...@gmail.com wrote: On 8/16/2012 9

Re: wiki upload issues

the problem, but of course, the external file host has to be reliable... Regards, Yihui -- Yihui Xie xieyi...@gmail.com Phone: 515-294-2465 Web: http://yihui.name Department of Statistics, Iowa State University 2215 Snedecor Hall, Ames, IA On Mon, Sep 24, 2012 at 4:20 PM, Liviu Andronic landronim

Re: Knitr (Rnw) Rscript error log

The first place to look at is View--View Messages, as described in the troubleshooting section in Sweave manual (which applies to knitr as well): https://github.com/downloads/yihui/lyx/sweave.pdf Regards, Yihui -- Yihui Xie xieyi...@gmail.com Phone: 515-294-2465 Web: http://yihui.name Department

Re: Knitr (Rnw) Rscript error log

with. Regards, Yihui -- Yihui Xie xieyi...@gmail.com Phone: 515-294-2465 Web: http://yihui.name Department of Statistics, Iowa State University 2215 Snedecor Hall, Ames, IA On Sat, Sep 29, 2012 at 10:52 AM, Michael Bach pha...@gmail.com wrote: Just a quick follow-up. I gather from the log that R reads

Re: Knitr (Rnw) Rscript error log

/tvnzczfx7c31c68jrddvlqgrgn/T/lyx_tmpdir.xJL523/lyx_tmpbuf3/tex UTF-8 /Users/XYZ/Documents/... I think that is Mac OS, although in the first email it was Windows 7. Regards, Yihui -- Yihui Xie xieyi...@gmail.com Phone: 515-294-2465 Web: http://yihui.name Department of Statistics, Iowa State

Re: Knitr (Rnw) Rscript error log

You can make a copy of that document, delete everything in it, and only put a code chunk = sessionInfo() @ there and compile it. Then show us the results from sessionInfo(). Regards, Yihui -- Yihui Xie xieyi...@gmail.com Phone: 515-294-2465 Web: http://yihui.name Department of Statistics, Iowa

Re: Knitr (Rnw) Rscript error log

for LyX 2.0.5 for the bug fix. Regards, Yihui -- Yihui Xie xieyi...@gmail.com Phone: 515-294-2465 Web: http://yihui.name Department of Statistics, Iowa State University 2215 Snedecor Hall, Ames, IA On Sun, Sep 30, 2012 at 5:06 PM, Michael Bach pha...@gmail.com wrote: On 9/30/12 10:51 PM, Yihui Xie

Re: Knitr (Rnw) Rscript error log

That is something confused me as well. Here is a screenshot of what I was talking about: http://i.imgur.com/vkLhP.png It only sets the language of the GUI and will not affect the document itself. Regards, Yihui -- Yihui Xie xieyi...@gmail.com Phone: 515-294-2465 Web: http://yihui.name Department

Re: Lyx vs Kile

){0,2}sections, or \includegraphics{}. Everything is so clear. Regards, Yihui -- Yihui Xie xieyi...@gmail.com Phone: 515-294-2465 Web: http://yihui.name Department of Statistics, Iowa State University 2215 Snedecor Hall, Ames, IA On Mon, Nov 5, 2012 at 1:29 PM, VA cuyfa...@hotmail.com wrote: I use

Re: Having a problem including an AT, '@', in my output (Document module = Sweave)

Could you attach a minimal real *.lyx file? I do not understand what pseudo-html markup means. Regards, Yihui -- Yihui Xie xieyi...@gmail.com Phone: 515-294-2465 Web: http://yihui.name Department of Statistics, Iowa State University 2215 Snedecor Hall, Ames, IA On Mon, Nov 12, 2012 at 7:26 PM

Re: Having a problem including an AT, '@', in my output (Document module = Sweave)

. To verify this, you can try the knitr module after install.packages('knitr') in R, and @ will be there as expected. In case you are not aware of it, knitr is an alternative to Sweave (and I'm shamelessly advertising here). Regards, Yihui -- Yihui Xie xieyi...@gmail.com Phone: 515-294-2465 Web: http

Input an Sweave/knitr chunk via command sequence

as RStudio). Then we will be able to input this quickly: = # cursor moved here automatically @ Regards, Yihui -- Yihui Xie xieyi...@gmail.com Phone: 515-294-2465 Web: http://yihui.name Department of Statistics, Iowa State University 2215 Snedecor Hall, Ames, IA

Re: Input an Sweave/knitr chunk via command sequence

Thanks, I'll keep that in mind. Regards, Yihui -- Yihui Xie xieyi...@gmail.com Phone: 515-294-2465 Web: http://yihui.name Department of Statistics, Iowa State University 2215 Snedecor Hall, Ames, IA On Tue, Nov 27, 2012 at 12:21 PM, Scott Kostyshak skost...@lyx.org wrote: On Tue, Nov 27, 2012

Re: Problems with dcolumn package

I'm sorry but what exactly was the problem? I can compile it without any problems in LyX, and here is a screenshot: http://imgur.com/bX7I7 Regards, Yihui -- Yihui Xie xieyi...@gmail.com Phone: 515-294-2465 Web: http://yihui.name Department of Statistics, Iowa State University 2215 Snedecor Hall

Re: Problems with dcolumn package

bug #7741: http://www.lyx.org/announce/2_0_5.txt http://www.lyx.org/trac/ticket/7741 Regards, Yihui -- Yihui Xie xieyi...@gmail.com Phone: 515-294-2465 Web: http://yihui.name Department of Statistics, Iowa State University 2215 Snedecor Hall, Ames, IA On Mon, Dec 17, 2012 at 3:56 AM, José Luis

Re: kitr problem after R update.

https://raw.github.com/yihui/lyx/master/scripts/lyxknitr.R and put it under ~/lyx/scripts/. After LyX 2.0.6 is out, you will not need it. Regards, Yihui -- Yihui Xie xieyi...@gmail.com Phone: 515-294-2465 Web: http://yihui.name Department of Statistics, Iowa State University 2215 Snedecor Hall, Ames

Re: kitr problem after R update.

You cannot use cm directly; you have to convert cm to in which should be trivial: 1in = 2.54cm. Regards, Yihui -- Yihui Xie xieyi...@gmail.com Phone: 515-294-2465 Web: http://yihui.name Department of Statistics, Iowa State University 2215 Snedecor Hall, Ames, IA On Sun, Feb 17, 2013 at 11:53 AM

Re: Working with Lyx and Sweave; pasting R-code from Emacs into Lyx seems awkward. Any suggestions?

and LyX if you use the knitr module instead of Sweave. See http://yihui.name/knitr/demo/externalization/ for examples, and http://yihui.name/knitr/demo/lyx/ for a video demo of knitr in LyX. Regards, Yihui -- Yihui Xie xieyi...@gmail.com Phone: 515-294-2465 Web: http://yihui.name Department

Re: Working with Lyx and Sweave; pasting R-code from Emacs into Lyx seems awkward. Any suggestions?

My suggestion is always ERT for R code chunks, because it is clean and easier to play with program code. Regards, Yihui -- Yihui Xie xieyi...@gmail.com Phone: 515-294-2465 Web: http://yihui.name Department of Statistics, Iowa State University 2215 Snedecor Hall, Ames, IA On Sun, Apr 14, 2013

Re: Problem using R's table package with knitr.

Did you \usepackage{booktabs} in the preamble? That is what ?tables::booktabs says. Regards, Yihui -- Yihui Xie xieyi...@gmail.com Phone: 515-294-2465 Web: http://yihui.name Department of Statistics, Iowa State University 2215 Snedecor Hall, Ames, IA On Mon, Jun 3, 2013 at 3:07 PM, John Kane

Re: Problem using R's table package with knitr.

-- Yihui Xie xieyi...@gmail.com Phone: 515-294-2465 Web: http://yihui.name Department of Statistics, Iowa State University 2215 Snedecor Hall, Ames, IA On Mon, Jun 3, 2013 at 1:38 PM, John Kane jrkrid...@yahoo.ca wrote: From: Yihui Xie x...@yihui.name To: John

Re: Problem using R's table package with knitr.

But John needs the LaTeX table output in the next line of R code; include=FALSE will exclude everything in that chunk. Moving booktabs() to the previous chunk and using include=FALSE there will be fine. Regards, Yihui -- Yihui Xie xieyi...@gmail.com Phone: 515-294-2465 Web: http://yihui.name

Re: Problem using R's table package with knitr.

That is right. Regards, Yihui -- Yihui Xie xieyi...@gmail.com Phone: 515-294-2465 Web: http://yihui.name Department of Statistics, Iowa State University 2215 Snedecor Hall, Ames, IA On Tue, Jun 4, 2013 at 8:49 AM, Liviu Andronic landronim...@gmail.com wrote: On Tue, Jun 4, 2013 at 5:33 PM

Re: make graphic insert 100% textwidth default

One way to do that is to redefine \includegraphics (cf https://github.com/jgm/pandoc-templates/blob/master/default.latex). Regards, Yihui -- Yihui Xie xieyi...@gmail.com Phone: 206-667-4385 Web: http://yihui.name Fred Hutchinson Cancer Research Center, Seattle On Wed, Jul 31, 2013 at 12:23 PM

Re: error in LyX with Turkish language using knitr

and also your session info in R: library(knitr) sessionInfo() system('pdflatex --version') Regards, Yihui -- Yihui Xie xieyi...@gmail.com Web: http://yihui.name Department of Statistics, Iowa State University 2215 Snedecor Hall, Ames, IA On Thu, Aug 29, 2013 at 4:34 PM, Scott Kostyshak skost

Re: error in LyX with Turkish language using knitr

--Language package--None. Without babel, it compiles fine. Regards, Yihui -- Yihui Xie xieyi...@gmail.com Web: http://yihui.name Department of Statistics, Iowa State University 2215 Snedecor Hall, Ames, IA On Fri, Aug 30, 2013 at 2:07 AM, Kizilkaya, Kadir [AN S] kad...@iastate.edu wrote: Hi Scott, I

Re: Problems with custom modules after upgrade to 2.1.0

can catch the stderr output when R fails and display the error message in the dialog. The default error message An error occurred while running is not informative. Regards, Yihui -- Yihui Xie xieyi...@gmail.com Web: http://yihui.name On Tue, Apr 22, 2014 at 12:50 PM, John Kane jrkrid...@yahoo.ca

Re: Problems with custom modules after upgrade to 2.1.0

Yes, please. Thanks! Regards, Yihui -- Yihui Xie xieyi...@gmail.com Web: http://yihui.name On Tue, Apr 22, 2014 at 4:31 PM, Scott Kostyshak skost...@lyx.org wrote: On Tue, Apr 22, 2014 at 5:30 PM, Scott Kostyshak skost...@lyx.org wrote: On Tue, Apr 22, 2014 at 3:44 PM, Yihui Xie x

Re: WORKAROUND and BUG: Yosemite + LyX

apply to all of them. Regards, Yihui -- Yihui Xie xieyi...@gmail.com Web: http://yihui.name On Wed, Oct 22, 2014 at 4:06 AM, Rainer M Krug rai...@krugs.de wrote: THis seems to be a problem with paths and environmental variables passed to sub-processes (also mentiond on the R sig mac list

Re: WORKAROUND and BUG: Yosemite + LyX

I do not use Mac OS X very often (I use it mostly for testing purposes), so personally I do not care. It is easy to ditch Apple by myself, but not all Apple users :( (Same thing for Windows) Regards, Yihui -- Yihui Xie xieyi...@gmail.com Web: http://yihui.name On Wed, Oct 22, 2014 at 11:47 AM

How to copy required files into the temporary directory?

Hi all, I'm using a LaTeX package that will include certain files into the document, however, Lyx does not know these files are required for compiling, because they are not included with standard LaTeX macros (e.g. \includegraphics{}). So my question is, how to copy these files into the temporary

Re: How to copy required files into the temporary directory?

Thanks! Yes the file name is annoying. What's more, Lyx will use a different temp directory each time, so it's difficult to copy the files to the temp directory by hand, as I don't know the destination. Regards, Yihui -- Yihui Xie xieyi...@gmail.com Phone: 515-294-6609 Web: http://yihui.name

Re: How to copy required files into the temporary directory?

-294-6609 Web: http://yihui.name Department of Statistics, Iowa State University 3211 Snedecor Hall, Ames, IA On Wed, Sep 16, 2009 at 10:10 AM, rgheck rgh...@bobjweil.com wrote: On 09/16/2009 12:36 AM, Yihui Xie wrote: Thanks! Yes the file name is annoying. What's more, Lyx will use a different

Re: Weird space in Unicode (utf8)

It is a known issue without a fix yet: http://comments.gmane.org/gmane.editors.lyx.devel/145465 Regards, Yihui -- Yihui Xie xieyi...@gmail.com Web: http://yihui.name On Fri, Jan 16, 2015 at 10:27 AM, Xin Wu wuxin.xid...@gmail.com wrote: Hi, all, I am using LyX 2.1.2.2 on Macbook pro

Re: Weird space in Unicode (utf8)

-- Yihui Xie xieyi...@gmail.com Web: http://yihui.name On Fri, Jan 16, 2015 at 11:59 AM, Liviu Andronic landronim...@gmail.com wrote: On Fri, Jan 16, 2015 at 5:38 PM, Yihui Xie x...@yihui.name wrote: It is a known issue without a fix yet: http://comments.gmane.org/gmane.editors.lyx.devel/145465

Re: Error in Lyx Sweave (Noweb)

\Resources\examples). Sweave no longer depends on specific layouts. This is a significant change in LyX 2.0. Regards, Yihui -- Yihui Xie xieyi...@gmail.com Phone: 515-294-2465 Web: http://yihui.name Department of Statistics, Iowa State University 2215 Snedecor Hall, Ames, IA On Thu, May 12, 2011

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