distance of each group?
I will use the Mahalanobis distance for the minimum spanning tree and
dendogram to compare the minimum spanning tree and dendogram of the
original sample size?
Thank you very much.
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Hello! I would like to ask for help as I use the book of Dryden and Mardia,
"Statistical Shape Analysis with Application in R"? I cannot find where in
the book (or maybe I just overlooked), how did he plot the mean shapes in
Figure 8.4. Thank you very much.
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appreciated. Thank you very much.
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I note that we recently have achieved 1000 subscribers to morphmet!
Caveat 1: Over the years, some have removed themselves from the list or
asked me to remove them. So, there have actually been more than 1000 people
subscribing, but we have never had 1000 subscribers on the list at the same
to try to see what is going on. For now, I have
no idea if your individual posts to the list (including this one -
fourth attempt) will appear.
In the meantime, please be patient.
-the moderator
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and dissertations
based on this method once we knew how bad it was. His biorxiv upload and
his announcement of it on morphmet were not a surprise to us. There were
emails exchanged about the need to warn users. At the time, Fred told me
that he needed to go ahead with the biorxiv upload
uite different
from mine. This fragment, particularly its style of simulating and
reporting, may have served later as the basis of the second of the two
papers as I referred to it both in my Monday morphmet posting and in my
biorxiv preprint. (I say "may have" because I have n
627448v1
For those of you who were at the March meeting, this is the argument
(complete with formulas) defending my stern condemnation there. I won't try
to summarize it in this morphmet note -- if you're interested, just read
the abstract on page 1 of the link. For those of you who have already
141.0176474.3985
90.9274 140.2106477.6371
85.2512 140.7932478.2403
I would apreciate if somebody could help me.
Please don't hesitate to ask me for more details.
King regards
Azadeh
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-ds [the MORPHMET moderator]
On Tuesday, April 30, 2019 at 11:01:15 AM UTC-4, MORPHMET wrote:
>
> [Posted on behalf of Dr. Bookstein]
>
> Dear MorphMetters,
>
> I'm happy to announce that my paper "Reflections on a Biometrics of
>
urces and the
rhetoric of biological explanations of organismal form both over evolution
and over development.
As always I welcome all comments on these ideas, enthusiastic or otherwise.
Fred Bookstein
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r findings for which the Rohlf
Medal was awarded.
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1335,0
797,0 1429,0
559,0 1477,0
679,0 1503,0
391,0 1217,0
485,0 1093,0
533,0 914,0
880,0 809,0
849,0 715,0
707,0 802,0
496,0 632,0
IMAGE=3572.jpg
ID=0
The option "tps" was chosen. What can be wrong?
-
-00014 FINLAND
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14 FINLAND
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Hello!
Has anyone ever used 3D data to make a video showing the shape changes in
human skull evolution? For example warping from a chimpanzee to modern
human? I think it would be great to have a movie like this to use when
teaching human evolution.
Thanks!
Abby
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d
> on the abiotic factors of the places the plants live in.
>
> I'll be so thankful for any guide that you can provide me.
>
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any others as well.
Fred Bookstein
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a, Y., & Klingenberg, C. P. (2011). Beyond bilateral symmetry:
geometric morphometric methods for any type of symmetry. *BMC evolutionary
biology*, *11*(1), 280.
Best wishes!
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/10.1101/310789
Best wishes,
Yoland Savriama
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6712; doi: https://doi.org/10.1101/306712
Best wishes,
Yoland Savriama
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Faculty of Natural Sciences and Mathematics
Koroška cesta 160, 2000 Maribor, Slovenija
T: +386 41 808 366
E: tina.klenov...@um.si<mailto:ime.prii...@um.si>,
www.fnm.um.si<http://www.fnm.uni-mb.si>
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and
species.
In which user friendly program (like MorphoJ ☺) can I analyse outline data and
visualize variability?
Thank you again,
Tina
From: Joanna Lenarczyk [mailto:j.kowal...@botany.pl]
Sent: Thursday, March 15, 2018 10:21 AM
To: Tina Klenovšek
Subject: Re: [MORPHMET] digitizing very variable leaves
: Wednesday, March 14, 2018 3:59 AM
To: Tina Klenovšek
Subject: Re: [MORPHMET] digitizing very variable leaves
An assumption of the usual GMM methods is that shape variation is "small". I
think these leaves exceed this quite a bit! Another problem is landmarks. How
to match leaves with a
:10.1038/s41467-017-02788-3
Best wishes,
Yoland Savriama
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150x, would work for you.
Best of luck!
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rter gene, FgANS in
symmetry of flowers.
Best wishes!
Yoland Savriama
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. 2010 Mar
25;464(7288):583-6.
8. Interested candidates should check our group webpage:
http://www.biocenter.helsinki.fi/salazar/index.html
The center of Excellence webpage:
http://www.biocenter.helsinki.fi/bi/evodevo/ECDev.html
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g discussion emphasizes the
desirability of superseding PCA by algorithms aimed at anthropological
understanding rather than classification or ordination.
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al-of-mammalogy.it/public/journals/3/issue_241_complete_100.pdf
ESTIMATE YOUR GLOBAL FOOTPRINT:
http://www.footprintnetwork.org/en/index.php/GFN/page/calculators/
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!
gabe wrobel
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at the time.
>
> Can anyone help?
>
> Cheers
> Bill
> --
> Bill Sellers, Tel: 01612751719, Mobile: 07857655786,
> http://www.animalsimulation.org
> University of Manchester, D1239 Michael Smith Building, Manchester, M13
> 9PT.
>
> --
> MORPHMET may be accesse
, Slovenija
T: (00 386) 041 808 366
E: tina.klenov...@um.si<mailto:tina.klenov...@um.si>,
www.fnm.um.si<http://www.fnm.uni-mb.si/>
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Dear all,
I am advertising a 2-year post-doctorial fellowship focused on artefact
morphometrics (lithics). Those interested, please have a look here
http://www.au.dk/om/stillinger/videnskabelige-stillinger/stillinger/Vacancy/show/852090/5285/;
feel free to share.
Yours,
Felix
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I would like to freshen up the online resource links on the
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Thanks, the MORPHMET Management
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ad decimal character in
coordinates?.'
I get the same error for tps files with and without removed control lines.
I hope someone has an idea why this Problem shows up and can help me.
Thanks
Jan
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or send me your objections. Yours from Vienna
with best wishes, Fred Bookstein
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It is never too Darwin':
Project therio.it <http://therio.it> : https://dibt.unimol.it/therio/
Assistan Editor Italian Journal of Zoology
http://www.tandfonline.com/toc/tizo20/current#.Uuv5YfjANf9
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If a response is impo
Journal of Zoology
http://www.tandfonline.com/toc/tizo20/current#.Uuv5YfjANf9
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You received this message because you are subscribed to the
Sitting in the Atlanta airport on my way back from the third Rohlf Medal
award ceremony, and I just approved the 750th subscriber to the list.
Congratulations to HS in Alaska who wins a free subscription to MORPHMET.
:)
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The deadline approaches: July 15, 2015! Time to get your applications in.
On Monday, March 9, 2015 at 8:24:10 AM UTC-4, MORPHMET wrote:
*2015 CALL FOR NOMINATIONS*
*The Rohlf Medal*
The Rohlf Medal was established in 2006 by the family and friends of F.
James Rohlf to mark his 70th
Spezielle Zoologie und Evolutionsbiologie
mit Phyletischem Museum
Friedrich-Schiller-Universität Jena
Germany
This message was sent through https://webmail.uni-jena.de
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A friendly reminder to start getting your nominations packages together.
On Monday, March 9, 2015 at 1:24:10 PM UTC+1, MORPHMET wrote:
*2015 CALL FOR NOMINATIONS*
*The Rohlf Medal*
The Rohlf Medal was established in 2006 by the family and friends of F.
James Rohlf to mark his 70th
coordinates
differ from the imported one, except for the first specimen.*
*
*
May I know why does this happen? Will this affect subsequent analyses?
Your kind reply is highly appreciated!
Best regards,
Patrick
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To unsubscribe
that comes up on offer.
The title is what it is because there is an immediate application to
integration studies in GMM whereby the Procrustes model must be replaced by
something different as the null model for such studies.
With best wishes, Fred Bookstein
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/44993.html
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or he will
deliver a lecture that is appropriate for a broad audience, ranging from
the exact sciences to the humanities, concerning the morphometric
methodology, software, or findings for which the Rohlf Medal was awarded
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...@dbe.uns.ac.rs
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I have just sent out the final re-re-...invitations to addresses on the old
MORPHMET mailing list. When these expire, they addresses will be deleted,
and anyone wanting to join will have to do so using the standard procedure.
At this writing, we have 640 subscribers, which is pretty impressive
and the
names of at least two referees should be sent as a single PDF document
to Dr Kornelius Kupczik (kupczik (AT) eva (DOT) mpg (DOT) de). For further
information
about the Max Planck Weizmann Center see http://www.eva.mpg.de/mpwc.
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PhD Student
Université de Perpignan Via Domitia, ED 544, UR MEDI-TERRA
Centre Européen de Recherche Préhistorique de Tautavel, UMR CNRS 7194
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EPCC - CERPT
Avenue Léon-Jean Grégory
66720
Tautavel
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Yesterday, the website and MORPHMET went down. The reason was that I asked
to cancel account with the original (more expensive) service provider. When
they did this, it wiped out something called the Zone File. I spent a
significant part of today getting that restored. I think it works, now
Delight has been achieved!
I am delighted to report that membership in the new MORPHMET has surpassed
the 600 subscriber mark - 603 as of this writing. Also,
www.morphometrics.org has rec'd nearly 400 unique (by IP) visits from
computers in 45 countries (see embedded map on the website).
We
Satisfaction obtained - currently at exactly 500 subscribers.
Now, anticipating delight...600
The Management
On Saturday, August 16, 2014 10:34:42 AM UTC-4, MORPHMET wrote:
Hi, Folks. This is just an update on the ongoing migration to the new
system.
First, I am pleased to note that we
Please be aware that you DO NOT have to have a gmail account to subscribe
to the list. That is only necessary if you want to use the web interface.
You can request to join the list from any email address (as far as I know)
by sending a message to:
morphmet+subscr...@morphometrics.org
, you must be logged in via a Google account. If
you do not have one (and are subscribed), you may post to the list by
sending an email to morphmet@morphometrics.org or replying (to the list) to
postings appearing in your email account. Users are initially set up to
receive real-time email
I am pleased to announce that the new MORPHMET is open for business. Usage
notes follow.
1) Anyone can view the list's content, but only subscribers can post.
2) moderation - Initial posts from all users will be moderated. When your
first post is approved, moderation will be turned off. All
I have been making progress preparing the migration to the new system,
but not quite there, yet. I hope to have this done by or over the weekend.
I am writing this to let you know that when MORPHMET does come back up,
you will receive an invitation to join the new list (actually just the
old
Original Message
Subject:Re: Slicer question
Date: Mon, 28 Jul 2014 21:16:07 -0400
From: m...@uw.edu
To: morphmet@morphometrics.org morphmet@morphometrics.org
Hi Donna,
We use it daily, what would you like to know?
*From:* morphmet_modera
It is my intention to take morphmet down shortly (today?). I believe I
have cleared all pending postings and subscription requests.
If all goes well, it should be down for a few hours or a couple of days.
Most likely the latter to give me a chance to test the new system.
If all goes well
Original Message
Subject: Re: Image rotation data loss
Date: Sun, 29 Jun 2014 03:38:32 -0400
From: Dennis E. Slice dsl...@morphometrics.org
To: morphmet@morphometrics.org
First guess would be your landmarks are out of order on one or more
specimens. You can check
Sorry for jumping the queue, but...
Over time, we have had a number of problems with message distribution on
MORPHMET. The fundamental issue is that when multiple messages are
distributed the host sometimes shuts down the list thinking it is spam.
We believe the problem ultimately arises from
Original Message
Subject:RE: bilat.symmetry output in geomorph
Date: Sun, 14 Jul 2013 18:30:13 -0400
From: Adams, Dean [EEOBS] dcad...@iastate.edu
To: morphmet@morphometrics.org morphmet@morphometrics.org
CC: Dean Adams (dcad...@iastate.edu) dcad
Dear Morphmeters, I may sent out some duplicate messages from the past
few days - some seemed familiar, though not in my personal archive. If
so, I apologize. -the morphmet mod (dslice)
Thought I would post an update.
On one system running Apple OS X 10.8.4, I uninstalled Apple Java 1.6(1)
and installed Oracle Java 1.7(2).
Morpheus runs just fine in this environment, and there is no need to run
the mac_os_x_prepare script.
jEdit(3) is still partially broken, but looking
Original Message
Subject: RE: tps format problem reading in R
Date: Wed, 3 Jul 2013 11:32:55 -0400
From: Adams, Dean [EEOBS] dcad...@iastate.edu
To: morphmet@morphometrics.org morphmet@morphometrics.org
Hi John,
There were two issues here, and both of which have easy fixes
[Added to the Announcements page at www.morphometrics.org -the morphmet
moderator (dslice)]
Remembrances of Robert Sokal
Save the date: Sunday November 18, 2-4 P.M., Wang Center Chapel at Stony
Brook University
Robert Sokal passed away last April and his funeral and memorial service
were
Original Message
Subject: RE: multi-class ANOVA analogue for geometric morphometrics
Date: Mon, 4 Jun 2012 14:59:23 -0400
From: F. James Rohlf ro...@life.bio.sunysb.edu
Reply-To: ro...@life.bio.sunysb.edu
Organization: Stony Brook University
To: morphmet@morphometrics.org
Original Message
Subject:RE: CV shape variation
Date: Mon, 4 Jun 2012 15:05:53 -0400
From: F. James Rohlf ro...@life.bio.sunysb.edu
Reply-To: ro...@life.bio.sunysb.edu
Organization: Stony Brook University
To: morphmet@morphometrics.org
I am not sure
Original Message
Subject: PhD in morphological evolution
Date: Wed, 23 May 2012 05:35:58 -0400
From: coue...@mnhn.fr
To: morphmet@morphometrics.org
Hello,
You'll find below a PhD subject proposed to the Ecole Pratique des
Hautes Etudes (France)
The subject (and ONE applicant
Original Message
Subject:tpsUtil update
Date: Wed, 23 May 2012 21:46:50 -0400
From: F. James Rohlf ro...@life.bio.sunysb.edu
Reply-To: ro...@life.bio.sunysb.edu
Organization: Stony Brook University
To: morphmet@morphometrics.org
I have just uploaded
Original Message
Subject: Geometric Morphometrics courses
Date: Fri, 25 May 2012 05:06:01 -0400
From: Soledad Esteban soledad.este...@icp.cat
To: morphmet@morphometrics.org
Dear colleagues:
This e-mail is to inform you of some courses on Geometric Morphometrics,
which may
Original Message
Subject:Re: EVAN Toolbox lighting problem
Date: Thu, 17 May 2012 06:58:11 -0400
From: Helgi Pétur Gunnarsson helgipe...@gmail.com
To: morphmet@morphometrics.org
Hello Stephanie,
The lighting sometimes can get messed up if you do a GPA
Original Message
Subject: RE: Soft tissue analyse
Date: Tue, 15 May 2012 01:03:26 -0400
From: Ivan Huber i...@randomtech.com
To: morphmet@morphometrics.org morphmet@morphometrics.org
Interesting problem,. What about either freezing the organ in a
standard way or preserving
Original Message
Subject: correcting for body size
Date: Tue, 15 May 2012 11:03:28 -0400
From: Saad Arif arifs...@gmail.com
To: morphmet@morphometrics.org
Hello all,
I have linear measurements for eye area and body size in Drosophila. I
want to get residuals for eye area
Original Message
Subject: Re: Soft tissue analyse
Date: Wed, 16 May 2012 08:26:16 -0400
From: Kim van der Linde k...@kimvdlinde.com
To: morphmet@morphometrics.org
CC: morphmet morphmet_modera...@morphometrics.org
I would suggest looking into techniques that go beyond
Original Message
Subject: Re: correcting for body size
Date: Wed, 16 May 2012 08:30:33 -0400
From: Kim van der Linde k...@kimvdlinde.com
To: morphmet@morphometrics.org
CC: morphmet morphmet_modera...@morphometrics.org
You effectively ask for an allometric regression.
1. take
Original Message
Subject:EVAN Toolbox lighting problem
Date: Wed, 16 May 2012 16:21:40 -0400
From: Stephanie Kozakowski stephanie.kozakow...@utoronto.ca
To: morphmet@morphometrics.org
Hi all,
I am using the EVAN Toolbox v.1.52 and am having trouble getting
Original Message
Subject: Re: Soft tissue analyse
Date: Sun, 13 May 2012 13:04:45 -0400
From: Carmelo Fruciano c.fruci...@unict.it
To: morphmet@morphometrics.org
Dear all,
I would like to quantify the shape of an soft tissue organ. However I am
not sure what would
Original Message
Subject:Re: Head Shape Question
Date: Sun, 13 May 2012 14:15:46 -0400
From: kalpana das kkalpanaa1...@gmail.com
To: morphmet@morphometrics.org
Dear Dustin,
I had somewhat similar kind of question.I used sliding semilandmark
method to capture
Original Message
Subject:Soft tissue analyse
Date: Wed, 9 May 2012 12:55:57 -0400
From: Julia Klaczko jklac...@gmail.com
To: morphmet@morphometrics.org
Dear all,
I would like to quantify the shape of an soft tissue organ. However I am
not sure what would
Original Message
Subject: RE: permutations in TPSRegr and asymmetry in pictures
Date: Thu, 26 Apr 2012 22:07:27 -0400
From: F. James Rohlf ro...@life.bio.sunysb.edu
Reply-To: ro...@life.bio.sunysb.edu
Organization: Stony Brook University
To: morphmet@morphometrics.org
What
Correction as per Dr. Corner:
archit...@headus.com.au
should be
archi...@headus.com.au.
-the mod [dslice]
On 5/1/12 11:38 PM, morphmet_modera...@morphometrics.org wrote:
- Forwarded message from Corner, Brian D CIV (US) -
Date: Tue, 1 May 2012
Original Message
Subject:Re: Regression of Shape with size
Date: Wed, 2 May 2012 10:09:13 -0400
From: Antigoni Kaliontzopoulou ant...@gmail.com
To: morphmet@morphometrics.org
Hello Kaplana,
if your images were not made from the same distance and you don't
Original Message
Subject: Re: Regression of Shape with size
Date: Wed, 2 May 2012 17:01:05 -0400
From: F. James Rohlf ro...@life.bio.sunysb.edu
Reply-To: ro...@life.bio.sunysb.edu
To: Morphmet morphmet@morphometrics.org
If you have the SVL for each specimen then you can use
Original Message
Subject: CT Scan + MorphoJ
Date: Wed, 18 Apr 2012 23:14:11 -0400
From: Gabrielle Openshaw gabrielle.opens...@gmail.com
To: morphmet@morphometrics.org
Hi all,
Has anybody tried using CT scan data in MorphoJ? I want to analyse
skull shape disparity and really
Original Message
Subject: permutations in TPSRegr and asymmetry in pictures
Date: Mon, 23 Apr 2012 07:16:58 -0400
From: andrea cardini alcard...@gmail.com
To: morphmet@morphometrics.org
Dear Morphometricians,
please, has anyone got any experience with the different options
Original Message
Date: Sun, 22 Apr 2012 07:59:15 -0700
From: Fred Bookstein f...@brainmap.stat.washington.edu
To: morphmet_modera...@morphometrics.org
April 22, 2012
Dear colleagues,
Anybody who finds themselves anywhere near Vienna
Original Message
Subject: MorphoJ and CVA
Date: Wed, 25 Apr 2012 13:46:30 -0400
From: Robert Ward r.w...@bangor.ac.uk
To: morphmet@morphometrics.org
Please forgive me if I'm making an obvious error. I'm trying to
reconcile different outputs relating to CVA results in MorphoJ
Original Message
Subject: categorical variables in pls
Date: Wed, 25 Apr 2012 16:46:51 -0400
From: Rodrigo Lima rodrigo.l...@mail.mcgill.ca
To: morphmet@morphometrics.org morphmet@morphometrics.org
Dear morphometricians,
Does it make sense to use categorical variables
Original Message
Subject: Announcement of Robert R. Sokal's Death from Mike Bell
Date: Sun, 15 Apr 2012 23:01:28 -0400
From: Michael A. Bell mab...@life.bio.sunysb.edu
Reply-To: mab...@life.bio.sunysb.edu
To: morphmet@morphometrics.org
CC: mab...@life.bio.sunysb.edu
We
Original Message
Subject: MorphoJ
Date: Fri, 13 Apr 2012 09:31:57 -0400
From: John Elizabeth Cook jpc...@ptialaska.net
To: morphmet@morphometrics.org
Are there any online tutorials for MorphoJ?
Original Message
Subject:Re: Strange tpsDig2 problem
Date: Tue, 10 Apr 2012 02:08:25 -0400
From: Saber Sadeghi sabersade...@yahoo.com
To: morphmet@morphometrics.org
Dear Karl
at first you have to make a file for your samples' pictures with
separate names
Original Message
Subject:update to tpsUtil
Date: Wed, 4 Apr 2012 22:28:00 -0400
From: F. James Rohlf ro...@life.bio.sunysb.edu
Reply-To: ro...@life.bio.sunysb.edu
Organization: Stony Brook University
To: morphmet@morphometrics.org
I have just
Original Message
Subject:Next Engine scanner protocol
Date: Mon, 9 Apr 2012 18:01:31 +0200
From: Javier Santos javiersant...@hotmail.com
To: Morphomet New Mailing List morphmet_modera...@morphometrics.org
Hello morphometricians,
I am working with snow vole
Original Message
Subject:Question about integration indices compared at a common level
of sampled population variance
Date: Mon, 9 Apr 2012 14:41:49 -0400
From: Makedonska, Jana jmakedon...@albany.edu
To: morphmet@morphometrics.org morphmet@morphometrics.org
Original Message
Subject: Re: Strange tpsDig2 problem
Date: Mon, 9 Apr 2012 14:58:15 -0400
From: Liu Idárraga liuidarr...@gmail.com
To: morphmet@morphometrics.org
Hi Karl,
I also have files .tps with a mixture of images: obtained with scanner
and also with camera. I haven't
Original Message
Subject:Re: Re: Next Engine scanner protocol
Date: Mon, 9 Apr 2012 16:22:25 -0400
From: Caley Orr caley@gmail.com
To: morphmet@morphometrics.org
I concur with Heather that the HD Pro software is absolutely essential
and also that doing
Original Message
Subject: Re: Strange tpsDig2 problem
Date: Mon, 9 Apr 2012 16:25:09 -0400
From: F. James Rohlf ro...@life.bio.sunysb.edu
Reply-To: ro...@life.bio.sunysb.edu
To: Morphmet morphmet@morphometrics.org
Send me a copy of the tps file (not the actual images
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