Hi Andreas and Michael,
On Tue, 14 Apr 2020 at 10:19, Andreas Tille wrote:
> Hi Michael,
>
> On Sun, Apr 12, 2020 at 02:34:26PM +0200, Michael Crusoe wrote:
> > I'm not seeing a successful build on big-endian. Of the offically
> supported
> > architectures, only s390x is big-endian and it's
Hi Andreas,
It looks like the upstream fixed the issue in some recent version, as
according to the logs [1], the package builds now for big-endians as well.
Do you agree, that we can close the bug as well as the issue?
Best regards,
Liubov
[1] http://buildd.debian.org/python-biom-format
Hi Paul,
I tried hard but wasn't able to reproduce the bug (in a clean chroot). Even
for the stable version (2.3.0-2) tests are passing (several times in a
row). Looking at the debci logs [1], tests are passing for quite some time.
Do you think, it makes sense to keep it longer?
Best regards,
Hi Andreas,
As I mentioned during today's Jitsi meeting, kmer builds and all the tests
passed in a clean sbuild schroot. Should we close the bug and make a
release then?
Regards,
Liubov
On Thu, 9 Apr 2020 at 20:30, Andreas Tille wrote:
> Liubov,
>
> you are great! :-)
>
:-) I am always happy to help!
Regards,
Liubov
On Thu, Apr 09, 2020 at 06:21:17PM +0200, Liubov Chuprikova wrote:
> > I have just checked the file and as Michael said during the Jitsi
&g
Hi Andreas and Pranav,
On Thu, 9 Apr 2020 at 10:06, Andreas Tille wrote:
> Hi folks,
>
> could anybody who works with sequences comment on this?
>
I have just checked the file and as Michael said during the Jitsi meeting,
Plink (in Debian) uses such a format. I just tried quickly and it's
Hi everyone,
I am going to share lists of packages/workflows that were mentioned during
the "Kickoff" opening video conference today. Those are possible candidates
for us to work on or to continue working on (if already in Debian):
- R package for the data collated by Johns Hopkins:
Hi Andreas and Pranav,
That's great news! Congrats, Pranav, on one more bug closed!
Regards,
Liubov
On Thu, 27 Feb 2020 at 09:47, Andreas Tille wrote:
> Hi again,
>
> loki smoothly migrated to testing so may be my local install was the
> only place where the test failed (for whatever reason).
Hi Andreas,
I ran loki's tests on my machine in sbuild environment, and I got no
errors. As I understand it, the loki.dat file has to exist after "prep"
steps. I added an "ls" into the run-unit-test to check this. Also, I turned
on the build-time tests that are more or less the same as for the
Dear Andreas,
Could you please upload the following QIIME2 plugins:
- q2-cutadapt
- q2-demux
- q2-quality-filter
- q2-feature-table
Regards,
Liubov
Hi Andreas,
Thanks for your help with adding the missing licenses! After the new pandas
release, q2-metadata builds without errors. So, it's ready for the upload
to the NEW again!
With regards,
Liubov
On Tue, 12 Nov 2019 at 11:31, Andreas Tille wrote:
> Hi Thorsten,
>
> the license issue is
Hi Andreas,
I was updating q2-types and had faced the following error:
-
conflict:
pkg1:
package: python3-pandas
version: 0.25.3+dfsg-4
architecture: all
unsat-conflict: python3-skbio:amd64 (< 0.5.5-2.1)
pkg2:
package: python3-skbio
version:
-- Forwarded message -
From: Liubov Chuprikova
Date: Fri, 6 Sep 2019 at 13:19
Subject: Re: q2-demux_2019.4.1-1_amd64.changes REJECTED
To: Andreas Tille
Cc: Debian Med Packaging Team
(It seems that sending an email to <
debian-med-packag...@lists.alioth.debian.org>
Hi Andreas,
On Mon, 9 Sep 2019 at 17:22, Andreas Tille wrote:
> Hi Liubov,
>
> On Sat, Sep 07, 2019 at 03:12:05PM +0200, Liubov Chuprikova wrote:
> > Hi Andreas,
> >
> > I have just prepared to upload new versions:
> >
> >- q2-metadata,
> >-
Hi Andreas,
I have just prepared to upload new versions:
- q2-metadata,
- q2-quality-filter,
- q2-feature-table,
- q2-taxa.
Could you please upload them? All are still in NEW and all depend on
q2templates. Do we only need to re-upload q2templates or there was some
problem with the
Hi Andreas,
Could you please make an upload of q2-cutadapt?
With regards,
Liubov
On Thu, 5 Sep 2019 at 18:59, Andreas Tille wrote:
> Hi Liubov,
>
> On Thu, Sep 05, 2019 at 05:22:33PM +0200, Liubov Chuprikova wrote:
> > I have just noticed some other routine updates (new Standards-Version,
> > debhelper-compat instead of debhelper) that I missed while upd
. Is it normal or I should set
up some additional flag to see it?
With regards,
Liubov
On Thu, 5 Sep 2019 at 16:11, Liubov Chuprikova
wrote:
> Hi Andreas,
>
> I have checked q2cli (minor changes) and upgraded q2templates. They are
> ready for upload now.
>
> With regards,
> Liubov
>
Hi Andreas,
I have checked q2cli (minor changes) and upgraded q2templates. They are
ready for upload now.
With regards,
Liubov
Hi Andreas,
Sorry for my late reply! I am back from my vacation now and hopefully, the
upcoming month will not be so busy so I will be able to continue with
qiime2 plugins :-)
Related to the problem you mentioned, there was wrong upstream tarball
uploaded. I have fixed it and made some minor
Hi Andreas,
Could you please make an upload of q2-taxa?
With regards,
Liubov
Hi Andreas,
On Sun, 14 Jul 2019 at 18:20, Andreas Tille wrote:
> Hi Liubov,
>
> On Sat, Jul 13, 2019 at 10:32:29PM +0300, Liubov Chuprikova wrote:
> > I would like to package q2-emperor, but it needs the latest version of
> > emperor. I see that some work on emperor h
Hi,
I would like to package q2-emperor, but it needs the latest version of
emperor. I see that some work on emperor has already started [1] a while
ago, but there haven't been any releases yet. Would it be ok if I package
the lastest version of emperor?
Best,
Liubov
[1]
Hi Andreas,
On Sat, 15 Jun 2019 at 12:36, Liubov Chuprikova
wrote:
>
>
> On Sat, 15 Jun 2019 at 11:14, Andreas Tille wrote:
>
>> Dear Liubov,
>>
>> On Sat, Jun 15, 2019 at 10:39:30AM +0200, Liubov Chuprikova wrote:
>> > I am stuck with source-is-missing
Hi Andreas,
On Fri, 12 Jul 2019 at 15:14, Andreas Tille wrote:
> Hi Liubov,
>
> On Fri, Jul 12, 2019 at 01:56:17PM +0300, Liubov Chuprikova wrote:
> > >
> > > The autopkgtests are just the boilerplate from the package_template.
> > > Do you think you can
Hi Andreas,
On Fri, 12 Jul 2019 at 11:55, Andreas Tille wrote:
> Hi Liubov,
>
> thanks for working on.
>
> On Fri, Jul 12, 2019 at 11:39:20AM +0300, Liubov Chuprikova wrote:
> > I am happy to continue with QIIME2: could you please take a look at
> > q2-feature-class
Hi Andreas,
I am happy to continue with QIIME2: could you please take a look at
q2-feature-classifier and q2-quality-filter and upload them if they are OK?
Thank you!
__
Liubov
Hi all,
BTW, Congratulations on Buster Release! :-)
On Sat, 6 Jul 2019 at 12:13, Andreas Tille wrote:
> Hi Saira & Liubov,
>
> On Fri, Jul 05, 2019 at 04:32:44PM +0200, Liubov Chuprikova wrote:
> > On Fri, 5 Jul 2019 at 15:15, Saira Hussain wrote:
>
> > [1] ht
On Fri, 5 Jul 2019 at 16:24, Saira Hussain wrote:
> On 7/5/19 3:15 PM, Liubov Chuprikova wrote:
> > Hi Saira,
> >
> Hi Liubov!
>
> > On Fri, 5 Jul 2019 at 15:15, Saira Hussain > <mailto:saira.h0...@zoho.com>> wrote:
> >
> >
> >
Hi again,
On Fri, 5 Jul 2019 at 15:15, Saira Hussain wrote:
>
> Part 1 - Exploring HYPHYGTEST
>
> My first step was to replicate some of the test suites inside Hyphy. In
> order to do that I copied the SimpleAnalysis suite inside the tests and
> configured them to run through autobuild.
>
Hi Saira,
On Fri, 5 Jul 2019 at 15:15, Saira Hussain wrote:
>
> Then I looked for every bf file in a loop and I run it with HYPHYMPI.
> This was something I could sucesfully run as a manual test but the
> result I am currently getting an error as follows (after running sbuild -s)
>
>
> 1 not
Hi Andreas,
On Tue, 25 Jun 2019 at 07:54, Andreas Tille wrote:
> On Tue, Jun 25, 2019 at 12:11:17AM +0200, Liubov Chuprikova wrote:
> >
> > python-dnaio is ready for upload!
>
> Uploaded. Thanks again for your work on this. I'm somehow smelling a
> "compet
Hi Andreas,
On Thu, 20 Jun 2019 at 22:27, Andreas Tille wrote:
> Dear Liubov,
>
> On Thu, Jun 20, 2019 at 10:03:27PM +0200, Liubov Chuprikova wrote:
> > I have started with q2-cutadapt plugin for QIIME 2 and it has appeared
> that
> > firstly python-cutadapt package nee
Hi Andreas and Olivier,
I have started with q2-cutadapt plugin for QIIME 2 and it has appeared that
firstly python-cutadapt package needs to be upgraded to its latest version
2.3. There are some major changes from 2.0: first, python2 is no longer
supported; second, now it depends on dnaio library
Hi Andreas,
I have just finished with q2-metadata plugin, tested it with locally built
q2templates and q2-types. Could you please check it and make an upload?
With regards,
Liubov
On Sat, 15 Jun 2019 at 11:14, Andreas Tille wrote:
> Dear Liubov,
>
> On Sat, Jun 15, 2019 at 10:39:30AM +0200, Liubov Chuprikova wrote:
> > I am stuck with source-is-missing lintians again:
> >
> > E: q2-feature-table source: source-is-missing
>
Hi Andreas,
I am stuck with source-is-missing lintians again:
E: q2-feature-table source: source-is-missing
q2_feature_table/_summarize/tabulate_seqs_assets/js/tsorter.min.js
E: q2-feature-table source: source-is-missing
q2_feature_table/_summarize/summarize_assets/vega/js/vega-embed.min.js
E:
Hi,
On Fri, 14 Jun 2019 at 15:35, Andreas Tille wrote:
> Dear Saira,
>
> On Thu, Jun 13, 2019 at 02:24:39PM +0100, Saira Hussain wrote:
> > > > > sid) and the built has finished successfully, so I guess it should
> work
> > > > > for you as well.
> > > > Great. I followed your suggestion on
Dear Andreas,
I think this should have happened to me, as I had not used to pay attention
to symlinks. I have forgotten to delete old q2cli upstream tarball and
uploaded it into q2-types repo accidentally, as the version was exactly the
same. I reverted the changes now, sorry for the mess!
So,
On Thu, 13 Jun 2019 at 21:18, Andreas Tille wrote:
> Dear Liubov,
>
> On Thu, Jun 13, 2019 at 08:45:51PM +0200, Liubov Chuprikova wrote:
> > Could you please check q2cli and make an upload
>
> It was a pleasure to upload. ;-)
> BTW, there seems to be no upstream source t
Hi Andreas,
Could you please check q2cli and make an upload? I would like to update
q2-types as well (there are two new upstream versions available), but
q2-types is in NEW. Can I proceed or should we wait until it is accepted?
With regards,
Liubov
Hi Steffen,
On Wed, 12 Jun 2019 at 14:44, Steffen Möller wrote:
> On 12.06.19 09:00, Andreas Tille wrote:
>
> > Hi Liubov,
> >
> > On Tue, Jun 11, 2019 at 11:26:47PM +0200, Liubov Chuprikova wrote:
> >> I have updated qiime for a new version 2019.4.0, which i
Hi Andreas,
I have updated qiime for a new version 2019.4.0, which is actually the same
I need to use for testing newly packaged plugins. Could you please check it
for me and upload?
With regards,
Liubov
Hi Andreas,
On Sat, 8 Jun 2019 at 10:25, Andreas Tille wrote:
> Hi Liubov and Elmar,
>
> On Tue, Jun 04, 2019 at 08:56:58PM +0200, Andreas Tille wrote:
> > Regarding libARB I've got an answer to my question[1] which was CCed
> > to the list but did not arrived in the web archive. It boils down
Hi Andreas,
I have just finished with both q2templates and q2-demux. For q2templates,
all the dependencies are satisfied. q2-demux depends on q2templates and
q2-types which is in NEW. I have tested it using my local binaries. Is it
possible to upload both now?
With regards,
Liubov
not added the needed dependencies and symlinking you are
> mentioning below.
>
> Hope this helps
>
> Andreas.
>
With regards,
Liubov
>
> On Fri, Jun 07, 2019 at 01:08:44PM +0200, Liubov Chuprikova wrote:
> > Hi,
> >
> > I am getting two lintian errors:
Hi,
I am getting two lintian errors:
E: q2templates source: source-is-missing
q2templates/templates/assets/js/bootstrap.min.js
E: q2templates source: source-is-missing
q2templates/templates/assets/js/jquery-3.2.0.min.js
As I understood, these two files should be removed from the upstream
Hi Andreas,
Finally, I have time now to proceed with the packaging of QIIME2 plugins
:-) Just to remember, q2-types is still in the NEW queue. q2-alignment
needs SINA aligner which, in its turn, has libARB dependency which is
non-free and therefore hinders SINA's packaging. What could be a
Hello Saira,
On Tue, 4 Jun 2019 at 15:50, Saira Hussain wrote:
> Hi all!
>
> I am currently working on the tests for the package ePCR. I've noticed
> that there is a subfolder epcr under the main folder epcr.
I am a bit confused as I cannot find any epcr subfolder on Salsa [1].
> If I run
Hi,
On Sun, 7 Apr 2019 at 11:30, Graham Inggs wrote:
> Hi Andeas
>
> On Sun, 7 Apr 2019 at 07:50, Andreas Tille wrote:
> > I have no idea why command1 is failing. Anybody who can reproduce
> > this test result and can fix this test?
>
> The output of command1 is the following:
>
> autopkgtest
Dear Andreas,
On Fri, 29 Mar 2019 at 23:40, Andreas Tille wrote:
> Dear Liubov,
>
> On Fri, Mar 29, 2019 at 07:09:18PM +0100, Liubov Chuprikova wrote:
> > >
> >
> > All the tests are passing now :-)
>
> Cool!
>
> > For this package, there is o
Hi Andreas,
On Fri, 29 Mar 2019 at 16:03, Andreas Tille wrote:
> Hi Liubov,
>
> after uploading q2-types to new I added this to Build-Depends of
> q2-alignment and tried to build this package. When doing so I get:
>
>
> ...
> test_gap_boundaries (q2_alignment.tests.test_filter.MaskTests) ...
On Sun, 24 Mar 2019 at 21:53, Andreas Tille wrote:
> Dear Liubov,
>
> On Sun, Mar 24, 2019 at 09:27:55PM +0100, Liubov Chuprikova wrote:
> >
> > Sorry for this mess! In the beginning, I set the bug owner to "Debian Med
> > Packaging Team " (just
>
for
> QIIME 2
> > Owner changed from Liubov Chuprikova to Debian
> Med team .
>
> While I think there is no harm done by changing the owner of this ITP
> bug its rather unusual.
Sorry for this mess! In the beginning, I set the bug owner to "Debian Med
Packaging Team "
On Sat, 23 Mar 2019 at 13:00, Saira Hussain wrote:
> On Sat, 23 Mar 2019 11:41:07 +0000 *Liubov Chuprikova
> >* wrote
>
> Hi Saira,
>
>
> Hi Luibov!
>
>
> On Fri, 22 Mar 2019 at 17:50, Andreas Tille wrote:
>
> Dear Saira,
>
> On Fri, Ma
Hi Andreas,
On Wed, 20 Mar 2019 at 11:35, Andreas Tille wrote:
> Hi Liubov,
>
> thanks a lot for your comments. I have no idea whether there is some
> point in making you an official co-mentor but if you see some advantage
> for you in adding you officially that would be perfectly fine for me.
Hi Saira,
On Fri, 22 Mar 2019 at 17:50, Andreas Tille wrote:
> Dear Saira,
>
> On Fri, Mar 22, 2019 at 03:15:37PM +, Saira Hussain wrote:
> > I am filling up my Outreachy application and there's a field where the
> timeline of the project should be discussed and specified with you :)
>
> I
Hi Saira,
I am glad to know there is a new potential Outreachy student! :-)
On Tue, 19 Mar 2019 at 09:13, Andreas Tille wrote:
> On Mon, Mar 18, 2019 at 11:11:11PM +, Saira Hussain wrote:
>
> > What's the best way to use autopkgtest locally to emulate the test? As I
> currently
> > only
Hi Andreas,
I have a question about tab-completion script that we moved to
/etc/profile.d. When running qiime --help it gives the following:
```
To enable tab completion in Bash, run the following command or add it to
your \
.bashrc/.bash_profile:
source tab-qiime
To enable tab completion
Hi Michael,
On Thu, 14 Mar 2019 at 15:14, Michael Crusoe
wrote:
>
> Just to let you know that the Biohackathon2019 website (
> https://biohackathon-europe.org/) has been launched and the Call for
> Hacking projects is officially open. So please submit the full proposal in
> easychair (
Dear Andreas,
On Tue, 12 Mar 2019 at 09:25, Andreas Tille wrote:
> Hi Liubov,
>
> On Tue, Mar 12, 2019 at 12:47:59AM +0200, Liubov Chuprikova wrote:
> > The old qiime(1) dependencies were not deleted from the d/control. I have
> > pushed the required changes.
>
> T
Hi Andreas,
The old qiime(1) dependencies were not deleted from the d/control. I have
pushed the required changes.
Un saludo,
Liuba
Hi Andreas,
I have just found the easiest bug to solve :-) This one was solved in the
very next version 2018-07-04-4 and since then the autopkgtest is passing
everywhere [1].
With regards,
Liubov
[1] https://ci.debian.net/packages/g/gmap/
Hi,
I have just pushed a fix for this. In fact, the solution was proposed in
one of the previous messages [1]: the test suite was returning True some
time ago, but now it returns the exit code instead.
Some tests are `xfail`-ing (in the beginning I thought that's was the
problem) but as I
On Mon, 4 Feb 2019 at 11:32, Andreas Tille wrote:
> On Mon, Feb 04, 2019 at 11:05:36AM +0100, Liubov Chuprikova wrote:
> >
> > I have just pushed a fix of this! The problem was with two processes
> > competing for the same temporary file, as the tempfile names we
Hi Andreas,
On Sun, 27 Jan 2019 at 16:23, Andreas Tille wrote:
> Control: tags -1 help upstream
> Control: forwarded -1 https://github.com/cbcrg/tcoffee/issues/13
>
> Hi Liubov,
>
> On Sun, Jan 27, 2019 at 04:06:51PM +0100, Liubov Chuprikova wrote:
> > I was trying
On Sun, 3 Feb 2019 at 12:20, Andreas Tille wrote:
> Hi Liubov,
>
> On Sun, Feb 03, 2019 at 11:49:46AM +0100, Liubov Chuprikova wrote:
> >
> > I have just pushed a fix, and (again) it was (just) a missing return in
> > one of the functions that caused that undefined be
Hi Andreas,
On Wed, 30 Jan 2019 at 16:45, Andreas Tille wrote:
> Hi,
>
> since I activated hardening options in snap-aligner its test suite
> segfaults:
>
> LandauVishkinTest:
> - equal strings: [OK]
> - prefixes: [OK]
> - non-equal strings: [OK]
> - overly distant strings:
Hi,
I was trying to figure out the reason for the failure but without any
success. It appeared that the error is reproducible with the upstream's
source version, so I have just opened an issue [1] to inform the upstream
about this bug.
[1] https://github.com/cbcrg/tcoffee/issues/13
With
Hi Olivier,
On Thu, 17 Jan 2019 at 09:27, olivier sallou
wrote:
> Hi,
> Debian leader has approved reimbursment request for Debianmed sprint for
> DDs and outreachy students.
>
>
This is great! Thank you a lot!
__
Liubov
Hi Andreas,
On Mon, 17 Dec 2018 at 20:25, Andreas Tille wrote:
> On Mon, Dec 17, 2018 at 06:00:59PM +0100, Liubov Chuprikova wrote:
> > > Could someone please have a look?
> >
> > I have started to investigate this: the fail is related to recent
> upstream
>
Hi Andreas,
On Sat, 15 Dec 2018 at 08:51, Andreas Tille wrote:
>
> upstream has closed issue #91[1] and it should work with Debian
> packaged htslib. Thus I've added libhts-dev to Build-Depends
but the build finally fails with
>
> ...
> I: pybuild base:217: cd
>
Hi Andreas,
On Sun, 21 Oct 2018 at 00:10 Andreas Tille wrote:
> On Sat, Oct 20, 2018 at 05:40:44PM +0200, Liubov Chuprikova wrote:
> >
> > the required "testing plugin" (dummy-plugin) is defined as an
> > entry point argument in setup.py. Qiime uses pkg_resource
Hi Andreas,
I finally found some time to push an autopkgtest for unicycler :) A bit of
rearrangement was also done in unicycler-data [1].
On Thu, 27 Sep 2018 at 16:28 Andreas Tille wrote:
> On Thu, Sep 27, 2018 at 01:37:37PM +0200, Liubov Chuprikova wrote:
> >
&g
Hi Andreas,
On Sat, 20 Oct 2018 at 10:48 Andreas Tille wrote:
> Hi,
>
> I decided to upgrade the packaging Git for qiime[1] to qiime2 since we
> can not distribute qiime 1 any more. The current status is very rough
> but I'm stumbling upon a strange error in the build time test:
>
> ...
>
Hi Andreas,
On Thu, 27 Sep 2018 at 16:28 Andreas Tille wrote:
>
> On Thu, Sep 27, 2018 at 01:37:37PM +0200, Liubov Chuprikova wrote:
> > I got
> > the following error:
> >
> > Error: Pilon was found (/usr/bin/pilon) but does not work - either fix
> it,
>
чт, 27 сент. 2018 г., 16:28 Andreas Tille
> On Thu, Sep 27, 2018 at 01:37:37PM +0200, Liubov Chuprikova wrote:
> >
> > I decided not to use the same tests that we run during the package build
> in
> > autopkgtest suite since these tests do not check executables and
Hi Andreas,
On Sun, 16 Sep 2018 at 13:21 Andreas Tille wrote:
> On Sat, Sep 15, 2018 at 06:01:43PM +0200, Liubov Chuprikova wrote:
>
> > Should I try to implement the same tests as autopkgtest suite? If so, I
> > will have to put all required scripts and test data into the same
Dear Andreas,
I am sorry for too aggressive quoting in the previous message: after the
first quotation block there go other questions. Could you please answer
them too?
On Sat, 15 Sep 2018 at 23:42 Andreas Tille wrote:
> Hi Liubov,
>
> On Sat, Sep 15, 2018 at 06:01:43PM +020
8 at 20:46 Andreas Tille wrote:
> On Sat, Sep 08, 2018 at 01:36:10PM +0200, Liubov Chuprikova wrote:
> > > In general I have no problem to skip tests in a
> > > package. There can be different reasons for failing tests - sometimes
> > > the test itself is wrong.
> &g
Hi Andreas,
On Fri, 7 Sep 2018 at 21:37 Andreas Tille wrote:
> In general I have no problem to skip tests in a
> package. There can be different reasons for failing tests - sometimes
> the test itself is wrong.
The tests itself are definitely correct.
> So if we know why a test fails
Hi Andreas,
I finally made some progress with unicycler (As you said it is mañana :D).
A couple of tests still fails, but the reason does not seem to be in
missing files as these tests just check running with --help option. I am
going to take a closer look at this later.
Is it OK how it builds
Hi,
I have just finished with an autopkgtest for kmer, adding one more test and
all necessary accompanying changes. One of the tests, atac-unit-test, was
uploaded in the previous release and it failed with a segmentation fault
[1] which I mentioned in the list previously [2]. Unfortunately, I
Hi Steffen,
On Mon, 13 Aug 2018 at 17:36 Steffen Möller wrote:
> Hi Liubov,
>
> On 8/1/18 3:48 AM, Liubov Chuprikova wrote:
> > On Tue, 31 Jul 2018 at 21:22 Steffen Möller > <mailto:steffen_moel...@gmx.de>> wrote:
> >
> > I think if you could brin
Hi Andreas,
I have just pushed a simple autopkgtest for flexbar. There are
no lintian warnings to fix. Could you please make an upload?
Thank you,
Liubov Chuprikova
elopers as you possibly can to find out what you may be even more
> interested in.
>
:-)
Wishing you (all) a pleasant and educational time over there
>
Thank you!
Kind regards,
Liubov Chuprikova
e help!
With regards,
Liubov Chuprikova
P.S. Writing from my first DebConf in Taiwan :-)
Ouch, sorry! I first planned to write also a bit about python-cyvcf2 that
is why I included it in the Subjest. Then I decided to devote to it a
separate letter, but forgot to remove it from the Subject.
Since this has happened, I am to mention cyvcf2 here.
On Sun, 8 Jul 2018 at 01:23 Steffen
Hi Steffen,
On Fri, 20 Jul 2018 at 01:21 Steffen Möller wrote:
> So, many, many, many thanks to Liubov for hunting this down for us.
That's a plessure for me to do something helpful! :-) But now I see it's
out of my hands to continue with python-pybedtools, at least untill Debian
Med member's
Hi Andreas,
On Sun, 15 Jul 2018 at 18:10 Andreas Tille wrote:
> On Sun, Jul 15, 2018 at 02:12:12PM +0300, Liubov Chuprikova wrote:
>
> > What else needs to be done so that we could get the package back into
> > distribution.
>
> It does not build for me in a
Hi Steffen! Hi Andreas!
On Fri, 13 Jul 2018 at 12:14 Liubov Chuprikova
wrote:
> On Tue, 10 Jul 2018 at 14:04 Steffen Möller
> wrote:
>
>> I admit not to really know myself where to start. python-seqcluster,
>> pythong-gfftools, python-pybedtools, python-cyvc
Hi Steffen,
On Tue, 10 Jul 2018 at 14:04 Steffen Möller wrote:
> I admit not to really know myself where to start. python-seqcluster,
> pythong-gfftools, python-pybedtools, python-cyvcf2 are all not in our
> distribution but only on salsa.
>
I have started with python-pybedtools and pushed a
Hi Andreas,
I have just pushed an autopkgtest and a simple patch to fix gff2ps so that
it exits with "0" when a run is successful. Please, check out my commits!
I am going to look into the python packages Steffen wrote about.
With regards,
Liubov
Hi Andreas,
On Tue, 10 Jul 2018 at 10:58 Andreas Tille wrote:
> On Mon, Jul 09, 2018 at 05:34:11PM +0200, Andreas Tille wrote:
> > Looks pretty sensible. Just go for it.
>
> Upgraded to latest upstream and uploaded (with you as changelog
> owner).
>
Thanks a lot! I planned to fix the lintian
Hi Andreas,
I noticed that HYPHYGTK build target was removed in the latest version.
Moreover, all the code related to GUI and GTK was deleted as it is said
here [1]. So, I guess we need to delete *hyphygui* binary package from
hyphy as well. Just doing it solves the build problems completely. If
Hi,
On Mon, 9 Jul 2018 at 10:27 Andreas Tille wrote:
> Hi,
>
> Steffen, if you think Liubov might be able to help at getting tests
> working it is fine for me if she wants to tackle this.
I would try to fix these tests.
@Steffen: May be to get Liubov started its helpful if you provide some
Hi Andreas,
I have just pushed an autopkgtest and other minor changes for
*fastdnaml* . Please,
take a look at the commits [1]!
With regards,
Liubov
[1] https://salsa.debian.org/med-team/fastdnaml/commits/master
Hi Andreas,
I pushed an autopkgtest for autodock-vina and also fixed some
lintian warnings as usual. By the way, lintian says that the newest version
of Debian Policy (4.1.5) should be indicated. I did so, is it OK?
On Sat, 7 Jul 2018 at 09:37 Andreas Tille wrote:
> Let me know if you need
On Fri, 6 Jul 2018 at 08:56 Andreas Tille wrote:
> I admit I've spent so many
> hours into this software compared to other that my motivation to deal
> with this issue is not going beyond restricting it just to amd64 (which
> seems to be the only *tested* platform).
Oh, I just misread the
Dear Andreas,
On Fri, 6 Jul 2018 at 10:04 Liubov Chuprikova
wrote:
>
> Here upstream implemented [1] this function `uint64_msbit` for x86-64 [2]
> and for Windows, presumably. But it was not defined for i386, so there is a
> warning during the build [3]:
>
> warning: im
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