Re: AI-GEOSTATS: RES: Tomorrow: Webinar: April 28th, Applied Example of Data Science Technology

2015-04-28 Thread Isobel Clark
 Is it just me or does this advert say Monday 28th April??
http://www.kriging.com/whereisshe.htm
  From: Marcus Mattos Riether marcus.riet...@caixaseguros.com.br
 To: Lisa Solomon li...@salford-systems.com; ai-geostats@jrc.it 
ai-geostats@jrc.it 
 Sent: Tuesday, April 28, 2015 11:43 AM
 Subject: AI-GEOSTATS: RES: Tomorrow: Webinar: April 28th, Applied Example of 
Data Science Technology
   
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{margin-bottom:0cm;}#yiv7785629914 ul {margin-bottom:0cm;}#yiv7785629914 Dear 
Lisa, I had already filled-up my agenda for today at the time of seminar. I 
would be very happy if you could send me a recording. Best regards,    
|  |  |  |

   
| 
|  |  |  |

 |  |

   
|   | Marcus M Riether
Gerente de Resseguro
Gerência de Resseguro - GERSEG
Diretoria Técnica e de Controle de Riscos - DIRAT
Tel + 55 61 2192 2759  |

      

De: gregoire.dub...@gmail.com [mailto:gregoire.dub...@gmail.com]Em nome de Lisa 
Solomon
Enviada em: segunda-feira, 27 de abril de 2015 16:52
Para: ai-geostats@jrc.it
Assunto: AI-GEOSTATS: Tomorrow: Webinar: April 28th, Applied Example of Data 
Science Technology    Webinar: Monday, April 28th This webinar will be a 
step-by-step presentation that you can repeat on yourown geo, spatial AND 
APPLIED datasets!Although the focus is ROI and Business,corresponding GEO and 
SpatialApplications include: scenario planning, risk 

AI-GEOSTATS: Journals

2001-01-08 Thread Isobel Clark

Aargh!

Stop stop. They are gone! I have a waiting list of 10
for my IAMG and CG and am getting repetitive strain
injury from typing apologies.

If anyone else out there wants to clear their
libraries or studies, please let me know. I would be
more than happy to co-ordinate a clearing house
between wants and haves.

Happy New Year to everyone
Isobel Clark



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Re: AI-GEOSTATS: spatial statistics for small data sets

2001-01-23 Thread Isobel Clark

Dear Raechel

The answer to your question is a bit
chicken-and-egg-ish. 

If your data is well behaved (simple distribution,
pretty continuous) then you can get meaningful results
from very few samples (probably not less than 20 or
so!!) 

We have examples in the book with data sets of 27 and
up. The 27 one is no good for geostatistics but this
has more to do with the fact that the samples are 1km
apart when the range of influence is probably about
125 metres. The main tutorial set in the old book
(available free at
http://uk.geocities.com/drisobelclark/practica.html)
which we now call "Page 95" has 50 samples very
inefficiently placed which still yield good results
for interpretation and estimation purposes. Even more
so for simulation basis.

So, I would say, go ahead and try it but look at your
distribution before you go to geostatistics. Small
data sets will give much better results if Normal
(Gaussian) or normalised or transformed in some other
way.

If I can be of any more help, please let me know
Isobel Clark

 


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Re: AI-GEOSTATS: Block size - estimation variance - resource category.

2001-03-16 Thread Isobel Clark


--- William Thayer [EMAIL PROTECTED] wrote: 
Isobel:
 Would you mind expanding a little on your earlier
 reply?  In particular,
 what do you mean by (1) "kriging variance less than
 ordinary
 statistical sample variance", (2) "not measured but
 within the range
 of influence of at least 4 samples" and (3)
 "indicated is within range but
 the local average is a better estimator than the
 kriging"?
 
 Thanks in advance,
 Bill

Hi Bill

It is possible for the kriging variance to be higher
than the total sill of the semi-variogram. This total
sill is (theoretically) equal to the Normal population
variance if your data is (a) stationary and (b)
Normal. For lognormals use logarithms. Or transform
data to Normal scores before calculating
semi-variogram.

For example: if you estimate a point location from a
single sample just below the range of influence away,
the kriging variance is twice the total sill (unless
you follow the Stanford school, in which case it is
twice the total sill minus twice the nugget effect).

Now, if the kriging variance is higher than the
'sample' variance, it means that the population mean
(if you knew it) would be a better estimator than the
local kriging estimate. 

So even if you have samples within the range of
influence, you could still get an estimate which has
worse confidence than the regional average. This I
call "indicated". I'm sure it is there but I can't put
a local value on it.

If the kriging variance is less than the total sill
(suitably modified for non-point support), then one
can assign a 'local' value which is better than the
regional average. I consider this "measured".

Anything outside the range of influence is speculative
and the province of the geologist. I am a mining
engineer and don't do "inferred".

Does this help?
Isobel
http://uk.geocities.com/drisobelclark

PS: I have fond memories of Syracuse. Spent the summer
of '76 as visiting prof in geology.



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Re: AI-GEOSTATS: Variowin equations and cross-validation

2001-04-10 Thread Isobel Clark

Juliann

Judging the fit of a model cannot be done from the
summary statisics. See my 1986 paper "The Art of Cross
Validation" (full reference at
http://uk.geocities.com/drisobelclark/Publications.html)

Better to use something like Noel Cressie's goodness
of fit statistic which tests the semi-variogram fit to
the experimental with a weighted least squares.

Isobel Clark


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Re: AI-GEOSTATS: Variowin equations and cross-validation

2001-04-10 Thread Isobel Clark

AAgh, sprry people, Mark Burnett just pointed out that
I missed a bit in the Web reference:


http://uk.geocities.com/drisobelclark/resume/Publications.html

Mea culpa
Isobel Clark


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AI-GEOSTATS: conferences and courses

2001-04-24 Thread Isobel Clark

Hi all

I hope no-one will be offended by this e-mail. 

Given the recent problems with the main Web site, I
hope no-one will mind if I remind you all that
sandwiched between:

AAPG in Denver 3-6 June 2001

and the SIAM conference in Boulder 11-14 June 2001

we are holding the Zero to Kriging in 30 hours course
at the IGWMC in Golden, Colorado 7-10 June 2001.

Anyone who registers and turns up the day before is
invited to my birthday party on 6th!!

Details on the course and all other IGWMC activities
can be found at
http://www.mines.edu/research/igwmc/short-course/geostat.htm

Isobel Clark
http://uk.geocities.com/geoecosse/news.html


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Re: AI-GEOSTATS: Non-Monotone Variogram model

2001-05-06 Thread Isobel Clark

 A graph of semivariogram
 gamma(h)
 |.
 |   .
 |  .   .
 |..
 | .. .
 |.  .   .  
 |  .  ..
 |   .
 | .
 |.   . . .
 | . .  .
 |_  h
   ^

Waghei

If this is an omni-directional semi-variogram, then
what you have is a severe case of anisotropy probably
complicated by a strong trend. 

I would hazard a guess that you start to runout of
pairs of samples in one or more directions somewhere
around the ^ above.

Try constructing directional semi-variograms and
post-plotting the data to identify directional
differences.

Isobel Clark
http://uk.geocities.com/drisobelclark


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Re: AI-GEOSTATS:

2001-05-07 Thread Isobel Clark

Ian

The use of regression slope to measure kriging
efficiency or confidence in an estimate is spurious. 

The slope of the regression line has nothing to do
with the correlation between true value and estimated
value and everything to do with whether or not the
standard deviations of these two variables are
comparable. In effect, it is a measure of conditional
bias, not a measure of correlation. 

In fact, if you are using a least squares regression
on Normalised data, with the same units on both
variables, the standard deviation of the estimated
values would have to be lower than that of the true
values to obtain a slope as high as 0.9 -- because
least squares is minimising the vertical distance to
the line, not the 'true' distance to the line. 

Better to use the kriging variance for classification
needs. 

For example, you could insist that estimates for
(large) blocks of ground lie within a certain
confidence percentage of the true value. Companies
liek Anglo American use a criteria that the average of
the first year's production must be with 15% of the
true value at 90% confidence, before they will call it
measured.

Others companies (such as Iskor) use what we call the
ygiagam criterion:

Measured: where kriging variance is less than original
sample variance (total sill) less within block
variance. That is, an estimate can be placed on teh
block with more confidence than simply allocating a
regional average.

Indicated: within the range of influence of at least
four boreholes.

Inferred: anything the geologist thinks is there.

Hope this helps.
Isobel Clark
http://uk.geocities.com/drisobelclark


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Re: AI-GEOSTATS: The Estimation of Range paramter is very very big

2001-05-15 Thread Isobel Clark

Are you using some kind of automated fitting?

The results would suggest that the model is
inappropriate or that your basic assumptions are
inappropriate. You should look at how the models are
being fitted and what assumptions are made and
question everything.

Isobel Clark


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Re: AI-GEOSTATS: Choosing Lag Distance and Angular Tolerance

2001-05-15 Thread Isobel Clark

Andrew

You can apply 'standard' geostatistics if the
measurements are the 'average' (or some similar
feature) over an area. 

It makes interpeting the semi-variogram extremely
tricky if you combine many different sizes of sample,
but common sense is the main thing here. The trick is
to derive a point semi-variogram model from which any
size can be derived (see Chapter 3, Practical
Geostatistics 1979, downloadable free from Web,
http://uk.geocities.com/drisobelclark/practica.html)

Kriging is modified to reflect that the samples are
averages, mainly by changing the diagonal elements in
the equations so that they are non-zero. I don't know
any software package (off hand ) that does this,
though.

Isobel Clark



--- Andrew Mullens [EMAIL PROTECTED]
wrote:  I have a question relating to this question,
 certainly not to question the
 previous writer, it just seems like a good time to
 bring it up. Will
 variograming and other such techniques work for the
 data the previous writer
 described, e.g samples aren't at points, but areas
 (and areas that might
 have very little to do with the question). If they
 did use points in the
 calculations where would the points be placed, at
 the center of the county,
 at the major population center, at some arbitrary
 point (e.g most northerly
 point).
 
 I may be miss reading the description, perhaps the
 sample are point samples,
 but were taken with one sample in each county.
 
 Obviously the point samples are never really point
 sample, they must be
 taken over some area, approximating a point, but
 does this design seem to
 push the boundaries on that assumption.
 
 Andrew
 - Original Message -
 From: Yadollah Waghei [EMAIL PROTECTED]
 To: [EMAIL PROTECTED]
 Cc: [EMAIL PROTECTED];
 [EMAIL PROTECTED]; [EMAIL PROTECTED];
 [EMAIL PROTECTED]; [EMAIL PROTECTED];
 [EMAIL PROTECTED]
 Sent: Tuesday, May 15, 2001 7:33 AM
 Subject: AI-GEOSTATS: Choosing Lag Distance and
 Angular Tolerance
 
 
  Hello dears
  I have a spatial data set contaning n=262
 observarion (The variable of
 interest is Rate of Tuberculosis in 262 counties of
 Iran). I want to fit
 some models to Directional semi-variograms,and then
 build anisotropic
 semi-variogram.
  Then  questions are
  - Is there any rule for choosing Lag Distance and
 Angular Tolerance?
  -Also,how we can balance between Lag Distance and
 Angular Tolerance?
  -Do you agree that both must be very small,as
 possible?(Such that number
 of pairs in each lag20, for example)
 
  Thank you
  Yadollah Waghei
  Dep.of Biostatistics
  Tarbiat Modarres Univ.(Tehran)Po.Box: 14115-111
  Tel:8011001-3872  Fax:8007989
 

___
  Visit http://www.visto.com/info, your free
 web-based communications
 center.
  Visto.com. Life on the Dot.
 
 
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Re: AI-GEOSTATS: Number of data points Variograms

2001-05-15 Thread Isobel Clark

 My research is on heavy metal pollution in water
 bodies.

Hi, some thoughts (your numbering):

(1) One of the things I have found successful is the
following:
construct your semi-variogram using ALL of your
data but not allowing pairs between samples in
different water bodies;
use cross validation on each water body separately
to see if the 'generic' model works for all of them or
whether some are more variable or harder to predict
than others;
use the generic model for kriging with a
variance/sill scaled for each water body.

 Is there any consistent tested way to approach such
 'not-enough-data' situations?
Not really, but I have found this works if the
'deposition' is similar in the various bodies.

(2) 'Hot spots' are (a) erratic highs due to
distribution being skewed or (b) true outliers
(inhomogeneities). Which? Tackle accordingly. Cross
validation will pick up outliers but not work properly
if data is severely skewed.

 Could it be possible to effectively fit variograms,
 when the hot spots are present?
Try calculating semi-variograms with and without 'hot
spots' and see what happens.

Kriging is based on an assumption of homogeneity and
it is a little unfair to expect it to come back and
say that's a daft thing to do ;-)

 [ For most of the cases I tried with such suspected
 hotspot data, my results show that
 the linear interpolation works better than the
 krigged distribution based on the 'fitted' 
 variograms]
I find this statement interesting. How do you define
better -- prettier? nicer? easier to interpret? less
polluted?


Isobel Clark



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Re: AI-GEOSTATS:

2001-05-22 Thread Isobel Clark

Maybe I am being really dumb here, but why would you
bother to use a covariance function for an unbounded
semi-variogram?

Why not just use the semi-variogram form of kriging. I
always thought that was the whole point of using
semi-variograms instead of covariances -- because they
were more widely applicable.

Is it a software limitation for the package mentioned?
Isobel Clark


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Re: AI-GEOSTATS:

2001-05-23 Thread Isobel Clark

 It is well known that when inverting a
 matrix it is much better (for numerical reasons)
 that the higher values
 are on the diagonal and the lower values far off the
 diagonal. 
Have you not heard of pivoting? 

The computational problems of using a matrix based
on the semi-variogram rather than the covariance are
removed totally by putting the last equation first in
the matrix. Of course, this means you cannot use a
computational algorithm which demands a symmetric
matrix, but so what?

Alternatively, you pivot on the largest term in the
first equation, then the second etc. I did a lot of
experimentation with this around 15 years ago and
found that the two (covariance and semi-variogram)
sets of equations become identical after around the
second or third 'pivot'.

Please let us not confuse programming problems with
geostatistical problems. 

There are a lot of packages out there which ask you to
model the semi-variogram and then use a covariance for
kriging. There are a lot of packages out there which
model the semi-variogram and krige with the
semi-variogram. Are there main stream geostatistical
(as opposed to statistical or strict GIS) packages
which model the covariance? 

Isobel Clark
http://geoecosse.bizland.com


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Re: AI-GEOSTATS:

2001-05-23 Thread Isobel Clark

Excuse my persistence, but I think you are missing the
point here.

If you can produce a covariance function by
subtracting the semi-variogram from an arbitrary
constant AND if it makes no difference to the
resulting equations, you are simply constructing the
equations WITH the semi-variogram. Not so?

In which case, the necessity to provide a covariance
function is an artifact introduced by the way the
software package is set up and not a constraint
imposed by the kriging method.

My original question was whether this is a problem in
how the software was written, not a geostatistical
problem. Your answer is telling me yes, it is. Thank
you.

Isobel




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Re: AI-GEOSTATS:

2001-05-23 Thread Isobel Clark

Dear Denis

I am sorry you think that I am being agressive. I
thought I was being quite reasonable, but perception
is a subjective thing. I think it is important for
readers of this list to understand that there are
different ways of coming to the same answer and that
there are different opinions between people in that
field. I was also under the impression that the
purpose of this list is to promote free interchange of
information and opinions.

I have reached a stage in my life where I realise that
other people know much more than I do about many
things, including geostatistics. I joined the list --
as I go to conferences and read journals -- to find
out what other people have to say and to learn new
ways of seeing and doing.

Reading back through this thread of discussion, I am
reminded of the sort of conversations we have at
conferences. A little give-and-take is a valuable
thing provided the parties are actually listening to
one another and hearing what is said, rather than
taking comments personally.

You have every right to prefer LU decomposition and I,
for one, would never deny it to you. It is certainly
more efficient to solve a set of symmetric equations
with a method developed for exactly that purpose. What
I question is the assertion that it is the most
efficient way to tackle the kriging system -
especially if it involves introduction of arbitrary
constants chosen to ensure a positive covariance.
Covariances can be negative and, in the case of an
unbounded semi-variogram, presumably should go
negative at some point. 

Since the constant is an artifact and the equations
remain mathematically equivalent to using the
semi-variogram, my original question remains. Why
introduce a complication that is not necessary? 

Our opinions on this will always differ. It does not
matter because we still get the same answers in the
end. Surely that is the important fact here?

Isobel Clark
http://uk.geocities.com/drisobelclark

--- Denis ALLARD [EMAIL PROTECTED] wrote: 
Dear Isobel,
 
  Have you not heard of pivoting?
 
 I don't understand the point of being so agressive.
 Of course, you are not
 the only person in the geostat community who has
 heard of pivoting. It is
 standard math stuff for any 
 mathematician/statistician/engineer.
 
 But what is also standard math stuff is the well
 known fact that if you
 know that your matrix is symetric or def. pos., it
 is much more efficient
 to take advantages of the properties of you matrix.
 So yes, for
 computational efficiency I prefer to use some sort
 of LU decomp for which
 there are much less numerical instabilities if your
 matrix has the higher
 values on the diagonal. Now, if you don't believe
 me, have a look at the
 numerical receipes for instance.
 
 This computational trick is fully transparent for
 the user, and it must
 be so. I don't think that any of us confuses geostat
 and computations.
 
 Now, please try to be less agressive in a forum. Not
 being in full
 agreement with someone is normal in a scientific
 community (and in 
 fact in any community), do not take it personaly. 
 
 In your previous posts, I have seen a couple of
 assertions that were not 
 completely correct. Since this forum is read by many
 students, I believe
 that it is our duty to correct these assertions.
 Now, please do not take
 so agressively. It would much more in your honour to
 acknowledge the
 corrections.
 
 Regards,
 
 Denis Allard
 
 
 PS: about your last question, it is of course silly
 to model the
 covariance function, and I suspect that you know
 that very well
 
 
   It is well known that when inverting a
   matrix it is much better (for numerical reasons)
   that the higher values
   are on the diagonal and the lower values far off
 the
   diagonal. 
  Have you not heard of pivoting? 
  
  The computational problems of using a matrix
 based
  on the semi-variogram rather than the covariance
 are
  removed totally by putting the last equation first
 in
  the matrix. Of course, this means you cannot use a
  computational algorithm which demands a symmetric
  matrix, but so what?
  
  Alternatively, you pivot on the largest term in
 the
  first equation, then the second etc. I did a lot
 of
  experimentation with this around 15 years ago and
  found that the two (covariance and semi-variogram)
  sets of equations become identical after around
 the
  second or third 'pivot'.
  
  Please let us not confuse programming problems
 with
  geostatistical problems. 
  
  There are a lot of packages out there which ask
 you to
  model the semi-variogram and then use a covariance
 for
  kriging. There are a lot of packages out there
 which
  model the semi-variogram and krige with the
  semi-variogram. Are there main stream
 geostatistical
  (as opposed to statistical or strict GIS) packages
  which model the covariance? 
  
  Isobel Clark
  http://geoecosse.bizland.com
  
 


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Re: AI-GEOSTATS: entering the fray

2001-05-23 Thread Isobel Clark

Hi Yetta

Jump in, the water is lovely! All contributions
equally valid in my e-mail box ;-)

I have to confess that I have rarely used an unbounded
semi-variogram model. In mining applications, in my
experience (which is limited to 30 years in economic
mineralisations) semi-variograms which shoot off into
the wild blue yonder are usually caused by trend,
strong anisotropy or violation of the 'homogeneity'
assumptions (stuff like faults etc or skewed
distributions). 

However, the de Wijsian model is extremely popular in
Southern Africa and widely used by some major mining
houses along with simple kriging. Not my bag, but who
am I to judge?

There is an interesting paper by Cressie (not got
reference to hand, but it must be in his book
somewhere) where he treats the Wolfcamp data as an
anisotropic generalised linear model. I use a
quadratic trend surface and a spherical model for the
residuals. The final estimates are almost identical,
but the standard errors differ by an order of
magnitude. 

Actually, I used that as an example in a talk in
Ireland about 10 days ago. Noel is an archetypical
ivory tower academic (and all round good guy), so I
guess we did a bit of role reversal there ;-)

I agree that the semi-variogram approach is easier for
the non-statistician to grasp. Difference in value is
a simpler concept to grasp than cross-product,
especially when your boss wants to know the likely
difference between what you tell him and what really
happens!

Keep it coming. It is your voices we want to hear, not
us border line pensioners

Isobel Clark
http://uk.geocities.com/drisobelclark




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Re: AI-GEOSTATS:

2001-05-23 Thread Isobel Clark

Thank you, Marco! 

My point exactly.
Isobel


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Re: AI-GEOSTATS: Help

2001-06-21 Thread Isobel Clark

Davide

Unless you get software which allows you to code
samples by 'individual', the simplest way is to output
the calculated semi-variogram for each individual and
then use a spreadsheet to combine them, weighted by
the number of pairs in each case.

Isobel Clark
http://geoecosse.bizland.com


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Re: AI-GEOSTATS: Negative Kriging Weights Estimates

2001-08-07 Thread Isobel Clark

Colin

 Is my understanding of this compensation correct?
Exactly.

 Why wouldn't the weights for the furtherest samples
 be calculated by subtracting the weighting of the
 closer samples from 1, instead of compensating using
 negative weights afterwards?
I am not sure I understand your question. 

Kriging weights are produced by a set of equations
which minimise the variance of the estimation error. 

All of the weights are determined simultaneously and
negative weights can be produced in the solution of
the kriging equations. The condition on the weights is
that they sum to 1, not that they have to be positive.

Negative weights are usually an indication that your
data is clustered or that our search radius is larger
than it need be. Some packages will eliminate the
samples with negative weights and then re-solve the
kriging equations without them. Of course, you may
have to go round a few times as there is no guarantee
that the  new set won't have negative weights 

Isobel Clark
http:/uk.geocities.com/drisobelclark




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Re: AI-GEOSTATS: Samples in a block

2001-08-28 Thread Isobel Clark

 1. What is the optimum number of samples in a block
 of any particular size?
 
 Is there any way that I can work out the theoretical
 number of samples in an
 e.g. 30x30m block assuming some a priori information
 (gold deposit, high
 nugget of e.g. 1.2 e6, pop.var having the same type
 of magnitude etc) ?
This part I can answer on the general mailing list (I
think).

Use the free unlimited use downloadable Kriging Game
to be found on my pages at
http://uk.geocities.com/drisobelclark/briefcase.html

This package reads Geostokos type files, Geo-EAS type
files, CSVs dumped from spreadsheets or you can type
in data from the keyboard.

Comments and queries to me please.
Isobel Clark


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Re: AI-GEOSTATS: re: sampling

2001-08-29 Thread Isobel Clark

Hi folks

Numerous apologies to anyone who downloaded Krigame
over the last two days. The file got corrupted and
isn't actually kriging!!

New version now up.

Sorry sorry sorry
Isobel Clark

PS: on Mark Burnett's sampling thing. In South African
gold mining, they have 100 years of back sampling in
similar reefs (or parts of reefs). This helps a lot
for designing the 'coarse' sampling suggested by Jan
Willem and then developing reliable local models.


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Re: AI-GEOSTATS: Estimating the fixed Sill in the Elliptic Anisotropy

2001-09-04 Thread Isobel Clark

  How can we estimate Sill and Range in all
 directions by supposing that the sill is fixed?
It is usual to fit the sill to an omni-directional
semi-variogram graph, since that has most pairs on all
points.

The ranges can then be fitted individually.

The alternate is to 'contour' the experimental
semi-variograms in many directions and fit one
ellipoidal surface to the 'map'. 

Isobel



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Re: AI-GEOSTATS: samples with not normal distribution

2001-09-04 Thread Isobel Clark

What does your data look like after you take
logarithms? Is it still skewed? If you do a
probability plot does it drop off at the lower end? Or
at the top? or is it still curved? Or does it have a
kink in it?

Geostatistics is possible with any or all of the above
but the remedy differs according to your answers.

Isobel Clark


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Re: AI-GEOSTATS: Anisotropy with varying Range and Sill

2001-09-10 Thread Isobel Clark

Any basic Geostatistics book will show you models with
varying ranges and sills with direction.

Except mine. We believe that sill varying with
direction is a symptom of deeper problems such as
non-stationarity, trend, discontinuities, etc etc.

Isobel Clark
http://uk.geocities.com/drisobelclark


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Re: AI-GEOSTATS: Lognormal kriging and Back Transformation

2001-09-19 Thread Isobel Clark

Colin

As I already pointed out 

higher variance = higher lagrangian multiplier

so that some of the efect is cancelled out anyway.

We (Geostokos) use the following as a filter:

ygiagam (proven resource): kriging variance should be
less than original sample variance (total sill) less
within block variance

probable resource: kriging variance should be less
than twice the above and at least 4 samples should be
used in the estimation

These are fairly arbitrary but have proved sound over
the last 10-15 years.

Isobel 
http://uk.geocities.com/drisobelclark


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Re: AI-GEOSTATS: free spatial analysis software for graduate students

2001-10-03 Thread Isobel Clark

This sounds terrific!

I may be a little petty here but how come this is
accetable but when we talk about our totally freely
distributable teaching software, I get my knuckles
rapped?

Isobel Clark
http://uk.geocities.com/drisobelclark


 --- Dunrie Greiling [EMAIL PROTECTED] wrote: 
TerraSeer is offering 10 annual licenses of
 BoundarySeer 
  and ClusterSeer to outstanding graduate research
 proposals.
 
  TerraSeer will award a total of over $12,000 in
 software in
  a contest that will identify superlative research
 proposals 
  in environmental health, according to Nicholas
 Jacquez, 
  President of TerraSeer.   
 
  The identification of  health-environment
 relationships 
  from geographic data is recognized as one of
 the most 
  pressing problems facing environmental
 epidemiology, 
  medical geography and the environmental
 sciences. 
  This contest will foster top-quality research
 by putting 
  state-of-the-art tools in the hands of
 top-notch 
  researchers.  
 
  Dr. Geoff Jacquez, TerraSeer's Chief Scientist, is 
  organizing the group that will review the proposals
 and 
  make the awards.  
 
  We're drawing on some of the best scientific
 minds to 
  run the awards process.  I expect this contest
 to 
  identify and support some truly outstanding
 research 
  projects.  
 
  Research proposals shall be submitted through the 
  TerraSeer website and will be accepted through
 October 31, 
  2001. These projects will be expected to use the
 software 
  as part of the analysis. 
 
  Awards of TerraSeer software will be made in
 November. Stay 
  tuned to TerraScene for the results of the contest
 and 
  reports on the research. 
 
  Enter the contest or learn more at:
  http://www.terraseer.com/news/news_contest.html
 
  Learn more about BoundarySeer at:
  http://www.terraseer.com/boundaryseer.html
 
  Learn more about ClusterSeer at:
  http://www.terraseer.com/clusterseer.html
 
  Download your copy of the TerraSeer demo (featuring
  BoundarySeer and ClusterSeer plus sample analyses):
 
 
  http://www.terraseer.com/demo/terraseer_demo.html
 
 
 Thanks,
 Dunrie A. Greiling, Ph.D.
 [EMAIL PROTECTED]
 
 
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Re: AI-GEOSTATS: Negative variances

2001-11-02 Thread Isobel Clark

Kevin

There is something badly wrong with your software. 

With ordinary kriging, it is not possible to get
negative variances. 

With lognormal kriging, it is not possible to get
negative varianse or negative estimates unless you are
using a large additive constant.

Isobel Clark
http://uk.geocities.com/drisobelclark

 --- Kevin Lowe Rfn [EMAIL PROTECTED] wrote:  Hi
all
 
 I have been experimenting with various kriging
 methods in estimating
 Witwatersrand gold grades (South Africa) using
 Datamine software. I found
 that using lognormal ordinary kriging has resulted
 in negative variances in
 some blocks.
 
 My question is why does this happen and what is the
 significance of it?
 
 Kevin Lowe
 e-mail [EMAIL PROTECTED]
 
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Go to http://uk.yahoo.com/nokiagame/ and join the new
all media adventure before November 3rd.

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Re: AI-GEOSTATS: Declustering

2001-11-15 Thread Isobel Clark

 I would like to know what is the declustering, why
 we used this 
 method and how we proceed to decluster a set  of
 data?
If your data is clustered spatially (in location) this
may bias any histograms or probability plots which you
draw and, therefore, any conclusions you make about
what kind of distribution the values come from.

For example, in mining projects geologists tend to
drill a lot more holes in the good bits than the bad
bits. This means that a histogram contains a lot more
samples than it should in the higher end.

If you try to fit a model to such data, or use a
transform or 'anamorphosis' it will not really reflect
the values in the whole of the area. Backtransforms
will be biassed like the original samples.

Declustering is one way to get rid of the bias. There
are various ways to decluster but the most common ones
revolve around laying a grid of squares over your map
area and either (a) selecting one sample per square or
(b) averaging all the samples in each square. (b) is
not very sensible given what we are trying to do with
the data, but is very common (again) in mining. If you
use (a) it is a good idea to choose which sample to
'keep' in the histogram at random.

You may still use all of the clustered sampling for
geostatistical analysis, of course. The semi-variogram
and kriging techniques are not affected by clustering.
In fact, one of the main reasons for inventing kriging
was to make full use of every one of clustered and/or
preferentially sited sampling.

The term 'declustering' became popular around 1982/83
and is first used widely in the proceedings of the
geostatistical congress held at Lake Tahoe in
September 1983.

Isobel Clark
http://uk.geocities.com/drisobelclark

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RE: AI-GEOSTATS: Declustering

2001-11-16 Thread Isobel Clark

   I am slightly confused:
   ... if sampling is clustered preferentially in 
 e.g.  higher values
 areas, would this not bias the semi-variogram for
 the first few lags?...at
 least if, as  it can happen, the variance is related
 to the mean. 
The semi-variogram is calculated on the difference
between the two sample values. If the basic
assumptions for semi-variogram construction are
correct, differences are unrelated to the actual value
of each sample or to the actual absolute location of
the pair. Therefore, clustering does not influence the
semi-variogram.

If you have a situation where variance is related to
the mean, e.g. with highly skewed data, you need to
transform these values in some way before constructing
a semi-variogram. This is true whether or not you have
clustered sampling. Absolutely regular sampling will
not give you a valid semi-variogram if you violate the
assumptions upon which it is based. 

   What about the effects of the possible
 over-estimation of the global mean due to
clustering?
If you are estimating the global mean based on a
distribution model, you need to decluster. If you are
estimating the global meaning on the basis of a kriged
grid, you do not need to decluster as the kriging
system does that for you.

You can experiment with these questions using our
totally free unlimited kriging game. This can be found
in my 'briefcase' at
http://uk.geocities.com/drisobelclark/briefcase.html

Does this help?
Isobel Clark

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AI-GEOSTATS: Re: Kriging of multiple samples

2001-10-10 Thread Isobel Clark

If you have multipl esamples at certain locations,
what you can do is to modify the diagonal entry in
your kriging system. Instead of gamma(0)=0 put in
gamma(0)=(n-1)/n times nugget effect. This tells the
kriging system you have replicates and it will adjust
weights and optimal estimator accordingly.

This is documented in Matheron's original works.

Isobel Clark
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AI-GEOSTATS: viruses

2001-12-06 Thread Isobel Clark

Warning

If you get an empty e-mail with a return address which
starts with the underscore, delete it off your system
as quickly as you can.


Nokia 5510 looks weird sounds great. 
Go to http://uk.promotions.yahoo.com/nokia/ discover and win it! 
The competition ends 16 th of December 2001.

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Re: AI-GEOSTATS: Extreme values?

2001-12-13 Thread Isobel Clark

 My question is: How to deal with the
 extreme/outlying values in a data set?
The real priority is to establish why you have extreme
highs. For example:

(1) is there a high imprecision in measuring the
values, so that the sample observations are actually
inaccurate? If so, is it relative to the value or a
flat error?

(2) do you have a skewed distribution of values?

(3) do you have two (or more) populations, only one of
which gives the high values?

and there may be others. Once you determine the reason
for extreme values, then you can more objectively know
how to deal with them. 

For example, if you think (2) is most likely than look
at transformations or distribution-free approaches to
geostatistics. You can find some of my papers in
dealing with positivel skewed distributions at:

http://uk.geocities.com/drisobelclark/resume/Publications.html

If (3) is more likely - as may be probable is your are
looking at an area where samples may be 'background'
or 'contaminated' - you really need to identify the
populations first. Then you may be able to apply a
mixture model together with indicator geostatistical
approaches.

If (1) is your problem, then you may be able to use a
rough non-parametric approach to get to cross
validation. The 'error statistics' in a cross
validation exercise will often assist in identifying
erroneous sample measurements.

Hope this helps
Isobel Clark




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Re: AI-GEOSTATS: Search Strategy

2001-12-19 Thread Isobel Clark

Julhendra

That is what your semi-variogram is for. Determine
maximum distance and anisotropy (change with
direction) from your experimental semi-variograms.

Your search strategy should also change with the shape
of your blast layout. Single blast patterns are
usually 'long and thin', meaning that a circular
search would be less than optimal. I don't know of any
papers which discuss this, but you can see our
strategy in the kriging game. This is freely
downloadable at:

http://uk.geocities.com/drisobelclark/briefcase.html

and allows you to experiment with search patterns and
changes in semi-variogram model. It also allows you to
see the difference between kriging as a 'point'
estimation method (for mapping) and kriging an average
over a blast area. Unfortunately, this free package is
only 2d, but you may find it useful.

One other point you may find useful. In my experience,
working in 3d reduces to using the previous bench
blastholes. A full 3d approach is only useful if you
have good diamond or percussion drilling within the
search volume. If you are going to combine sampling
types, you need to determine whether the samples are
compatible or to use a co-kriging approach.

Isobel Clark



 --- Julhendra Solin [EMAIL PROTECTED] wrote:
 Dear All,
 
 I am working on blasthole interpolation in open pit
 mine. Interpolation
 using ordinary kriging and grades interpolated also 
 from above bench.
 Blasthole spacing about 10 m and bench height 15 m.
 Anybody could help me
 how to determine search distance and min/max of
 number of samples to krige
 the grade. May be some technical paper related to
 it.
 
 Thanks.
 
 Jul
 
 
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Re: AI-GEOSTATS: Dealing with Universal Kriging

2002-04-09 Thread Isobel Clark

Rubens 

Your approach has been long used in hydrology and
similar fields with much success.

The problem with the standard deviation is that it
does not include the the 'error' on the estimation of
the true drift. To get a composite error you would
either have to 

(a) add your kriging variance to some sort of
classical regression variance to get a composite one;

(b) use a Universal Kriging (or generalised
covariance) approach to estimate the surface with the
drift included.

In our experience, your estimated surface will not
change but your kriging variances will increase
slightly.

Isobel Clark

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RE: AI-GEOSTATS: Dealing with Universal Kriging

2002-04-10 Thread Isobel Clark

Alessandro

Thanks for the contribution. 

If Universal Kriging is applied, there is no need for
simulation or multi-indicator approaches to get a
standard error, it comes with the solution.

Isobel

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Re: AI-GEOSTATS: variogram at zero ( gamma(0) ) in the kriging

2002-04-28 Thread Isobel Clark

Jack

There is a schism in the geostatistical community
between those who do and those who don't make gamma(0)
equal to 0.

Some people argue that the nugget effect is 'sampling
error' and that gamma(0) should equal c0 so that
kriging does not honour the data values. It also makes
your kriging variances smaller (emphasis).

I (personally) find it a bit weird to have smaller
supposed errors if you do not trust your data.

Software packages differ as to whether they do or do
not go to zero. Simplest way to check is to replace
your nugget effect by a spherical component with a
very short range of influence and see if your answers
change. 

Isobel Clark
http://geoecosse.bizland.com/pg2000.htm

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AI-GEOSTATS: Risk Assessment with Gaussian Simulation?

2002-04-29 Thread Isobel Clark

My tuppence worth.

The major advantages of simulation as a risk
assessment tool lie in the cases where you are trying
to derive some conclusion from the data rather than
just look at the values themselves.

For example, see Bill and my papers at Battelle
Conference 1987 or the paper at the Geostat Avignon in
1988. There are oters. All of these are available in
Word format for download at my page
http://uk.geocities.com/drisobelclark/resume/Publications.html

We were trying to derive the travel path of a particle
given the pressure of fluid in an aquifer. Not a
linear transform by anyone's standards.

Isobel Clark

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Re: AI-GEOSTATS: Log transformation and zeros

2002-10-02 Thread Isobel Clark

Ernesto

There are several ways of tackling skewed data with
zeroes and I am sure you will get emails from
proponents of this or that other contributor.

Ways which I have found useful:

(1) try a lognormal probability plot and see whether
you have a straight line or if it drops off the line
at low values. This is indicative of a three parameter
lognormal distribution which needs an additive
constant. Find the additive constant that makes the
line straightest (my criterion) or the skewness
closest to zero (Sichel's recommendation). You can
find this described in my 1987 paper following
Sichel's definitive works. Full copy at
http://uk.geocities.com/drisobelclark/resume/Publications.html
{paper titled turning the tables

(2) treat the zeroes as a different population. Are
they zero because there are no fish there or because
you didn't catch any? If the later, use an indicator
approach to separate the 'no fish' population from the
'some fish' one. Then do your lognormal stuff on the
'some fish' and recombine for final results.

(3) - not so nice: use the probability plot as
suggested above to choose a 'threshhold' value to
replace the zeroes. This assumes that all areas
sampled are 'some fish' areas and you just didn't
catch any.

Isobel Clark
http://uk.geocities.com/geoecosse/news.html

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Re: AI-GEOSTATS: anisotropic nugget

2002-10-24 Thread Isobel Clark
There is software around which will allow you to
define different nugget effects in different
directions, but I would not put any bets on the
outcome!

It looks like you have a short range component which
cannot be seen because of the spacing of your data.
Try adding a spherical component with a shorter range
and a component sill of the right size to make the
nugget effect equal in all directions. I would.

Isobel Clark
http://geoecosse.bizland.com

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Re: AI-GEOSTATS: gaussian model

2002-11-04 Thread Isobel Clark
Carolina

The gaussian semi-variogram model is so-called because
the formula is basically identical to that for the 
Normal (or gaussian) probability distribution. 

There is no other necessary link with the Normal
distribution.

Isobel (Clark)
http://uk.geocities.com/geoecosse/news.html

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Re: AI-GEOSTATS: curve fitting summary

2002-11-21 Thread Isobel Clark
 To be a valid covariance function, it must be
 positive definite (as a function). In particular 
 this implies that the function is bounded 
 (hence no polynomials)
I hate to sound ignorant here, but aren't most of the
standard semi-variogram models polynomials of one kind
or another? 

I remember seeing a paper a few years ago by a coupl
eof blokes from Pretoria University on a generalised
polynomial fit which would be positive definite. I
don't have it to hand but can probably track it down
if given sufficient motivation ;-)

Isobel Clark
http://geoecosse.bizland.com/news.html

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Re: AI-GEOSTATS: Standard deviation, Variance

2002-12-05 Thread Isobel Clark
 The reason is simple and comprehensive
 
 Assume a population with ANY distribution of
 elements. Then randomly select
 a number of sample elements from the population to
 characterize the
 underlying population. That distribution of sample
 elements ALWAYS tends
 toward a normal [Gaussian] distribution. And the
 mean and standard deviation
 of the sample distribution are unbiased
 representations of the mean and
 standard deviation of the underlying population.
Things have obviously changed since I was a lad. I was
taught that the Central Limit Theorem was a theorem
NOT a law. There are distributions which do not
conform to this behaviour and (alas for us) the
lognormal is one of them.

The Central Limit theorem also does not apply to mixed
distributions or in cases of non-stationarity. Mind
you, neither does geostatistics

Isobel Clark
http://geoecosse.bizland.com/news.html

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Fwd: Re: AI-GEOSTATS: Standard deviation, Variance

2002-12-06 Thread Isobel Clark
Thank you
Isobel

 --- Donald E. Myers [EMAIL PROTECTED] wrote:
 Date: Fri, 06 Dec 2002 12:05:54 -0700
 From: Donald E. Myers [EMAIL PROTECTED]
 To: Isobel Clark [EMAIL PROTECTED]
 Subject: Re: AI-GEOSTATS: Standard deviation,
 Variance
 
 I stand corrected on mistakingly attributing the
 description of the 
 CLT to  you
 
 Donald Myers
 
 Isobel Clark wrote:
 
 Thanks to Rubén and Digby for pointing out what I
 had
 misunderstood about Don Myers' email.
 
 It had not occurred to me (duh) that the lines
 starting '' would be read as being from me rather
 than part of a forwarded email.
 
 Another score on the dumb side. Apologies for the
 strong reaction to Don's email if (on this
 occasion)
 he was not criticising my contribution.
 
 Isobel
 
 http://uk.geocities.com/drisobelclark
 
 
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Re: AI-GEOSTATS: Calculating averages

2003-01-05 Thread Isobel Clark
Hi Craig

The average of a product will only equal the product
of the averages if the two numbers are completely
independent of one another.

This is exactly analogous to the calculation of a
covariance in statistics.

Isobel
http://uk.geocities.com/drisobelclark

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Re: AI-GEOSTATS: KRIGING EVALUATION

2003-01-21 Thread Isobel Clark
Fabrizio 

If you want to limit your estimates by kriging
variance, the obvious place to stop would be where the
kriging variance becomes equal to the total sill on
your semi-variogram (if you have one) or to the
estimated population variance for your sample values.

A kriging variance above this value, basically, says
that your estimate is a worse estimator than just
using the population mean.

Isobel Clark
http://geoecosse.bizland.com/news.html

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Re: AI-GEOSTATS: Kriging Error vs variance

2003-01-27 Thread Isobel Clark
Russell

Absolutely on the spot.

We call this the 'ygiagam' criterion (your guess is as
good as mine) ;-)

Isobel Clark
http://geoecosse.bizland.com/news.html

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Re: AI-GEOSTATS: Observations with a known standard deviation

2003-01-30 Thread Isobel Clark
Soeren

I presume what you have is a sort of 'analytical
error' for each sample? That is, the standard
deviation for two samples at the same location around
the 'true value' at the same location? 

In this case, you can put the variance down the
diagonal of your kriging system to obtain optimal
weights under the uncertainty admitted for your data
values. 

You would need to be careful that the 'analytical
variance' was not greater than the nugget effect of
the semi-variogram model. 

The kriging system would be similar to that obtained
when the sample is not treated as a 'point', but
rather as a volume. This results in a lower kriging
variance than using zero on the diagonal, so to
compensate you should probably add the complete
'analytical variance' back on to get realistic
estimation variances.

There seems to be a lot of confusion in the books (and
software) about what happens if you have a significant
replication variance. 

Isobel Clark
http://geoecosse.bizland.com/news.html



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Re: AI-GEOSTATS: Question about Block Lognormal Kriging.

2003-02-05 Thread Isobel Clark
Adrian

I don't do simple kriging, but both forms of the
complete backtransform are available in the papers
presented at Geocongress 1998 and Pribram 1999. These
are available at 

http://uk.geocities.com/drisobelclark/resume/Publications.html

If you have any problems downloading, let me know.
Isobel Clark
http://geoecosse.bizland.com/news.html


 --- Adrian_Martínez_Vargas [EMAIL PROTECTED]
wrote:   
 Question about Block Lognormal Kriging.
  
 For the Point Lognormal Kriging the unbiased
 estimator of z* is
  
 z*(u)=exp[y*(u) + SigmaSK^2(u)/2]
  
 where:  SigmaSK^2 simple lognormal kriging
 variante 
  
 how to get and unbiased estimator for:
 a)  Simple Block Lognormal Kriging.
 b)  Ordinary Block Lognormal Kriging.
 c)  Ordinary Point Lognormal Kriging.


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Re: AI-GEOSTATS: Estimation of the cross semivariogram

2003-02-14 Thread Isobel Clark
Soeren

What you have here is sometimes known as a co-located
cross semi-variogram and only pairs of samples with
both variables can be included in its calculation.

There is a non-co-located semi-variogram (see
Cressie's book for example) which looks like

gamma(h)=1/2N(h)*sum((z_i-y_j^2)

This works best if the variables are standardised
(same mean, same standard deviation) and uses all of
the samples with either variable.

Isobel Clark
http://geoecosse.bizland.com/news.html


 --- Soeren Nymand Lophaven [EMAIL PROTECTED] wrote: 
Dear list
 
 I have a question regarding estimation of the cross
 semivariogram,
 given by:
 
 gamma(h)=1/2N(h)*sum((z_i-z_j)(y_i-y_j))
 
 where y and z are the two variables. My question
 simply is: Do y and z
 have to be measured at the same locations in order
 to estimate the cross
 semivariogram ??  
 
 Best regards / Venlig hilsen 
 
 Søren Lophaven

**
 Master of Science in Engineering|  Ph.D.
 student
 Informatics and Mathematical Modelling  |  Building
 321, Room 011
 Technical University of Denmark |  2800 kgs.
 Lyngby, Denmark
 E-mail: [EMAIL PROTECTED]  | 
 http://www.imm.dtu.dk/~snl
 Telephone: +45 45253419 |

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Re: AI-GEOSTATS: Variograms models

2003-02-19 Thread Isobel Clark
Matheron used the term spherical to describe the
semi-variogram model which represents the concept of
two overlapping 'spheres of influence'. The formula is
actually the geometric calculation of the amount by
which two spheres of diameter 'a' (range of influence)
do NOT overlap when their centres are separated by a
given distance.

The exponential model contains an exponential term and
is exactly equivalent to the 'exponential decay'
beloved of economists and other predicters.

BTW: the Gaussian is so-called simply because it is
the same shape as a Normal cumulative frequency plot
(ogive). 

Isobel Clark
http://uk.geocities.com/drisobelclark/resume/Publications.html



 --- Serele, Charles [EMAIL PROTECTED]
wrote:  Hi all,
 
 Does anyboby can explain to me the origin of the
 variogram models: spherical
 and exponential ? Why the names spherical and
 exponential ?
 
 Sincerely
 
 Charles


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Re: AI-GEOSTATS: Cross variogram

2003-03-14 Thread Isobel Clark
Digby

That is the 'traditional' cross semi-variogram as
discussed in Matheron's original work. Now also known
as a co-located cross semi-variogram.

There is a non-co-located cross semi-variogram which
goes something like:

gamma(h)=1/2N(h) SUMi,j(vi-uj)^2

which is always positive. However, you probably have
to standardise u and v to get meaningful results
(which you can't really do with skewed data).

Noel Cressie has shown in  a paper in Math Geol that a
semi-variogram calculated on logarithms is the same
generically as a general relative semi-variogram.

I should think that conclusion probably holds for
cross semi-variograms too. Calculating on logarithms
is computationally simpler than calculating a relative
semi-variogram.

Isobel Clark
http://uk.geocities.com/drisobelclark

 --- Digby Millikan [EMAIL PROTECTED] wrote: 
Hello everyone,
  The forumlea which I have obtained for the cross
 variogram is;
 
  gamma(h)=1/2N(h) SUMi,j(vi-vj)(ui-uj)
 
  Is it correct then that the product of the
 differences can be negative in
 cases. 
 
 Digby


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Re: AI-GEOSTATS: large error correlation coefficient?

2003-06-15 Thread Isobel Clark
 I have performed a jacknife estimation of e variable
 V1* in a 3D space, the reference file have the true
 values  of  V1. Then I get the local error as
 ERR=V1-V1*. The problem is that correlation
 coefficient have large values for V1 and the other
 variables (0.7-0.9) and by theory the error must to
 be independent of the V1.
Sorry, that's not true. The error is independent of
V1* but never of V1, especially if you are using a
linear estimator such as kriging.

 Why it happen, it is really  dangerous in resource
 estimation?
This is known as conditional bias and, in short, YES!

This effect has been documented for 50 years and has
variously been known as the regression effect, the
mine call factor, the volume/variance effect,
conditional bias and many other things (not all of
them polite!).

Isobel Clark
http://geoecosse.bizland.com/whatsnew.htm


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Re: AI-GEOSTATS: bounds of IK variograms

2003-06-16 Thread Isobel Clark
Jörg

Don't confuse indicator variables with classical
correlation coefficients. 

The maximum possible on your semi-variogram will be
where all differences are 1. That is every pair is
(1-0). And, of course, divided by 2. So the absolute
maximum an indicator semi-variogram can show is 0.5. 

Computationally then, if 90% of your data are 1s and
10% are zeroes, the semi-variogram can still
(theoretically) reach 0.5 if the 90% are all clustered
and the 10% are, say, peripheral.

Isobel
http://uk.geocities.com/drisobelclark


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Re: AI-GEOSTATS: global vs local ordinary kriging

2003-07-08 Thread Isobel Clark
Ulrich

Depends how powerful your computer is, what algorithm
you use to solve equations and how many data you have.

Isobel
http://geoecosse.bizland.com/0toKriging.htm


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Re: [AI-GEOSTATS: global vs local ordinary kriging]

2003-07-11 Thread Isobel Clark
Maybe it is worth pointing out that Ordinary Kriging
with a 'global neighbourhood' (using all the points in
simple speak) is the same as Simple Kriging with a
neighbourhood which extends to the range of influence
of the semi-variogram model (if any). 

Given this fact, you would be computationally safer to
do Simple Kriging - otherwise known as kriging with
known mean and saving yourself the problems of
enormous and sparse matrix solutions.

The only overhead to Simple Kriging is producing a
reliable estimate of the global mean and, to be
realistic, a standard error associated with it.

Isobel Clark
http://geoecosse.bizland.com/courses.htm


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Re: AI-GEOSTATS: Log-normal back transform in Webster Oliver

2003-07-28 Thread Isobel Clark
Gregoire

Thank you for pointing out the lognormal section in
Webster  Oliver. I must confess I hadn't got round to
looking at it in detail.

Their simplification of the lognormal variance is
based on the assumptions (see p.179) that:

(a) the lagrangian multiplier would be close to zero
if the mean is well known
(b) the simple kriging weights would sum close to one
if the data is dense enough

The assumption (a) is one which has also been asserted
by Peter Dowd in some of his publications. 

From practical experience (over 30 years) we find that
the lagrangian multiplier is seldom close to zero and,
in fact, where data is dense will tend to be large and
negative.

We have also done some fairly intensive practical
studies of simple kriging and found that, where data
is dense, the kriging weights will tend to be very
much greater than 1 so that the wieght applied to the
known mean will be large and negative. Where data is
sparse, weights sum to very much less than 1 so that
poorly sampled areas are allocated the 'global' mean. 

Equations 8.35 and 8.39 rely on these assumptions and
the implicit one that the only difference between the
variance of the real values and that of the estimates
is due to the simple kriging variance (i.e. no
condiitonal bias). It has been asserted by several
authors that simple kriging corrects for conditional
bias. Would that that was true!!

Equation 8.36 for ordinary kriging is correct, but we
prefer to use Sichel's proper lognormal confidence
intervals rather than back-transform the variance as
shown in equation 8.37. To use this form you would
have to assume that your errors were Normal even
though your data was lognormal.

I think there is a typo in equation 8.38 and the
subscript 'Y' should be 'SK' to bring it into line
with the other formulae.

The definitive math on the lognormal backtransform can
be found in Noel Cressie's book in equation 3.2.40
(for both types of kriging). Simpler explanations of
the same form can be found in some of my papers at
http://uk.geocities.com/drisobelclark/resume/Publications.html
(note the capital P and look for papers in the second
half of the 1990s).

Isobel Clark
http://geoecosse.bizland.com/whatsnew.htm


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Re: AI-GEOSTATS: stratified kriging

2003-08-04 Thread Isobel Clark
Oliver

We have had some success with 'modelling' stuff like
soil types using indicator variables. This gives you a
'probability' map as to whether or not you are in a
particular soil type (or whatever) which you could
then use to modify the inclusion (or perhaps the
weighting?) of your samples when kriging. 

Isobel
http://ecosse.ontheweb.com




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Re: AI-GEOSTATS: Simulation and trends

2003-08-06 Thread Isobel Clark
Chris

Could I be incredibly obvious and suggest that, if you
use Universal Kriging, the trend is fitted and
simulated automatically with SGS. This is one of the
major advantages of SGS over approaches like Turning
Bands or Monte-Carlo -- if you can krige it, you can
simulate it.

There is a lot of evidence in the literature, dating
back to the early '80s that kriging residuals and
adding back the trend gives you pretty much the same
estimated surface as Universal Kriging. However, what
it doesn't do is give you the right standard error
since it doesn't allow for the trend fitting error. So
I would hazard a guess that simulations done this way
would underestimate the 'true' variability.

Isobel {Clark}
http://drisobelclark.ontheweb.com

PS: could I take this opportunity to remind anyone
interested that the IAMG 2003 is rapidly approaching.
If you haven't registered yet, sort yourself out at
http://www.iamg2003.com or follow the links from our
page at http://ecosse.ontheweb.com/whatsnew.htm 


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Re: AI-GEOSTATS: Simulation and trends

2003-08-14 Thread Isobel Clark
Adrian

Thank you for the reminder of one of the strengths of
Turning Bands. Certainly I have no argument with your
points. However Chris' question was about how to
include trend in SGS and that is what my answer is
about.

Isobel
http://ecosse.ontheweb.com


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Re: AI-GEOSTATS: values normalisation with a lot of zero!

2003-08-20 Thread Isobel Clark
 I can't make
 a transformation by log(x+1) because the result
 should be the same!!
I don't understand your point here about the additive
constant. 

You also have to be careful with regressions on log
transforms because the 'back transform' is not simply
take the anti-log and subtract the added constant.

Isobel Clark
http://ecosse.ontheweb.com/whatsnew.htm


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AI-GEOSTATS: Jackknife Literature Source

2003-09-01 Thread Isobel Clark
Peter

May I suggest Noel Cressie's book Statistics for
Spatial Data (Wiley). He has extensive discussion of
jack knives, bootstraps and such like and an extensive
bibliography.

Isobel Clark
http://geoecosse.bizland.com/whatsnew.htm


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Re: AI-GEOSTATS: Lag - Distance, Variogram / Semivariogram

2003-09-04 Thread Isobel Clark
Ursula

 5.5 x 20 metres 
 Choosing a 5 metres lag, the variance
 values are too high in the first 3 -4 lags.
This is possibly because you have some competition
effect between orchids.

For a square grid, we usually recommend an interval
20% of the grid spacing, so you don't get diagonals
lumped in with 'straight' directions. This would
suggest that you should try a 1 metre lag, which is
probably overkill. 

The other alternative is to construct directional
semi-variograms and specify the correct lag for each
direction, to see what differences you get.

 My second question is what is the difference between
 a variogram and a semivariogram ? 
As a general rule a variogram is a semi-variogram
constructed by someone lax in their terminology. No
software I know calculates the true variogram (twice
the semi-variogram).

The correlogram is simply the semi-variogram upside
down and standardised to vary between -1 and +1. The
disadvantage of this approach (or the covariance
function is that it is difficult to assess the nugget
effect accurately.

You should be concerned about your variance as it
provides essential information about teh variability
of your phenomenon.

Isobel Clark
http://ecosse.ontheweb.com/whatsnew.htm


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Re: AI-GEOSTATS: bad regression between predicted and measured

2003-10-13 Thread Isobel Clark
Duccio

There are many reasons why your interpolations may not
be working. A few of these are:

# you are beyond the range of influence of any
distance relationship, that is you have too widely
spaced sampling.

# your data may have a skewed or other non-Gaussian
distribution which makes both semi-variogram and
correlation calculations invalid

# you may have discontinuities, trends or anisotropies
which have not been factored into your model

Isobel
http://drisobelclark.ontheweb.com


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Re: AI-GEOSTATS: Kt estimation variance

2003-10-24 Thread Isobel Clark
Sebastiano 

Large kriging variances have nothing to do with
negative weights. The two are completely different
phenomena - especially in Universal Kriging. 

In Ordinary Kriging the estimation variance can become
as high as two times the total sill of the
semi-variogram. This is a theoretical fact(?) and you
can derive the answer by simply trying to estimate the
value at one point from a single sample at or beyond
the range of influence from this location. That is, a
weight of +1!!

In Universal Kriging, the weights often become
negative because the system is trying to force the
estimated point to lie on the trend of the samples.
Sometimes it can only do this by using negative
weights. There is no problem here, unless you have
extremely high 'erratic' residuals. In this case, you
should probably resolve that problem before trying
kriging. 

If the variance becomes very high in Universal Kriging
it is probably because you are extrapolating into
sparsely sampled areas. Remember you are trying to
estimate the trend as well as the 'residual' value and
this contributes to higher variances. You should widen
your search radius to include more samples than with
Ordinary Kriging. 

You can see how all this works with our free kriging
game. If your data is in Geo-EAS form or a simple CSV
file, you can read it into Krigame and see the
equations and the solutions. Then vary search
parameters etc to see how they are affected. You might
want to download our Tutorial 3 which discusses
Universal Kriging with the Wolfcamp data.

All available at
http://geoecosse.bizland.com/softwares with no
restriction on use or distribution.

Isobel


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AI-GEOSTATS: Nugget to Sill Ratio

2003-10-30 Thread Isobel Clark
Jul

The nugget effect is the (semi) variance between two
samples which might be taken at almost exactly the
same spot. Or, expressed otherwise, the variance of
replicated samples.

The total sill is the variance of values within your
data set (or, more strictly, within all possible
samples).

Thus the nugget to not-nugget ratio is the proportion
of the variation you can expect to predict with a
spatial model, whilst the nugget part is that
variation you cannot predict no matter how closely you
sample.

Isobel
http://geoecosse.bizland.com/books.htm




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AI-GEOSTATS: Re: co-kriging on data with spatial trends

2003-11-27 Thread Isobel Clark
Sigrun 

Calculating of cross semi-variograms has to be done on
residuals if there is a trend, just like any single
variable semi-variogram. You might find our MUCK
papers useful, as we were co-kriging two variables
both with trend back when we first started in the
1980s. You can find our papers at
http://uk.geocities.com/drisobelclark/resume/Publications.html
(note the capital P).

Your other question about search radii. When trend is
present, you need to enlarge your search radius past
the range of influence to get enough samples to
condition the equations properly - that is, to solve
for the trend as well as the weights. You can see how
this works with uor kriging game, free to all at
http://geoecosse.bizland.com/softwares

Hope this helps
Isobel [Clark]


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Re: AI-GEOSTATS: Moran scatterplot

2003-11-28 Thread Isobel Clark
Monica

The simplest solution to your problem is to use
probability paper. If you do not have easy access to
this, you can download a free graph paper plotter from
http://perso.easynet.fr/~philimar

There are also simple algorithms to produce your own. 

Two populations show up on a probability plot as a
line with a definite 'kink' in it. Skewed
distributions should be plotted on a logarithmic
scale.

Explanations can be found in my paper ROKE paper (CG
1977) which is computer oriented or in my IMGC paper
(1993). Both downloadable from
http://uk.geocities.com/drisobelclark/resume/Publications.html

Isobel


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Re: AI-GEOSTATS: log-normal kriging error

2003-12-03 Thread Isobel Clark
Marta

I am not familiar with the software you are using, but
it looks like your lognormal standard errors are being
back-transformed into 'raw' units. If this is the case
part of the backtransform is to multiply the 'relative
standard error' by the actual value of the estimate.

That is, if your estimate is 0.52, the backtransformed
standard error is multiplied by 0.52. If the estimate
is 520, it is multiplied by 520. If you do a ratio
between the standard error and the estimate, you will
probably get equivalent 'relative' errors.

We find it better to leave the standard errors in
logarithms and use Sichel type confidence interval,
using the lognormal model. 

Isobel
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AI-GEOSTATS: Re: sparse data problem

2003-12-05 Thread Isobel Clark
Everybody (especially Gali!)

Just to put the base case in perspective. Many
half-billion dollar projects in Southern Africa have
been evaluated and floated on the stock exchange on
the basis of 5 or 6 holes. When a sample costs a
couple of million dollars to acquire, there is little
point in hoping for more.

We use an extremely well sampled case in our (free)
tutorial analyses. Look for the GASA data which has 27
samples. An embarrassement of riches in the mid-1980s,
I can assure you. 

Isobel Clark
http://geoecosse.bizland.com/softwares


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AI-GEOSTATS: basic theoretical question

2003-12-16 Thread Isobel Clark
Hi Koen

Firstly, I have to tell you that many people would
kill for the type of data you have - it is absolutely
ideal for trying out a geostatistical approach.

Secondly, can I suggest that you work through our free
tutorials - especially Tutorials 2 and 3 - which can
be downloaded from
http://geoecosse.bizland.com/softwares in Word format.
If you need pdf or some other format, please let us
know. These Tutorials take you from first look at data
through to kriging in a fairly straightforward manner
with a tutorial data set (which is also downloadable).

Please let me know if you have any problems with this,
or further questions.

Isobel [Clark]
http://geoecosse.bizland.com/whatsnew.htm 



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Re: AI-GEOSTATS: maximum kriging variance with standardized sill

2003-12-17 Thread Isobel Clark
 is it right to assume the maximum kriging variance
 to be =2 when using a
 variogram with a standardized sill of 1 ??
Yes, if you are estimating the value at a point from
only one sample which is outside its range of
influence.

Isobel
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Re: AI-GEOSTATS: Hypothesis Testing in a Spatial Framework

2003-12-20 Thread Isobel Clark
Warren

We have had some success with a sort of hypothesis
test in this regard. I had a task some years back to
prove that the first area mined in a deposit was not
significantly lower than could be expected by chance
selection.

We used a combination between 'between block variance'
and a sort of cutoff analysis. It helps if your
samples have a simple distribution like Normal or
lognormal. Basically, you work out the probability
that a block of a certain size would have a value that
low (in our case). It is, effectively, a simple
application of volume/variance. Chapter 3 in my 'old'
book which can be read (or downloaded) at
http://uk.geocities.com/practica.htm

Isobel


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AI-GEOSTATS: Re: Rules

2004-02-06 Thread Isobel Clark
Dear Gregoire (and everyone else)

I did not consider my contribution to be an advert but
a public information notice. 

Readers such as Michele Scardi who see this as cheap
advertising, attribute me with far more subtlety than
I actually possess. 

The tolerance of our readers seems to stretch to
endless user support for GSTAT/R etc and for other
people promoting conferences and courses - most recent
example being Gina Clemmer
[EMAIL PROTECTED] who placed a formal
advertisement for Mapping Los Angeles: An
Introduction to GIS on 28th January 2004 without a
single indignant comment from any member of the list. 

Isobel Clark
http://geoecosse.bizland.com/whatsnew.htm







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Re: AI-GEOSTATS: Re: polygon kriging

2004-02-22 Thread Isobel Clark
Chaosheng 

This is very true that if you grid a grid of points
inside a polygonal area then average them, you get
exactly the same answer as if you kriged the polygon
average directly.

The differences are two:

(1) you have to do at least 64 krigings to get within
1% of the correct average answer (see my paper at the
first Geostat Congress in 1975)

(2) if you do one kriging for the polygon average, you
get the kriging variance for the polygon average. You
can derive this from the discretised point kriging
variances but you have to do even more work (64
squared) than in (1).

Isobel
http://geoecosse.bizland.com/whatsnew.htm





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Re: AI-GEOSTATS: modelling_dem_point

2004-02-25 Thread Isobel Clark
Ines 

It isn't usually a good idea to go pushing your data
to where you would like them to be. A good way to
determine natural spacing is to carry out a 'nearest
neighbour' analysis.

If data are on a grid, the best spacing is 0.2 times
grid size. This keeps single grid spacing separate
from single diagonal spacing and so on.

Isobel
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AI-GEOSTATS: Re: average semi-variogram

2004-03-01 Thread Isobel Clark
Koen 

 I think it's called a block to block variogram
 average, not sure.
It is called the within block variance. Block to
block variance is the variance between block averages
- i.e. from block to block.

 As I explained, I'm looking for an easy way to
 estimate the gamma(V,V) value.
If you have a standard semi-variogram model such as
the spherical or exponential, the mathematical
formulae for two dimensional blocks are published in
various issues of Computers and Geosciences. Point
approximations are only necessary if you have a
non-readitional model or rotational geometric
anisotropy.

 I used matlab to code for the distances between
 pairs but, it takes so much time compared to .
Most software packages use the symmetry of the block
so that only about one-quarter of the calculation need
to be carried out. 

You can get the within block variance from our kriging
game for all the models we cover. It is written onto
the screen and the ghost file as you work. Just select
the option to estimate a rectangular block.

http://geoecosse.bizland.com/softwares

Isobel





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AI-GEOSTATS: Re: mixtures of populations

2004-03-09 Thread Isobel Clark
Hello All

The common 'Normal Score' transform assumes one
population. Transformations such as rank or logarithm
do not assume one population. 

The best way to identify likely mixtures is with
programs such as Peter MacDonald's Mix (cited in
Ruben's email I think): 

http://www.math.mcmaster.ca/peter/mix/mix31.html

or with probability plots. Many software packages have
these and mixtures are easily identifiable by
break-points or points of inflexion in the plot.

For those (like myself) without easy access to
libraries, there are a couple of papers which describe
(geological) applications and using a combination of
indicator and ordinary kriging to solve some problems.


Papers can be found at
http://uk.geocities.com/drisobelclark/resume
follow the publications link. Look for my 1974 paper,
now available in pdf format, the 1993 IMGC paper and
the 1992 Troia paper with Jonathan Vieler. 

We have had good experience with this approach for 30
years in fields as diverse as mineral resource
estimation and seabird preservation. 

Isobel Clark
http://geoecosse.bizland.com/courses.htm







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AI-GEOSTATS: Re: mixtures of populations

2004-03-09 Thread Isobel Clark
AH me, the English language slips away from me again.

I said that the PRESENCE {pardon the capitals, no way
to italicise email} of more than one population is
indicated by the points of inflexion on the
probability plot. Not that these were breakpoints
between populations.

Normal (or lognormal) populations overlap. The break
point in the probability plot allows us to distinguish
between data which are skewed and multiple
populations. Skewed data give curved probability
plots. Mixtures of populations give plots with abrupt
changes in slope. These are very rarely equivalent to
'equal probability' points - that is, statistical
break points between the population. But, they are a
good place to start looking ;-)

Once you have deduced that multiple populations are
present there are lots of things you can do, including
simple stuff like post-plotting an indicator transform
of the data at various threshholds just to see if
there is any spatial pattern obvious to the naked eye.

In many cases, ordinary kriging can proceed even with
a mixture, since it only requires second-order
stationarity not the existance of one single
population.

In 34 years of searching, I have never seen a
probability plot with breakpoint(s) which did not have
a matching multiple population explanation. The number
of times I have argued with a 'customer' about this is
legion. In some cases, we have found more populations
than expected (witness my 1993 IGMC paper). 

In environmental studies, as in many geological
situations, one would normally expect a broad
background population of readings with the 'pollution'
showing as a more cohesive, generally higher valued
overlying one. Where both exist in the same locality,
it is often difficult to separate them in the data set
because you need both to characterise that area. This
is the case where you would co-krige an indicator and
two populations to get one estimate. 

Peter MacDonald's work is pretty definitive in North
America and his MIX program for separating a histogram
out into components has been around for 30 years, to
my knowledge (I met him in 1976 at a Biometrics
Congress!). 

There is a great monograph by Alistair Sinclair called
Application of Probability Plots in Mineral
Exploration which costs around $10 from the
Association of Exploration Geochemists and was first
published about 30 years ago. The task of identifying
mineral targets is very like that of identifying
pollution sources or other types of 'secondary'
populations. 

It is much better to identify multiple populations
from other knwledge of the site, but this is not
always possible. If you don't know whether or not you
have a mixture, statistical plots are one way of
checking - and very quick and easy to produce
nowadays.  I am open to any other suggestions on how
to identify multiple populations when all you have is
the sample data. 

Isobel Clark
http://uk.geocities.com/drisobelclark





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Re: [ai-geostats] problem regarding variogram

2004-06-07 Thread Isobel Clark
snehamoy 

when you say positively skewed do you mean skewed to
the left or to the right. If you calculate the
skewness coefficient, postive is skewed to the left
with a long tail to the right. If your data is skewed
to the right, it is negatively skewed.

For negative skewness, we have had success with
subtracting limestone values from the maximum
chemically possible Ca content. Then using a lognormal
approach. That is take 58(?)-Ca and then take logs. If
you have a variance of 140, you didn't take logarithms
yet.

Your variance should be the same whether you do the
linear transform or not, only the logarithmic or other
non-linear transformation would change the variance.


Can you clarify?
Isobel
http://geoecosse.bizland.com/course_brochure.htm






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[ai-geostats] Re: kriging proportions

2004-06-10 Thread Isobel Clark
Marc-Olivier 

The simplest solution - in the sense that most
packages could handle it - is to carry out a 'nested'
indicator analysis.

That is:

(i) code one of your particle classes as '1' and all
other as '0', produce a map of proportion of this
class.

(ii) remove this particle class from your data. Code
the next class as 1 and all others as 0. produce a map
of the proportion of this class, given that it is not
in the first class. The 'actual' proportion is then
P(ii)*(1-P(i)).

(iii) If you have more than three classes, you can
keep nesting although you tend to run out of data
pretty fast. The last class has whatever proportion is
left.

Proportions such as this which have to add up to 1 or
100% have been the subject of a lot of study,
particularly by people such as Vera Pawlowsky-Glahn
under the title 'compositional data'.

Isobel
http://geoecosse.bizland.com/BYOGeostats.htm





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Re: [ai-geostats] variograms

2004-07-08 Thread Isobel Clark
Salah

If your data is irregularly spaced, then you need to
experiment with 'lag' intervals to balance between 

(a) getting enough points to see the shape of the
graph and 

(b) getting enough pairs in each point to have some
confidence in it.

Remember that each point on your graph is an estimate
of a variance. Some books give hard-and-fast rules
like you have to have 25 pairs in each point but,
personally, I think this is fatuous. The real
situation is a bit circular -- if you have a regular
phenomenon, you can get the shape with few samples and
few points; if you have an erratic phenomenon you need
many samples and lots of points. 

Over the years, I have found the folowing useful:

i) look at the 'nearest neighbour' or inter-sample
distances to see what the 'natural' spacing in your
data is. 

ii) Use that to guide your first choice for lag
interval and experiment around that distance.

iii) Use the Cressie goodness of fit statistic to help
you judge the fit of your model.

iv) Use cross validation to help you judge the fit of
the model and the behaviour of the kriging errors.

If your data is on a grid, life is a lot easier, just
use 1/5th of the grid spacing as your lag interval.

The usual rule of thumb on number of lags is not to go
more than half the extent of your study area. That is,
if your study area is 1km on a side, construct your
semi-variogram to a maximum of 500 metres.

Hope this helps
Isobel

http://geoecosse.bizland.com/whatsnew.htm





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[ai-geostats] Re: Kriging Small Blocks

2004-07-19 Thread Isobel Clark
Jul

The warning about kriging small blocks is about
small relative to the sampling density. For example,
less than about one-third of the grid spacing. 

The warning is the same as the one about 'point'
kriging (mapping) The map is too smooth - or, at
least, a lot smoother than the real surface would be.
High value areas will be under-estimated and low value
areas will be over-estimated.

If your objective in kriging is to obtain general maps
of an area with an idea of where the highs and lows
are, then ordinary kriging is sufficient. The over-
and under- estimations cancel out on average.

In mining applications, where block kriging
originated, most applications require a 'cutoff',
where values below a certain value are not included in
the 'plan'. In this case, mapping or estimating small
blocks will result in an over-estimation of 'payable'
ground and an under-estimation in average value.

In pollution or environmental applications, the areas
at risk will be under-estimated as will the true
toxicity or risk factors.

There are two major ways round this problem:

(1) use a non-linear kriging approach such as
disjunctive kriging or the multivariate gaussian. Ed
Isaacs and Mohan Srivastava's book is th ebest
reference for the latter. Rivoirard's book for DK.

(2) simulation. There are lots of simulation methods
around, which allow you to 'put back the roughness'
and get an idea how bad the problem might be. GSLib is
pretty good on this.

Isobel
http://geoecosse.bizland.com/course_brochure.htm

If, as in mining, you wish to apply some sort





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[ai-geostats] Re: Kriging Small Blocks

2004-07-19 Thread Isobel Clark
Nicolau

I was talking about kriging before cutoff is applied.
If the cutoff is applied to the block estimates my
comments stand. If you aply the cutoff to your data
first and then krige, you get the opposite problem,
because you will over-estimate every value and
under-estimate the tonnage.

My point (1) is that, if you wish to avoid conditional
bias in your kriging, you could consider using a
non-linear kriging method such as those mentioned. I
have no experience with either, since I follow a
different route in the correction of conditional bias
in mineral resource estimation. 

Isobel
http://geoecosse.bizland.com/whatsnew.htm



--- [EMAIL PROTECTED] wrote:  Isobel,
 
 So for mining purposes can't we just krige before
 applying the cut-off
 criteria? I mean, for most mining applications one
 will prefer to have a
 more realistic geologic block model and will always
 have the chance to
 evaluate his/her panels under the appropriate
 cut-off criteria, but applying
 that criteria after estimating small blocks, right?
 
 Could you please explain your point in solution (1)
 below? Thanks for
 indicating the literature.
 
 Thanks
 
 Nicolau Barros
 Engineer
 Mine Planning and Production Control Department
 Mineração Rio do Norte S.A.
 [EMAIL PROTECTED]
 +55 (93) 549 8215
 
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 -Mensagem original-
 De: Isobel Clark [mailto:[EMAIL PROTECTED]
 Enviada em: segunda-feira, 19 de julho de 2004 05:23
 Para: [EMAIL PROTECTED]
 Cc: [EMAIL PROTECTED]
 Assunto: [ai-geostats] Re: Kriging Small Blocks
 
 Jul
 
 The warning about kriging small blocks is about
 small relative to the sampling density. For
 example,
 less than about one-third of the grid spacing.
 
 The warning is the same as the one about 'point'
 kriging (mapping) The map is too smooth - or, at
 least, a lot smoother than the real surface would
 be.
 High value areas will be under-estimated and low
 value
 areas will be over-estimated.
 
 If your objective in kriging is to obtain general
 maps
 of an area with an idea of where the highs and lows
 are, then ordinary kriging is sufficient. The over-
 and under- estimations cancel out on average.
 
 In mining applications, where block kriging
 originated, most applications require a 'cutoff',
 where values below a certain value are not included
 in
 the 'plan'. In this case, mapping or estimating
 small
 blocks will result in an over-estimation of
 'payable'
 ground and an under-estimation in average value.
 
 In pollution or environmental applications, the
 areas
 at risk will be under-estimated as will the true
 toxicity or risk factors.
 
 There are two major ways round this problem:
 
 (1) use a non-linear kriging approach such as
 disjunctive kriging or the multivariate gaussian. Ed
 Isaacs and Mohan Srivastava's book is th ebest
 reference for the latter. Rivoirard's book for DK.
 
 (2) simulation. There are lots of simulation methods
 around, which allow you to 'put back the roughness'
 and get an idea how bad the problem might be. GSLib
 is
 pretty good on this.
 
 Isobel
 http://geoecosse.bizland.com/course_brochure.htm
 
 If, as in mining, you wish to apply some sort
 
 




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[ai-geostats] Re: Kriging Small Blocks

2004-07-19 Thread Isobel Clark
Ed

I would differ from your explanation on one point. 

If you are merely declaring a mineral resource, i.e.
mineral in the ground, then the conditional bias may
not be relevant at the pre feasibility stage.

However, as soon as you introduce any economic or
technical parameters which entail selection, the
conditional bias makes its appearance. 

In every project I have worked on, from
pre-feasibility onwards, I have been asked for a
grade/tonnage calculation - no matter how hand-waving
it may be. The grade/tonnage curve will be affected by
the conditional bias. By how much has to be assessed
at the time. Most of Chapter 3 in Practical
Geostatistics 1979 is devoted to working out what the
(theoretical) global grade tonnage curve looks like
when you adjust for the variance reduction. Even this
will differ from the curve derived from the kriged
estimates, no matter what size the block. 

The problem is even greater for environmental
applications, especially toxic level risks. A 'global
view' - i.e. a map - will not identify the true peaks
because of the conditional bias. The fact that the
overall average is unbiassed is irrelevant when trying
to identify an area which is likely to be lethal. 

So, there is no contradiction. Conditional bias is
unimportant (or irrelevant) until you apply some
selection criterion. Yes, we agree. However, selection
criteria can be relevant at very early stages of a
project. It depends on your objective.

Isobel
http://uk.geocities.com/drisobelclark/practica.htm for
free downloads of Practical Geostatistics 1979

PS: sorry I mis-spelled your name, I know it drives me
nuts when people call me 'Clarke' ;-)





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[ai-geostats] spatial relationships

2004-09-01 Thread Isobel Clark
Mark

I could not agree more with Gregoire (with one
proviso, see below). 

Both geostatistics and any weighted average estimators
are based on the same assumptions -- that relationship
between values at two locations depends on the
distance between them and (possibly) their relative
orientation. If you cannot get a decent semi-variogram
after trying every type of graph [normal, robust,
relative] and every transformation and/or
interpretation of your data [logarithm, indicator,
rank transforms, Normal scores, mixed populations],
you do not have a distance-based relationship. This
conclusion also rules out: inverse distance weighting
of any kind; Delaunay triangles; Thiessen polygons and
so on.

My proviso: there are other forms of spatial
relationship than pure distance/direction types. The
simplest example of this is data with a trend, where
the value at a specified point will depend on its
absolute position. There may be an added component for
the 'residuals' which turns out to be
distance/direction based. There are also many examples
where, for example, flow characteristics, connectivity
and so on play a large part in the structure of your
variable. 

In short: no decent semi-variogram does NOT mean no
spatial relationship. It means no simple second-order
stationary geostatistical type spatial relationship. 

Isobel
http://geoecosse.bizland.com/whatsnew.htm





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[ai-geostats] spatial relationships

2004-09-02 Thread Isobel Clark
Dear oh Dear, I am failing to communicate (again).

As far as I know, I didn't say you could not use
geostatistics when a trend is present! I regularly use
Universal Kriging for data with a trend and kriging
with an external drift when the trend is governed by
an outside factor (see free tutorial at website).

The question originally posed what how does one decide
that geostatistics is not appriate. The answer
Gregoire and myself gave was when you cannot get a
semi-variogam graph after trying all possible
variations of transforms, interpretation and
de-trending. 

I recently worked with an orange grove in Florida
(bugs on oranges) which showed no decent
semi-variogram even though rough inverse distance maps
looked reasonable. It turned out they had two
different kinds of tree in the orchard. Separating the
'rootstocks' yielded a vastly improved semi-variogram
and decent geostatistical analysis.

My additional point was that failure to obtain a
semi-variogram model simply means that there is no
'distance related' structure. It does NOT mean there
is NO spatial structure. 

Isobel
http://geoecosse.bizland.com/softwares





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[ai-geostats] Re: Frightened of Spatial Autocorrelation

2004-09-02 Thread Isobel Clark
Kevin

Sounds like an ideal case for Geographically Weighted
Regression. 

You could use semi-variograms or spatial
auto-correlation to determine exactly how proximity
defines relationship. My only current beef with GWR is
the seemingly pre-defined distance weighting
functions. Not had much time to get into this yet, so
don't dump on me all you experts out there.

I would be interested in any published results on this
as one of my business partners is doing similar work
on bronze age denmark.

Isobel
http://uk.geocities.com/drisobelclark





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Re: [ai-geostats] A question on lag class and lag distance

2004-10-01 Thread Isobel Clark
xhy

your questions are long-standing and as yet unanswered
in general.

 1. How to select the lag class and lag distance in
 order to obtain a more reasonable experimental
 variogram? 
I always think of it as focussing a camera. Believe
there is a pattern in your data and our task is to
balance 'width of interval' versus 'number of pairs in
interval' to get the clearest picture.

One of the things I have found most useful with
irregularly spaced data is a 'nearest neighbour'
analysis. Take each sample and find the closest one to
it. Record the distance. Repeat for all samples. This
process takes twice as long as calculating the
semi-variogram but gives you an idea of the 'natural'
or model spacing between your samples. This can be
used to guide your choice of interval. 

Check out our free tutorial downloads at
http://geoecosse.bizland.com/softwares

 2. Is it reasonable to use an uneven set of lag
 (e.g. the lag increments are: 0-2.5m, 2.5-5.0m,
 5.0-12.0m, 12.0-19.5m, 19.5-27.0m, 27.0-30.0m,
 30.0-40m, 40-50m etc.) if a more stable variogram
 can be obtained?
I am not sure I have ever seen this done, but don't
see why not if you plot the point at the centre of
gravity of your interval (i.e. average distance of
pairs found).

Hope this helps
Isobel
http://geoecosse.bizland.com/books.htm





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[ai-geostats] Re: Sample data sets

2004-10-18 Thread Isobel Clark
Mark

We have about 13 data sets available on our free
download site, ranging from mining data to fisheries,
agriculture and environmental stuff. Number of data
ranges from 27 to 20,000.

Download from http://geoecosse.bizland.com/softwares
and find details and references for most of them at
http://geoecosse.bizland.com/bookbits/Chapter1_PG2000.pdf

Isobel





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[ai-geostats] Re: regularization

2004-10-26 Thread Isobel Clark
Samuel

Practical Geostatistics (1979) Chapter 3. Get it for
free at
http://uk.geocities.com/drisobelclark/practica.htm

Isobel
http://geoecosse.bizland.com/books.htm

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Re: [ai-geostats] problem of spatial continuity of groundwater head

2004-11-23 Thread Isobel Clark
Kai

I would suggest you take a look at:

Introduction to Geostatistics: Applications in
Hydrogeology (Stanford-Cambridge Program)  
P. K. Kitanidis 

which is a great base to work from.

Isobel
http:///geoecosse.bizland.com

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[ai-geostats] F and T-test for samples drawn from the same p

2004-12-04 Thread Isobel Clark
Don

Thank you for the extended clarification of F and t
hypothesis test. For those unfamiliar with the
concept, it is worth noting that the F test for
multiple means may be more familiar under the title
Analysis of variance.

My own brief answer was in the context of Colin's
question, where it was quite clear that he was talking
aboutthe simplest F variance-ratio and t comparison of
means test.

Isobel

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[ai-geostats] RE: F and T-test for samples drawn from the same p

2004-12-05 Thread Isobel Clark
Hence my recommendation to use cross cross validation
Isobel
http://geoecosse.bizland.com/books.htm



 --- Colin Daly [EMAIL PROTECTED] wrote: 
 
 
 Hi
 
 Sorry to repeat myself - but the samples are not
 independent.  Independance is a fundamental
 assumption of these types of tests - and you cannot
 interpret the tests if this assumption is violated. 
 In the situation where spatial correlation exists,
 the true standard error is nothing like as small as
 the (s/sqrt(n)) that Chaosheng discusses - because
 the sqrt(n) depends on independence.
 
 Again, as I said before, if the data has any type of
 trend in it, then it is completely meaningless to
 try and use these tests - and with no trend but some
 'ordinary' correlation, you must find a means of
 taking the data redundancy into account or risk get
 hopelessly pessimistic results (in the sense of
 rejecting the null hypothesis of equal means far too
 often)
 
 Consider a trivial example. A one dimensional random
 function which takes constant values over intervals
 of lenght one - so, it takes the value a_0 in the
 interval [0,1[  then the value a_1 in the interval
 [1,2[ and so on (let us suppose that each a_n term
 is drawn at random from a gaussian distribution with
 the same mean and variance for example).  Next
 suppose you are given samples on the interval [0,2].
 You spot that there seems to be a jump between [0,1[
 and [1,2[  - so you test for the difference in the
 means. If you apply an f test you will easily find
 that the mean differs (and more convincingly the
 more samples you have drawn!). However by
 construction of the random function,  the mean is
 not different.  We have been lulled into the false
 conclusion of differing means by assuming that all
 our data are independent.
 
 Regards
 
 Colin Daly
 
 
 -Original Message-
 From: Chaosheng Zhang
 [mailto:[EMAIL PROTECTED]
 Sent: Sun 12/5/2004 11:42 AM
 To:   [EMAIL PROTECTED]
 Cc:   Colin Badenhorst; Isobel Clark; Donald E. Myers
 Subject:  Re: [ai-geostats] F and T-test for samples
 drawn from the same p
 Dear all,
 
 
 
 I'm wondering if sample size (number of samples, n)
 is playing a role here.
 
 
 
 Since Colin is using Excel to analyse several
 thousand samples, I have checked the functions of
 t-tests in Excel. In the Data Analysis Tools help, a
 function is provided for t-Test: Two-Sample
 Assuming Unequal Variances analysis. This function
 is the same as those from many text books (There are
 other forms of the function). Unfortunately, I
 cannot find the function for assuming equal
 variances in Excel, but I assume they are similar,
 and should be the same as those from some text
 books.
 
 
 
 From the function, you can find that when the sample
 size is large you always get a large t value. When
 sample size is large enough, even slight differences
 between the mean values of two data sets (x bar and
 y bar) can be detected, and this will result in
 rejection of the null hypothesis. This is in fact
 quite reasonable. When the sample size is large, you
 are confident with the mean values (Central Limit
 Theorem), with a very small stand error
 (s/(sqrt(n)). Therefore, you are confident to detect
 the differences between the two data sets. Even
 though there is only a slight difference, you can
 still say, yes, they are significantly different.
 
 
 
 If you still remember some time ago, we had a
 discussion on large sample size problem for tests
 for normality. When the sample size is large enough,
 the result can always be expected (for real data
 sets), that is, rejection of the null hypothesis.
 
 
 
 Cheers,
 
 
 
 Chaosheng
 

--
 
 Dr. Chaosheng Zhang
 
 Lecturer in GIS
 
 Department of Geography
 
 National University of Ireland, Galway
 
 IRELAND
 
 Tel: +353-91-524411 x 2375
 
 Direct Tel: +353-91-49 2375
 
 Fax: +353-91-525700
 
 E-mail: [EMAIL PROTECTED]
 
 Web 1: www.nuigalway.ie/geography/zhang.html
 
 Web 2: www.nuigalway.ie/geography/gis/index.htm
 


 
 
 
 
 
 - Original Message -
 
 From: Isobel Clark [EMAIL PROTECTED]
 
 To: Donald E. Myers [EMAIL PROTECTED]
 
 Cc: Colin Badenhorst [EMAIL PROTECTED];
 [EMAIL PROTECTED]
 
 Sent: Saturday, December 04, 2004 11:49 AM
 
 Subject: [ai-geostats] F and T-test for samples
 drawn from the same p
 
 
 
 
 
  Don
 
 
 
  Thank you for the extended clarification of F and
 t
 
  hypothesis test. For those unfamiliar with the
 
  concept, it is worth noting that the F test for
 
  multiple means may be more familiar under the
 title
 
  Analysis of variance.
 
 
 
  My own brief answer was in the context of Colin's
 
  question, where it was quite clear that he was
 talking
 
  aboutthe simplest F variance-ratio and t
 comparison of
 
  means test.
 
 
 
  Isobel

Re: [ai-geostats] Re: F and T-test for samples drawn from the same p

2004-12-07 Thread Isobel Clark
Digby

I see where you are coming from on this, but in fact
the sill is composed of those pairs of samples which
are independent of one another - or, at least, have
reached some background correlation. This is why the
sill makes a better estimate of the variance than the
conventional statistical measures, since it is based
on independent sampling.

Isobel
http://geoecosse.bizland.com/whatsnew.htm


 --- Digby Millikan [EMAIL PROTECTED] wrote: 
 While your talking about sill's being the global
 variance which I read 
 everywhere,
 isn't the global variance actually slightly less
 than the sill, as the 
 values below the
 range of the variogram are not included? i.e. the
 sill would be the global 
 variance
 when you have pure nugget effect.
 
 
 
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[ai-geostats] Sill versus least-squares classical variance estimate

2004-12-07 Thread Isobel Clark
Meng-Ying

We are talking about estimating the variance of a set
of samples where spatial dependence exists. 

The classical statistical unbiassed estimator of the
population variance is s-squared which is the sum of
the squared deviations from the mean divided by the
relevant degrees of freedom. If the samples are not
inter-correlated, the relevant degrees of freedom are
(n-1). This gives the formula you find in any
introductory statistics book or course.

If samples are not independent of one another, the
degrees of freedom issue becomes a problem and the
classical estimator will be biassed (generally too
small on average). 

In theory, pairs of samples beyond the range of
influence on a semi-variogram graph are independent of
one another. In theory, the variance of the difference
betwen two values which are uncorrelated is twice the
variance of one sample around the population mean.
This is thought to be why Matheron defined the
semi-variogram (one-half the squared difference) so
that the final sill would be (theoretically) equal to
the population variance.

There are computer software packages which will draw a
line on your experimental semi-variogram at the height
equivalent to the classically calculated sample
variance. Some people try to force their
semi-variogram models to go through this line. This is
dumb as the experimental sill is a better estimate
because it does have the degrees of freedom it is
supposed to have.

I am not sure whether this is clear enough. If you
email me off the list, I can recommend publications
which might help you out.

Isobel
http://geoecosse.bizland.com/books.htm

 --- Meng-Ying  Li [EMAIL PROTECTED] wrote: 
 Hi Isobel,
 
 Could you explain why it would be a better estimate
 of the variance when
 independance is considered? I'd rather think that we
 consider the
 dependance when the overall variance are to be
 estimated-- if there
 actually is dependance between values.
 
 Or are you talking about modeling sill value by the
 stablizing tail on
 the experimental variogram, instead of modeling by
 the calculated overall
 variance?
 
 Or, are we talking about variance of different
 definitions? I'd be
 concerned if I missed some point of the original
 definition for variances,
 like, the variance should be defined with no
 dependance beween values or
 something like that. Frankly, I don't think I took
 the definition of
 variance too serious when I was learning stats.
 
 
 Meng-ying
 
  Digby
 
  I see where you are coming from on this, but in
 fact
  the sill is composed of those pairs of samples
 which
  are independent of one another - or, at least,
 have
  reached some background correlation. This is why
 the
  sill makes a better estimate of the variance than
 the
  conventional statistical measures, since it is
 based
  on independent sampling.
 
  Isobel
  

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[ai-geostats] variogram analysis

2004-12-08 Thread Isobel Clark
Rajive

I haven't read the other responses yet, so this may be
redundant.

Two possibilities:

(1) anisotropy: if this is shallow marine data there
should be a difference between longshore drift and
off-shore deepening of sea-bed. You have an
omni-directional semi-variogram. It is possible that
the sampling grid is irregular enough to be
highlighting directional differences??

(2) mega-ripples: I have seen similar behaviour in
off-shore marine diamonds which tend to hug the bottom
of trenches or ripples. Major ocean beds have
mega-ripples on the kilometre scale, which is what you
are seeing here.

More worrying, I would say, is the fact that your
graph is dropping with distance. This suggests that
you also have some underlying trend (non-stationarity)
which is causing closely spaced samples to be 'more
different' than those further apart. 

I notice you are using a log transform. What does your
probability plot look like? 

Isobel

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[ai-geostats] Re: Sill versus least-squares classical variance estimate

2004-12-08 Thread Isobel Clark
Meng-Ying

No, I do not think we are communicating.

The variance of data values is not affected by
correlation between the sample values.

The estimated variance for the population IS affected
by correlation between the sample values. Statistical
inference about the population is based on the
assumption that samples were taken randomly and
independently from that population. 

It is the process of estimation of unknown parameters
by classical statistical theory which requires these
assumptions.

Geostatistical inference does not require absence of
correlation, quite the contrary. The semi-variogram
graph is constructed on the assumption that there is a
correlation between samples and that this depends on
distance and direction between the pair of samples.

If we have a stationary situation, where the mean and
variance are constant over the study area, the
semi-variogram generally reaches a sill value. The
distance at which this happens is interpreted as that
distance beyond which the correlation is zero. Sample
pairs at this distance or greater can be used to
estimate the variance, since the statistical
assumptions are now satisifed.

Isobel
http://geoecosse.bizland.com/whatsnew.htm




 --- Meng-Ying  Li [EMAIL PROTECTED] wrote: 
 Hi Isobel,
 
 I understand all points you pointed out, but I'm not
 sure why the variance
 should be defined as data NOT SPATIALLY CORRELATED
 when they may or may
 not be correlated.
 
 Thanks for the clarification, though, I don't think
 I'd be able to
 clarify the things you clarifies. You're good.
 
 
 Meng-ying
 
 On Wed, 8 Dec 2004, Isobel Clark wrote:
 
  Meng-Ying
 
  I don't know how to say this any other way. At
  distances larger than the range of influence,
 samples
  are NOT SPATIALLY CORRELATED.
 
  The variance of the difference between two
  uncorrelated samples is twice the variance of one
  sample around the mean.
 
  The semi-variogram is one-half of the variance of
 the
  difference.
 
  Hence the sill is (theoretically) equal to the
  variance. The sill is based on all pairs of
 samples
  found at a distance greater thn the range of
  influence.
 
  The classical statistical estimator of the
 variance is
  only unbiassed if the correct degrees of freedom
 are
  used. If the samples are correlated, n-1 is NOT
 the
  correct degrees of freedom.
 
  All explained in immense detail in Practical
  Geostatistics 2000, Clark and Harper,
  http://geoecosse.hypermart.net
 
  Did I get it clear this time?
  Isobel
 
   --- Meng-Ying  Li [EMAIL PROTECTED] wrote:
   I understand why it is not appropriate to force
 the
   sill so it matches the
   sample variance. My question is, why estimate
 the
   overall variance by the
   sill value when data are actually correlated?
  
  
   Meng-ying
  
   On Tue, 7 Dec 2004, Isobel Clark wrote:
  
Meng-Ying
   
We are talking about estimating the variance
 of a
   set
of samples where spatial dependence exists.
   
The classical statistical unbiassed estimator
 of
   the
population variance is s-squared which is the
 sum
   of
the squared deviations from the mean divided
 by
   the
relevant degrees of freedom. If the samples
 are
   not
inter-correlated, the relevant degrees of
 freedom
   are
(n-1). This gives the formula you find in any
introductory statistics book or course.
   
If samples are not independent of one another,
 the
degrees of freedom issue becomes a problem and
 the
classical estimator will be biassed (generally
 too
small on average).
   
In theory, pairs of samples beyond the range
 of
influence on a semi-variogram graph are
   independent of
one another. In theory, the variance of the
   difference
betwen two values which are uncorrelated is
 twice
   the
variance of one sample around the population
 mean.
This is thought to be why Matheron defined the
semi-variogram (one-half the squared
 difference)
   so
that the final sill would be (theoretically)
 equal
   to
the population variance.
   
There are computer software packages which
 will
   draw a
line on your experimental semi-variogram at
 the
   height
equivalent to the classically calculated
 sample
variance. Some people try to force their
semi-variogram models to go through this line.
   This is
dumb as the experimental sill is a better
 estimate
because it does have the degrees of freedom it
 is
supposed to have.
   
I am not sure whether this is clear enough. If
 you
email me off the list, I can recommend
   publications
which might help you out.
   
Isobel
http://geoecosse.bizland.com/books.htm
   
 --- Meng-Ying  Li [EMAIL PROTECTED]
 wrote:
 Hi Isobel,

 Could you explain why it would be a better
   estimate
 of the variance when
 independance is considered? I'd rather think
   that we
 consider the
 dependance when the overall variance are to
 be
 estimated

[ai-geostats] descriptive statistics or inference?

2004-12-08 Thread Isobel Clark
 And just a personal opinion, I would like to think
 geostatistic
 theories apply to population of any size, as small
 as 27, or as large as
 1,000,000. If I'm making an example that
 geostatistics doesn't apply, then
 there's something to concern about in this approach.
Geostatistics applies to any size of sample set but
for the theory to work ou have to have a relatively
enormous population to draw rom.

Put in plain terms, the assumption is that the
withdrawal of the samples does not materially affect
the behaviour of the population.

If you have the whole population, you don't need to do
tests or estimates.

Isobel
http:geoecosse.bizland.com/books.htm

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[ai-geostats] within line variance

2004-12-09 Thread Isobel Clark
Meng-Ying  

Assuming that you generated your line with a Spherical
model, range 3, 27 samples making 9 ranges the
variance within that line will (theoretically) be
0.9191 of the semi-variogram sill.

Of course this theory depends on you have every
possible sample in that length, not just 27 of them.

Isobel
http://uk.geocities.com/drisobelclark/practica.htm

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