Re: [mitk-users] [Extern] - Inquire about MITK auto match

2024-05-07 Thread Dinkelacker, Stefan
Hi Jinhao, I assume you are using MITK v2023.12? Using Segment Anything has a few prerequisites and requires some installation to be done. Details can be found the in the user manual [1]. The GrowCut (variant of GraphCut) tool is still available. It is listed in the 3D tools tab, not in the

Re: [mitk-users] [Extern] - Measurements ineinander überführen

2024-01-30 Thread Dinkelacker, Stefan
Hi Patricia, yes, it is possible but a bit techy. There are two ways to do it and depending on your use case you may prefer one over the other. A) Convert right in the MITK Workbench and modify the path a little to show the area - Open the Properties plugin - Select the path in the Properties

Re: [mitk-users] [Extern] - Re: Build failed on Windows 10

2024-01-18 Thread Dinkelacker, Stefan
Sorry, messed up the bisecting, the last working version of CMake is v3.27.9. Von: Dinkelacker, Stefan Gesendet: Donnerstag, 18. Januar 2024 01:28 An: Ervin Tasnadi Cc: mitk-users@lists.sourceforge.net Betreff: Re: [mitk-users] [Extern] - Re: Build failed

Re: [mitk-users] [Extern] - Re: Build failed on Windows 10

2024-01-17 Thread Dinkelacker, Stefan
. Von: Ervin Tasnadi Gesendet: Mittwoch, 17. Januar 2024 23:01 An: Dinkelacker, Stefan Cc: mitk-users@lists.sourceforge.net; Raphael Erard Betreff: Re: AW: [mitk-users] [Extern] - Re: Build failed on Windows 10 Hi, Thanks, for investigating the issue. I suspect

Re: [mitk-users] [Extern] - Re: Build failed on Windows 10

2024-01-17 Thread Dinkelacker, Stefan
FYI, I created an ITK issue here: https://github.com/InsightSoftwareConsortium/ITK/issues/4407 Von: Dinkelacker, Stefan Gesendet: Mittwoch, 17. Januar 2024 12:26 An: Raphael Erard; Ervin Tasnadi; mitk-users@lists.sourceforge.net Betreff: Re: [mitk-users

Re: [mitk-users] [Extern] - Re: Build failed on Windows 10

2024-01-17 Thread Dinkelacker, Stefan
Hi all, sorry for the late reply, somehow the MITK Users mails weren't delivered to me this year as usual. I am having the same issue right now with a new build. The error originates in the ITK dependency of MatchPoint, which in turn is a dependency of MITK. The actual issue is not obvious,

Re: [mitk-users] [Extern] - Zoom/ Magnification

2023-12-18 Thread Dinkelacker, Stefan
as Bild in den Fokus rücken und die gesamte Ansicht füllen lassen. Mit freundlichen Grüßen, Stefan Von: Patricia Kornacker Gesendet: Mittwoch, 13. Dezember 2023 15:51 An: mitk-users@lists.sourceforge.net; Dinkelacker, Stefan Betreff: [Extern] - Zoom/ Magnific

Re: [mitk-users] [Extern] - How to quickly compile a custom MITK extension module?

2023-12-06 Thread Dinkelacker, Stefan
Hi, that's unusual. I may happen that the build sometimes still crawls through already built libraries but in that case it should just take milliseconds per library to check timestamps. A few ideas: - It seems like you still called make from superbuild level. After your superbuild was

Re: [mitk-users] [Extern] - Ask about the commercial use of Mitk

2023-11-22 Thread Dinkelacker, Stefan
Dear David, thanks for your inquiry. MITK is licensed under the BSD 3-Clause license and hence can be used as free open-source software even for commercial use as-is [1]. The German Cancer Research Center (DKFZ) does currently not offer any additional commercial licensing of MITK. We took

Re: [mitk-users] Issue introduced by commit a095aba80ec692f287d3c8f2a4ea3609d468c79d

2023-11-09 Thread Dinkelacker, Stefan
data node without falling back to a potentially existing base data property. Another solution would be to also listen to the Modified event of the base data or its property list or even directly of its name StringProperty. Best, Stefan Von: Dinkelacker, Stefan

Re: [mitk-users] Issue introduced by commit a095aba80ec692f287d3c8f2a4ea3609d468c79d

2023-11-09 Thread Dinkelacker, Stefan
Hi Trudbert, thank you for the report. We disabled new accounts on our Phabricator instance indeed due to excessive spam attacks. I'll create a task on your behalf. As we are currently in the crunch and testing phase for the upcoming release, we cannot promise to include a fix already, though.

Re: [mitk-users] [Extern] - Custom MITK data and renderer

2023-11-01 Thread Dinkelacker, Stefan
Hi Raphael, yes, this is a job for your mapper. For example, see mitkBoundingShapeVtkMapper3D.cpp (GenerateDataForRenderer()). Here, local coords are used and vtkTransforms are then used to apply the geometry. You can also work with global coords without transforms if that works better for

Re: [mitk-users] (no subject)

2023-06-22 Thread Dinkelacker, Stefan
Hi, did you build MITK before? I guess the easiest way then would be to set MITK_BUILD_CONFIGURATION to MITKModelFitRelease when configuring the MITK superbuild. Best, Stefan Von: priya dharshini Gesendet: Mittwoch, 21. Juni 2023 14:20 An:

Re: [mitk-users] how to add user defined vtk render pass

2023-03-30 Thread Dinkelacker, Stefan
? Von: Levi Max Gesendet: Donnerstag, 30. März 2023 08:18 An: Dinkelacker, Stefan Betreff: Re: [mitk-users] how to add user defined vtk render pass HI Din, thanks for your reply! i have reader the pipeline source and figure out the following

Re: [mitk-users] how to add user defined vtk render pass

2023-03-28 Thread Dinkelacker, Stefan
Hi, MITK uses VTK for rendering so one approach could be to facilitate VTK itself for custom render passes. I guess it makes also sense to have a look into mitk::VtkMapper::MitkRender() and mitk::VtkPropRenderer. Best, Stefan? Von: Levi Max Gesendet:

Re: [mitk-users] Modified view of polygons after reopened file

2023-03-08 Thread Dinkelacker, Stefan
Hi Patricia, I tried out a few things but I basically come to the same conclusion that planer figures like the polygon have some trouble to be drawn as expected on completely arbitrarily oriented slices and to jump back to their view plane when clicking on them in the Data Manager. I

Re: [mitk-users] Package cmdapps with make package on macOS

2023-03-08 Thread Dinkelacker, Stefan
Hi José! Do you use the mitkFunctionCreateCommandLineApp() CMake function to create your command-line apps? See the Modules/CoreCmdApps folder for examples. Command-line apps created with this approach should be automatically packaged like everything else but be aware that they come - just

Re: [mitk-users] Linking error on PythonService

2023-03-01 Thread Dinkelacker, Stefan
and master. Best, Stefan Von: Hirohisa Oda Gesendet: Mittwoch, 1. März 2023 02:38 An: Dinkelacker, Stefan Cc: mitk-users@lists.sourceforge.net Betreff: Re: AW: [mitk-users] Linking error on PythonService Dear Stefan I really appreciate your important reply

Re: [mitk-users] Linking error on PythonService

2023-02-22 Thread Dinkelacker, Stefan
Hi Hiro, I do not know the page you linked but it seems to be outdated and was updated the last time more than 7 years ago. A lot has changed since then, for example, we do not support the PluginGenerator anymore, the Python service is in an experimental state with big changes nearly done in

Re: [mitk-users] MITK Phenotyping; Discontiued Packages?

2023-02-13 Thread Dinkelacker, Stefan
. Februar 2023 09:50 An: Dinkelacker, Stefan; mitk-users@lists.sourceforge.net Betreff: AW: [mitk-users] MITK Phenotyping; Discontiued Packages? ​Dear Stefan, thank you for your answer. May I ask what you mean by "MITK Phenotyping configuration of MITK"? Is the built configuration indepe

Re: [mitk-users] MITK Phenotyping; Discontiued Packages?

2023-02-09 Thread Dinkelacker, Stefan
Dear K. Zhang, the official installers you found are indeed pretty much out of date nowadays. The developers of the Phenotyping feature left the department some time ago and as long as they do not take over for example by extracting and maintaining a dedicated MITK extension, we will

Re: [mitk-users] DataStorage clone

2022-11-29 Thread Dinkelacker, Stefan
Hi Zsombor, Amir or Stephen may add something about the mxn widget editor, which is specifically developed for such use cases. For now I can propose the classic solution to this kind of problem. Appearance of data in MITK is typically stored in the properties of a data node. You may be

Re: [mitk-users] unable to generate MitkPluginGenerator.exe

2022-11-25 Thread Dinkelacker, Stefan
?Hi Luison, we recently were informed that the PluginGenerator is still mentioned somewhere deep in our documentation but in general it was discontinued a long time ago in favor of the MITK-ProjectTemplate. We may reintroduce a completely rewritten plugin generator some day, but for now we

Re: [mitk-users] Custom colormaps and the Turbo colormap as standard?

2022-10-18 Thread Dinkelacker, Stefan
Hi Francois, thanks for the suggestion! While I cannot promising anything related to custom colormaps, as it would require major code changes, the Turbo color map will be available in the next snapshot installer followed by the official release installer at the end of this month. It is

Re: [mitk-users] (no subject)

2022-09-07 Thread Dinkelacker, Stefan
?Hi Paolo, welcome to MITK. :) In the past, we provided our installers in two different versions, with and without support for Nvidia AI-Assisted Annotations. However, Nvidia deprecated the toolkit and is heading towards MONAI Label. MONAI Label support is something that we are working on

Re: [mitk-users] Compile MITK ON UBUNTU18.04

2022-07-04 Thread Dinkelacker, Stefan
Hi, the file in question seems to be part of OpenIGTLink, an optional dependency of MITK mainly used in MITK's IGT modules. We have continuous and nightly build clients for our two first tier supported Ubuntu platforms with their default toolchains [1] [2]: Ubuntu 18.04 GNU 7.5 Ubuntu

Re: [mitk-users] Dicom-loading fails in tutorial project

2022-06-28 Thread Dinkelacker, Stefan
://www.dependencywalker.com/ Von: VR Bay Gesendet: Montag, 27. Juni 2022 16:17 An: Dinkelacker, Stefan Cc: mitk-users@lists.sourceforge.net Betreff: Re: [mitk-users] Dicom-loading fails in tutorial project Hi Stefan, I think we are getting closer but it still does

Re: [mitk-users] Dicom-loading fails in tutorial project

2022-06-26 Thread Dinkelacker, Stefan
Hi Peter, my first guess would be that your process of copying the DLLs next to the executable is the source of the issue. MitkDICOMImageIO is an auto-load module (using the CppMicroServices) and these auto-load modules are expected NOT to be next to the executable but instead in a subfolder

Re: [mitk-users] Last qt version

2022-06-07 Thread Dinkelacker, Stefan
Hi Emmanuel, MITK is not yet compatible with Qt 6 and we have to admit that we do not feel much pressure to prioritize migration at the moment taking into account how long it took Qt 5 to reach a mature state. In theory, with Qt 6.2 the base requirements are met now and at least in one of

Re: [mitk-users] MITK load multilabel segmentation programmatically

2022-05-27 Thread Dinkelacker, Stefan
Hi José, when you save a multilabel segmentation from MITK, make sure to select the MITK Multilabel Image writer. This is the default file writer when you right-click on a multilabel segmentation and chose Save as... The segmentation is then saved as a NRRD file with additional header data

[mitk-users] MITK v2022.04 released

2022-04-29 Thread Dinkelacker, Stefan
Dear MITK users and developers, we are happy to announce the official release of MITK v2022.04 today. Please visit the official MITK website [1] for details and downloads. Check out the changelog with summarized changes since the last release in our Phabricator wiki [2]. Best regards, The

Re: [mitk-users] Manual segmentation view crashing on M1 Macs [MITKv2018.04.2]

2022-03-30 Thread Dinkelacker, Stefan
Hi José, we do not yet use M1 macs, but we will keep an eye on that as soon as we use them. Best regards, Stefan Von: José Alonso Solís Lemus Gesendet: Donnerstag, 24. März 2022 18:48 An: mitk-users@lists.sourceforge.net Betreff: [mitk-users] Manual

Re: [mitk-users] How to use the “Basic Image Processing Plugin” in MITK

2022-03-11 Thread Dinkelacker, Stefan
Hi Jack, to use plugins like Basic Image Processing which are not part of the official MITK installers, you need to build MITK [1] to customize enabled plugins in the Workbench. Best, Stefan [1] https://docs.mitk.org/2021.10/BuildInstructionsPage.html?

Re: [mitk-users] ACVD in 2022 - with different repository

2022-02-03 Thread Dinkelacker, Stefan
to the stunning ACVD algorithm. Best, Stefan Von: Noll, Matthias Gesendet: Donnerstag, 3. Februar 2022 09:01 An: mitk-users@lists.sourceforge.net Cc: Dinkelacker, Stefan Betreff: ACVD in 2022 - with different repository Hi Stefan, quick question about ACVD. You

Re: [mitk-users] PluginGenerator and ProjectTemplate

2022-01-11 Thread Dinkelacker, Stefan
Thank you Matthias, I will fix it and add you as co-author to the commit. Best, Stefan Von: Noll, Matthias Gesendet: Montag, 10. Januar 2022 15:56 An: Dinkelacker, Stefan; Nil Goyette Cc: mitk-users@lists.sourceforge.net Betreff: RE: [mitk-users

Re: [mitk-users] Registration

2021-12-17 Thread Dinkelacker, Stefan
Another great and easy way to simplify your meshes with stunningly low distance errors is to use the Remeshing plugin of MITK v2018.04.2 (not any later version). It's based on ACVD. Starting from MITK v2021.02 we unfortunately had to switch to a much more basic remeshing algorithm. Best,

Re: [mitk-users] Error rendering more than two volumes in MITK

2021-10-29 Thread Dinkelacker, Stefan
An: Dinkelacker, Stefan Betreff: RE: Error rendering more than two volumes in MITK Hi, Thanks for your response and for your advices I tried using the 2D interpolation, because the intention was to perform marks in just one slide, but at the moment of the render they didn't show at all. Also the error

Re: [mitk-users] Error rendering more than two volumes in MITK

2021-10-28 Thread Dinkelacker, Stefan
?Hi, thanks for the video. I am trying to reproduce your crash both in v2021.02 and the latest snapshot installer with a similar workflow but I wasn't able to so far. Does the crash happen all the time for you? Side note: Since you are already aware of the interpolation feature, I would

Re: [mitk-users] Compilation problem

2021-10-10 Thread Dinkelacker, Stefan
Hi Andrea, double click on the line in the error window indicating that the CMake tool returned 1 to jump to the true error message in the output window, e. g., the CMake output. If I had to guess I would assume it is your build path is probably too long for ITK. Best, Stefan

Re: [mitk-users] how to tanslate the plugin

2021-09-03 Thread Dinkelacker, Stefan
Hi, since you mentioned "ExtApp" I assume you are using a very old version of MITK probably even still using Qt 4, and I'm afraid we cannot really support such old versions but in general I guess that you should look towards Qt's translation concept around tr() [1]. We didn't and still don't

Re: [mitk-users] qglx_findConfig: Failed to finding matching FBConfig

2021-06-16 Thread Dinkelacker, Stefan
Hi, it seems like OpenGL/GLX cannot get initialized. These bugs are in most cases related to graphics driver issues. Please make sure to (re-)install a recent graphics driver. In rare cases the hardware might be too old but it's not very likely as we only require OpenGL 3.2 (2009) I think.

Re: [mitk-users] Can't connect to mitk.org

2021-05-25 Thread Dinkelacker, Stefan
?Update: The original URL should work again. Best, Stefan Von: Dinkelacker, Stefan Gesendet: Dienstag, 25. Mai 2021 10:31 An: 826799683 Cc: mitk-users@lists.sourceforge.net Betreff: Re: [mitk-users] Can't connect to mitk.org ?You missed the www part

Re: [mitk-users] Can't connect to mitk.org

2021-05-25 Thread Dinkelacker, Stefan
?You missed the www part. :) Von: 826799683 <826799...@qq.com> Gesendet: Dienstag, 25. Mai 2021 07:50 An: Dinkelacker, Stefan Cc: amelv...@umich.edu; mitk-users@lists.sourceforge.net Betreff: Re: [mitk-users] Can't connect to mitk.org I changed the URL to

Re: [mitk-users] Can't connect to mitk.org

2021-05-24 Thread Dinkelacker, Stefan
Von: Dinkelacker, Stefan Gesendet: Dienstag, 25. Mai 2021 06:42 An: amelv...@umich.edu; mitk-users@lists.sourceforge.net Betreff: Re: [mitk-users] Can't connect to mitk.org Hi again, while it works with a browser, I have the same problem when running CMake. I will investigate

Re: [mitk-users] Can't connect to mitk.org

2021-05-24 Thread Dinkelacker, Stefan
Hi, do you still have any issues with mitk.org? At least it wasn't down for planned maintenance. I can reach/access everything now. Best, Stefan Von: amelv...@umich.edu Gesendet: Freitag, 21. Mai 2021 15:43 An: mitk-users@lists.sourceforge.net Betreff:

Re: [mitk-users] PluginGenerator and ProjectTemplate

2021-05-11 Thread Dinkelacker, Stefan
project A, Update project A, (Yada yada is up-to-date) * n". And it should be done in a few seconds. Best, Stefan ________ Von: Nil Goyette Gesendet: Dienstag, 11. Mai 2021 17:45 An: Dinkelacker, Stefan Cc: mitk-users@lists.sourceforge.net Betreff: Re: [mitk-users

Re: [mitk-users] Where to find the specific plugins on MITK workbench

2021-04-29 Thread Dinkelacker, Stefan
Hi Yuhan, welcome to MITK! The Model Fit plugins are not part of the official MITK Workbench installers. There's a Windows installer from 2018, linked here [1], though. Using the latest version of Model Fit would require to build MITK from the source code. Best, Stefan [1]

Re: [mitk-users] PluginGenerator and ProjectTemplate

2021-04-25 Thread Dinkelacker, Stefan
e and writing new CMake files is a hurdle for you. That's a perfect reason to use the extension mechanism instead. Fingers crossed Stefan Von: Nil Goyette Gesendet: Mittwoch, 21. April 2021 21:09 An: Dinkelacker, Stefan Cc: mitk-users@lists.sourcef

Re: [mitk-users] PluginGenerator and ProjectTemplate

2021-04-20 Thread Dinkelacker, Stefan
Hi, yes I can confirm. If your build seems to start from scratch again, there's probably a difference to the prior build configuration in one of the core dependencies. Best, Stefan Von: Nil Goyette Gesendet: Montag, 19. April 2021 20:18 An: Dinkelacker, Stefan

Re: [mitk-users] High resolution / 4K displays and application scaling

2021-04-14 Thread Dinkelacker, Stefan
Hi Daniel, I would have hinted you at the Qt application flags but you are already familiar with them obviously. :-) Maybe someone else have an idea. I believe that the click-offset is something that I saw in a Phabricator task but it must be very long ago. Regarding the VTK base class changes

Re: [mitk-users] PluginGenerator and ProjectTemplate

2021-04-09 Thread Dinkelacker, Stefan
Best, Stefan [1] https://github.com/MITK/MITK-ProjectTemplate/blob/master/CMakeExternals/Customization/ITK.cmake [2] https://github.com/MITK/MITK-ProjectTemplate/tree/master/Modules Von: Nil Goyette Gesendet: Freitag, 9. April 2021 04:19 An: Dinkelacker, S

Re: [mitk-users] About PointSet delete point and cannot Rendering immediately

2021-04-08 Thread Dinkelacker, Stefan
Hi, did you try to manually call Modified() on the PointSet already after deletion but before the render window update? It is just a guess but I could imagine that the PointSet mapper just didn't recognize that there's an update to regenerate the rendering data. Best, Stefan

Re: [mitk-users] PluginGenerator and ProjectTemplate

2021-04-07 Thread Dinkelacker, Stefan
at the moment. I also did not use Qt 5.15 yet, only 5.12. Best, Stefan Von: Nil Goyette Gesendet: Dienstag, 6. April 2021 17:21 An: Dinkelacker, Stefan Cc: mitk-users@lists.sourceforge.net Betreff: Re: [mitk-users] PluginGenerator and ProjectTemplate Hi Stefan, My

Re: [mitk-users] PluginGenerator and ProjectTemplate

2021-04-05 Thread Dinkelacker, Stefan
Hi Nil, you do *not* need to use the ProjectTemplate but it is at least the strongly recommended way for new MITK developers to go the framework route with MITK. You can still continue using MITK as plain CMake-based toolkit/library. As written in T27701, we just want to get rid of the

Re: [mitk-users] ITK failed 'lrintf'

2021-03-25 Thread Dinkelacker, Stefan
Hi Nil, thanks for reporting. https://phabricator.mitk.org/T28413 Best, Stefan Von: Nil Goyette Gesendet: Freitag, 26. März 2021 02:33 An: mitk-users@lists.sourceforge.net Betreff: [mitk-users] ITK failed 'lrintf' Hi all, I've been trying, without

Re: [mitk-users] Manual 3d surface

2021-03-09 Thread Dinkelacker, Stefan
?Hi, it's already available in the UI of the Workbench. In the Data Manager context menu of a segmentation node, click on "Create (smoothed) polygon model". These actions use the ShowSegmentationAs(Smoothed)Surface classes of the Segmentation module. Best, Stefan

[mitk-users] MITK v2021.02 released

2021-02-15 Thread Dinkelacker, Stefan
?Dear MITK users and developers, we are happy to announce the official release of MITK v2021.02 today. Please visit the official MITK website [1] for details and downloads. We also plan a series of blog posts spread over the following weeks, covering topics like our new development workflow

Re: [mitk-users] Compiling MITK in Windows 10

2021-01-31 Thread Dinkelacker, Stefan
Hi Enric, we recommend to base new developments on the master branch resp. one of the snapshots/... tags. Note that we also aim to release v2021.01 next week. That said, if you still want to base your developments on v2018.04.2, please use the releases/2018-04 branch (only available from

Re: [mitk-users] How to add additional dependency libraries to my own plugin?

2021-01-07 Thread Dinkelacker, Stefan
?Hi, look into the CMakeExternals folder of the MITK-ProjectTemplate for an example with comments. Look at MITK's own CMakeExternals folder for more examples. Don't forget to add a file to CMake/PackageDepends as well. Best, Stefan Von: storm

Re: [mitk-users] macOS support

2020-12-05 Thread Dinkelacker, Stefan
Hi Nil, this is an interesting question indeed. macOS (Mojave and Catalina) is tier 2 instead of tier 1 as we are not actively using it internally on a daily basis except that it is part of our CI clients (Mojave). Our current policy is to always support the latest two versions of macOS but

Re: [mitk-users] [MITKv2018.04.2] MitkWorkspace ability to edit segmentations

2020-12-04 Thread Dinkelacker, Stefan
segmentation to refine the segmentation. You can see it in action here: https://www.youtube.com/watch?v=T0Pjki4vXx0=2m? Best, Stefan Von: José Alonso Solís Lemus Gesendet: Freitag, 4. Dezember 2020 13:25 An: Dinkelacker, Stefan Cc: mitk-users

Re: [mitk-users] [MITKv2018.04.2] MitkWorkspace ability to edit segmentations

2020-12-03 Thread Dinkelacker, Stefan
PS: Here's a video of this process: https://youtu.be/Q4NJbpcEeqU? Von: Dinkelacker, Stefan Gesendet: Donnerstag, 3. Dezember 2020 21:44 An: José Alonso Solís Lemus; mitk-users@lists.sourceforge.net Betreff: Re: [mitk-users] [MITKv2018.04.2] MitkWorkspace ability

Re: [mitk-users] [MITKv2018.04.2] MitkWorkspace ability to edit segmentations

2020-12-03 Thread Dinkelacker, Stefan
Hi, to continue 3D interpolations between sessions, (1) Save the project as .mitk file instead of ony the segmentation node, and... (2) ... make sure to check "Show Position Nodes" below the interpolation buttons BEFORE. (3) Only then the Position nodes (only input for 3d interpolation)

Re: [mitk-users] segmentation of mitral valve from sparse rotational MRI images

2020-12-01 Thread Dinkelacker, Stefan
. Von: Dinkelacker, Stefan Gesendet: Dienstag, 1. Dezember 2020 12:54 An: lorenzo bennati; mitk-users@lists.sourceforge.net Betreff: Re: [mitk-users] segmentation of mitral valve from sparse rotational MRI images Hi, it is totally possible to load let's say 18 dynamic (time-resolved) 2d

Re: [mitk-users] segmentation of mitral valve from sparse rotational MRI images

2020-12-01 Thread Dinkelacker, Stefan
Hi, it is totally possible to load let's say 18 dynamic (time-resolved) 2d images into MITK. As long as the images still contain their position and orientation meta data they will be positioned accordingly in space and time by MITK. You can then segment each image with the Segmentation or

Re: [mitk-users] Do I need to manually free a mitk::DataNode's BaseData before using mitk::DataStorage::Remove()?

2020-11-17 Thread Dinkelacker, Stefan
Hi, yes. Best, Stefan Von: Alex Melville Gesendet: Dienstag, 17. November 2020 20:33 An: mitk-users@lists.sourceforge.net Betreff: [mitk-users] Do I need to manually free a mitk::DataNode's BaseData before using mitk::DataStorage::Remove()? Hello,

Re: [mitk-users] [MITK v2018.04.2] Coupled crosshair rotation resets before expected

2020-11-02 Thread Dinkelacker, Stefan
Hi, from what I see a reinit is called as soon as MVClipper is added to the scene. I do not know how this is done in your code but I recommend to look around the code location where MVClipper is added to check if you do an explicit reinit. For example, in vanilla MITK, when I open a surface,

Re: [mitk-users] troubles with 3D interpolation

2020-11-02 Thread Dinkelacker, Stefan
Hi, I recorded a short demo video of the feature and how it is supposed to look like: https://youtu.be/ILrE6BgZpiM Please note that I use the 3d interpolation feature of the Segmentation view. The 3D interpolation feature of the Multilabel Segmentation view is only a stub and was removed from

Re: [mitk-users] Include measurement toolbox plugin

2020-10-29 Thread Dinkelacker, Stefan
Hi, plugins are enabled or disabled at the MITK-build level, not the superbuild level*. So, after you finished your superbuild, in CMake, set the binary directory to the MITK-build subdirectory while leaving the source directory as-is. Then you can configure MITK itself, for example switch on

Re: [mitk-users] Possible Undefined behavior in mitkPlanarEllipse, return by value function's return value stored in reference

2020-10-20 Thread Dinkelacker, Stefan
?Thanks for the report. I also guess this is a typo. But I am curious if this really caused any trouble for you or if it was a finding during code reading? Best, Stefan Von: amelv...@umich.edu Gesendet: Montag, 19. Oktober 2020 18:04 An:

Re: [mitk-users] How to generate a full screen frameless blueberry application?

2020-10-20 Thread Dinkelacker, Stefan
?Hi, did you already tried QWindow::FullScreen? https://doc.qt.io/qt-5/qwindow.html#Visibility-enum Best, Stefan Von: p...@zjut.edu.cn Gesendet: Dienstag, 20. Oktober 2020 04:12 An: mitk-users@lists.sourceforge.net Betreff: [mitk-users] How to generate a

Re: [mitk-users] lung segmentation using Nvidia segmentation on MITK

2020-10-13 Thread Dinkelacker, Stefan
Hi Parisa, the MITK workbench is only a client. You need to set up a server and enter its URI in the preferences as stated in the error message. To set up your own server, see https://docs.nvidia.com/clara/tlt-mi/clara-train-sdk-v3.0/nvmidl/installation.html?. Best, Stefan

Re: [mitk-users] NVIDIA Clara Annotation

2020-10-12 Thread Dinkelacker, Stefan
Hi Parisa, I just checked the installers and I can see all the tools. Can you please describe in detail what you mean by "I don't have NVIDIA segmentation"? What OS do you use? Do you see the other NVIDIA segmentation tools on the 2D tools? Do you see all the tools but they do not seem to

Re: [mitk-users] Qt's license in MITK Workbench

2020-10-08 Thread Dinkelacker, Stefan
Hi, for this reason MITK only uses and *dynamically* links the LGPL part of Qt. The key is the dynamic linkage as the LGPL differentiates between static and dynamic linkage in contrast to GPL*. This way MITK is not "infected" with the LGPL license. As we bundle the Qt libraries in our

Re: [mitk-users] Moving BlueBerry Framework from MITK towards CTK making it independant of the massive MITK setup

2020-10-05 Thread Dinkelacker, Stefan
I'm afraid this page of the documentation is outdated and does not match the current directory structure anymore. Thanks for the hint. I already created a task to get this fixed: https://phabricator.mitk.org/T27818 Best, Stefan Von: Ramazan Ergüder Bekrek

Re: [mitk-users] Is there any template project that have the foundation to build a modular application with Qt?

2020-09-11 Thread Dinkelacker, Stefan
11, 2020 10:47 AM To: Dinkelacker, Stefan ; mitk-users@lists.sourceforge.net Subject: Re: AW: AW: [mitk-users] Is there any template project that have the foundation to build a modular application with Qt? Can you or someone other in your contacts with whom I can connect who can provide more

Re: [mitk-users] Is there any template project that have the foundation to build a modular application with Qt?

2020-09-11 Thread Dinkelacker, Stefan
is not a complete implementation of OSGi and there may be things missing you are used to rely on. Best, Stefan From: Ramazan Ergüder Bekrek [mailto:e.bek...@yandex.com] Sent: Thursday, September 10, 2020 1:44 PM To: Dinkelacker, Stefan ; mitk-users@lists.sourceforge.net Subject: Re: AW: AW: [mitk

Re: [mitk-users] Is there any template project that have the foundation to build a modular application with Qt?

2020-09-10 Thread Dinkelacker, Stefan
the whole superbuild with something custom. Best, Stefan Von: Ramazan Ergüder Bekrek Gesendet: Donnerstag, 10. September 2020 02:03 An: Dinkelacker, Stefan; mitk-users@lists.sourceforge.net Betreff: Re: AW: [mitk-users] Is there any template project that

Re: [mitk-users] Is there any template project that have the foundation to build a modular application with Qt?

2020-09-08 Thread Dinkelacker, Stefan
Hi, there are several ways of using MITK. On the most basic level, you have to decide if you want to MITK as a toolkit or as framework. Toolkit means that you use MITK just like any other bunch of libraries and depend on MITK libraries/modules in your CMake-based project with

Re: [mitk-users] Event to handle Data Manager node renames

2020-09-01 Thread Dinkelacker, Stefan
​Hi Alex, I do not know your context, e.g. if you want to modify MITK code like the Data Manager plugin, do not want to touch MITK code, or want to write your own application from scratch based on or not based on BlueBerry. But in general, you are on the right track with ITK events. You want

Re: [mitk-users] Support Qt MetaObject in MITK project

2020-08-08 Thread Dinkelacker, Stefan
it to the LTS version. Best, Qing Dr. Qing PAN Associate Professor College of Information Engineering Zhejiang University of Technology 288 Liuhe Road, 310023 Hangzhou China Phone: +86-85290595 Email: p...@zjut.edu.cn From: Dinkelacker, Stefan Sent: Friday, August 7, 2020 4:37 PM To: p...@zjut.edu.cn

Re: [mitk-users] Support Qt MetaObject in MITK project

2020-08-07 Thread Dinkelacker, Stefan
Hi, 1) Add your header file to MOC_H_FILES in files.cmake (double-check, case-sensitivity, path, everything correct?) 2) Derive from a QWidget or a subclass of it 3) Make sure that the Qt base class that you derive from is the FIRST base class you write in your declaration like

Re: [mitk-users] Smart pointers and DataStrorage ownership question

2020-07-28 Thread Dinkelacker, Stefan
Hi Alex, most MITK derive from "ITK", so I suggest to make familiar with itk::LightObject/Object and itk::SmartPointer in the ITK documentation, which will basically answer all your questions. :-) It works because the reference counter of the "reference counting smart pointer" is not part of

Re: [mitk-users] Segmentation not working in latest nightly windows build of MITK-DIFFUSION

2020-07-27 Thread Dinkelacker, Stefan
Hi, this issue is addressed in https://phabricator.mitk.org/T27602?. Best regards, Stefan Von: Neher, Peter Gesendet: Montag, 27. Juli 2020 15:59 An: Amit Choudhari; mitk-users@lists.sourceforge.net Betreff: Re: [mitk-users] Segmentation not working in

Re: [mitk-users] Inheriting from Qmitk Widgets / widget promotion

2020-06-29 Thread Dinkelacker, Stefan
Hi, just use the regular "Promoted Widgets" feature of Qt creator. The creator will not show you the actual Qmitk Widget, but the substitute you specified (probably just QWidget). When you check "global include" you just have to make sure that the compiler can resolve the include path like

Re: [mitk-users] build mitk2018 failed

2020-06-08 Thread Dinkelacker, Stefan
Hi, I recommend to clone the releases/2018-04 branch from https://phabricator.mitk.org/source/mitk.git This branch is based on the last release but has some fixes for updated tools and Qt versions. In general I recommend to to use the latest minor releases of Qt, in your case 5.12.8 instead

Re: [mitk-users] OpenGL Error & Crash on using Remote Desktop Connection on windows 10

2020-06-08 Thread Dinkelacker, Stefan
Hi, thanks for the report. The error message about the profiles originate from the WebEngine part of Qt and you can safely ignore it. Windows Desktop Remote does not really work with OpenGL > v.1.1. There's a kind-of-workaround as far as I know: Start the workbench locally and leave it

Re: [mitk-users] Batch exporting annotation data

2020-05-04 Thread Dinkelacker, Stefan
[Re-sending to mitk-users list, sorry] Hello Huanxiang, I guess you are using the binary segmentation plugin and create separate annotation images for all your annotations? If you cannot use the multilabel segmentation plugin, which creates all annotations and layers in a single image (and

Re: [mitk-users] Filters, Segmentation, and surface rendering

2020-04-16 Thread Dinkelacker, Stefan
> But can one give a fast answer if ITK has filters? I think VTK has no filters > to my knowledge. https://itk.org/Doxygen413/html/group__ImageFilters.html > Is there some place in the code where segmentation is governed central? > Short question: I conclude that there are different

Re: [mitk-users] Filters, Segmentation, and surface rendering

2020-04-15 Thread Dinkelacker, Stefan
Hi Markus, I'm not sure if you would like to get answers from an end-user perspective or developer perspective? - A broad question that cannot be answered in short but MITK is in general based on ITK and VTK so you can use everything that ITK is offering pretty much without reinventing the

Re: [mitk-users] Plans for migrating 2D image mappers to vtkImage(Re)SliceMapper

2020-04-15 Thread Dinkelacker, Stefan
Hi, thanks for the hints, we didn't look into these VTK classes yet, but we are very curious about speeding up and improving 2d image rendering. :) The 2d image mapper is a "hot" topic anyways for years (see https://phabricator.mitk.org/T24071 for example). It also has fundamenal flaws

Re: [mitk-users] No LocalStorage for PlaneGeometryDataVtkMapper3D

2020-04-15 Thread Dinkelacker, Stefan
Hi, should be fine. When it was implemented there was only a single 3d window and so I guess it never appeared to be a problem to not have a local storage there. :-) Do you contribute? Best, Stefan Von: Federico Milano Gesendet: Mittwoch, 15. April 2020

Re: [mitk-users] creating a new module

2020-03-27 Thread Dinkelacker, Stefan
Hi, MITK is based on CMake, so all project related changes need to be done in the CMake script. After that you can re-generate the Visual Studio solution to include your changes. Start by looking into [1]. After you understood the Example module you can start your own module by copying it or

Re: [mitk-users] Errors while building the MITK superbuild on macOS

2020-03-10 Thread Dinkelacker, Stefan
​Hi, "omp" stands for OpenMP, so I guess you build OpenMP-enabled code without providing and setting OpenMP the correct way. Only MITK-Diffusion requires OpenMP so if you're building plain MITK, I guess you have a corrupted installation of OpenMP on your macOS that was picked up as optional

Re: [mitk-users] .stl visualization in 2d render window

2020-03-09 Thread Dinkelacker, Stefan
Hi, MITK/VTK surfaces are just surface meshes without any filling. If you want your closed surface mesh to act as an image mask for example, you can use the “Segmentation Utilities View > Surface To Image”, select your reference image and your surface mesh and click on “Convert”. This will

Re: [mitk-users] mitk_create_plugin and C++ Microservices

2020-03-09 Thread Dinkelacker, Stefan
Hi Alex, I think you mixed up two different things here. While MITK plugins do come with CppMicroServices support, it has nothing to do with the plugin registration. MITK is using the CTK plugin framework for this [1]. BTW you can always look into the MITK/CMake directory to find the code

Re: [mitk-users] Registration Plugin

2020-02-19 Thread Dinkelacker, Stefan
Hello, you find the suite of seven registration plugins in the registration toolbar at the top of the MITK Workbench. If you can't see the icons, click on the text "Registration" or the arrow right next to it in the toolbar. You can find them also in the "Window -> Show View" menu, their

Re: [mitk-users] How can I leave this thread?!

2020-02-05 Thread Dinkelacker, Stefan
To unsubscribe the mitk-users mailinglist, visit https://sourceforge.net/projects/mitk/lists/mitk-users/unsubscribe.<https://sourceforge.net/projects/mitk/lists/mitk-users/unsubscribe> Von: Alice Self Gesendet: Dienstag, 4. Februar 2020 11:01 An: Dinke

Re: [mitk-users] lib file of module not built

2020-02-04 Thread Dinkelacker, Stefan
Hi, PACKAGE_DEPENDS is only for external projects, not for modues. Use DEPENDS for modules. You can and should also combine your two PACKAGE_DEPENDS lines in the example below. PRIVATE is the default, so if you want to propagate dependencies you need to make them PUBLIC. See the

Re: [mitk-users] CMaker Error: Target "***" links to target "Eigen3::Eigen" but the target was not found.

2020-02-03 Thread Dinkelacker, Stefan
/T27038 I’m sure Peter will work on this during this week. From: Haiyong Wu [mailto:enjoy3d...@gmail.com] Sent: Monday, February 3, 2020 2:16 PM To: Dinkelacker, Stefan ; mitk-users@lists.sourceforge.net Subject: Re: [mitk-users] CMaker Error: Target "***" links to target &quo

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