nobis distance of each group?
I will use the Mahalanobis distance for the minimum spanning tree and
dendogram to compare the minimum spanning tree and dendogram of the
original sample size?
Thank you very much.
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Hello! I would like to ask for help as I use the book of Dryden and Mardia,
"Statistical Shape Analysis with Application in R"? I cannot find where in
the book (or maybe I just overlooked), how did he plot the mean shapes in
Figure 8.4. Thank you very much.
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appreciated. Thank you very much.
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t
I note that we recently have achieved 1000 subscribers to morphmet!
Caveat 1: Over the years, some have removed themselves from the list or
asked me to remove them. So, there have actually been more than 1000 people
subscribing, but we have never had 1000 subscribers on the list at the same
ct with support to try to see what is going on. For now, I have
no idea if your individual posts to the list (including this one -
fourth attempt) will appear.
In the meantime, please be patient.
-the moderator
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and dissertations
based on this method once we knew how bad it was. His biorxiv upload and
his announcement of it on morphmet were not a surprise to us. There were
emails exchanged about the need to warn users. At the time, Fred told me
that he needed to go ahead with the biorxiv upload as it was
scussion quite different
from mine. This fragment, particularly its style of simulating and
reporting, may have served later as the basis of the second of the two
papers as I referred to it both in my Monday morphmet posting and in my
biorxiv preprint. (I say "may have" because I have
rxiv.org/content/10.1101/627448v1
For those of you who were at the March meeting, this is the argument
(complete with formulas) defending my stern condemnation there. I won't try
to summarize it in this morphmet note -- if you're interested, just read
the abstract on page 1 of the link.
3 144.0817472.9395
88.3825 141.0176474.3985
90.9274 140.2106477.6371
85.2512 140.7932478.2403
I would apreciate if somebody could help me.
Please don't hesitate to ask me for more details.
King regards
Azadeh
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/link-springer-com.proxy.lib.fsu.edu/journal/13752
-ds [the MORPHMET moderator]
On Tuesday, April 30, 2019 at 11:01:15 AM UTC-4, MORPHMET wrote:
>
> [Posted on behalf of Dr. Bookstein]
>
> Dear MorphMetters,
>
> I'm happy to announce that my paper "Reflections on a Biometric
e
arithmetic of today's burgeoning image-based data resources and the
rhetoric of biological explanations of organismal form both over evolution
and over development.
As always I welcome all comments on these ideas, enthusiastic or otherwise.
Fred Bookstein
r findings for which the Rohlf
Medal was awarded.
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1313,0
664,0 1335,0
797,0 1429,0
559,0 1477,0
679,0 1503,0
391,0 1217,0
485,0 1093,0
533,0 914,0
880,0 809,0
849,0 715,0
707,0 802,0
496,0 632,0
IMAGE=3572.jpg
ID=0
The option "tps" was chosen. Wha
-00014 FINLAND
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N-00014 FINLAND
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Hello!
Has anyone ever used 3D data to make a video showing the shape changes in
human skull evolution? For example warping from a chimpanzee to modern
human? I think it would be great to have a movie like this to use when
teaching human evolution.
Thanks!
Abby
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the flowers, based
> on the abiotic factors of the places the plants live in.
>
> I'll be so thankful for any guide that you can provide me.
>
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Fred Bookstein
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a, Y., & Klingenberg, C. P. (2011). Beyond bilateral symmetry:
geometric morphometric methods for any type of symmetry. *BMC evolutionary
biology*, *11*(1), 280.
Best wishes!
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/10.1101/310789
Best wishes,
Yoland Savriama
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6712; doi: https://doi.org/10.1101/306712
Best wishes,
Yoland Savriama
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Faculty of Natural Sciences and Mathematics
Koroška cesta 160, 2000 Maribor, Slovenija
T: +386 41 808 366
E: tina.klenov...@um.si<mailto:ime.prii...@um.si>,
www.fnm.um.si<http://www.fnm.uni-mb.si>
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You r
species.
In which user friendly program (like MorphoJ ☺) can I analyse outline data and
visualize variability?
Thank you again,
Tina
From: Joanna Lenarczyk [mailto:j.kowal...@botany.pl]
Sent: Thursday, March 15, 2018 10:21 AM
To: Tina Klenovšek
Subject: Re: [MORPHMET] digitizing very variable leaves
: Wednesday, March 14, 2018 3:59 AM
To: Tina Klenovšek
Subject: Re: [MORPHMET] digitizing very variable leaves
An assumption of the usual GMM methods is that shape variation is "small". I
think these leaves exceed this quite a bit! Another problem is landmarks. How
to match leaves with a
:10.1038/s41467-017-02788-3
Best wishes,
Yoland Savriama
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150x, would work for you.
Best of luck!
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rter gene, FgANS in
symmetry of flowers.
Best wishes!
Yoland Savriama
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ature. 2010 Mar
25;464(7288):583-6.
8. Interested candidates should check our group webpage:
http://www.biocenter.helsinki.fi/salazar/index.html
The center of Excellence webpage:
http://www.biocenter.helsinki.fi/bi/evodevo/ECDev.html
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closing discussion emphasizes the
desirability of superseding PCA by algorithms aimed at anthropological
understanding rather than classification or ordination.
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.au> wrote:
> Dear Morphmet Community,
>
> I kindly ask your help in completing a short survey on trends in digital
> morphology data generation and use as part of a perspectives piece on the
> “Ethics of data sharing in the age of digital imaging”, which I will
> present a
.
If I missed literature on that topic I would be grateful for any hint to
further reading.
Thanks in advance for your thoughts,
Alex
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You
w.italian-journal-of-mammalogy.it/public/journals/3/issue_241_complete_100.pdf
ESTIMATE YOUR GLOBAL FOOTPRINT:
http://www.footprintnetwork.org/en/index.php/GFN/page/calculators/
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hanks!
gabe wrobel
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mental models at the time.
>
> Can anyone help?
>
> Cheers
> Bill
> --
> Bill Sellers, Tel: 01612751719, Mobile: 07857655786,
> http://www.animalsimulation.org
> University of Manchester, D1239 Michael Smith Building, Manchester, M13
> 9PT.
>
> --
> MORPHMET may be ac
ta 160, 2000 Maribor, Slovenija
T: (00 386) 041 808 366
E: tina.klenov...@um.si<mailto:tina.klenov...@um.si>,
www.fnm.um.si<http://www.fnm.uni-mb.si/>
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Dear all,
I am advertising a 2-year post-doctorial fellowship focused on artefact
morphometrics (lithics). Those interested, please have a look here
http://www.au.dk/om/stillinger/videnskabelige-stillinger/stillinger/Vacancy/show/852090/5285/;
feel free to share.
Yours,
Felix
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I would like to freshen up the online resource links on the
www.morphometrics.org page. If you have any relevant active links, please
post them so I can add them to the website (if I can remember how).
Thanks, the MORPHMET Management
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s my error massege:
'435.0' is not a valid floating point value Bad decimal character in
coordinates?.'
I get the same error for tps files with and without removed control lines.
I hope someone has an idea why this Problem shows up and can help me.
Thanks
Jan
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regard to race, sex, color,
national origin, religion, sexual orientation, gender identity, age,
veteran status, political affiliation, genetics, or disability. The
successful applicant must furnish proof of identity and employment
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ither learn from it or send me your objections. Yours from Vienna
with best wishes, Fred Bookstein
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er too Darwin':
Project therio.it <http://therio.it> : https://dibt.unimol.it/therio/
Assistan Editor Italian Journal of Zoology
http://www.tandfonline.com/toc/tizo20/current#.Uuv5YfjANf9
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If a response is impo
erio/
Assistan Editor Italian Journal of Zoology
http://www.tandfonline.com/toc/tizo20/current#.Uuv5YfjANf9
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You received this message
Sitting in the Atlanta airport on my way back from the third Rohlf Medal
award ceremony, and I just approved the 750th subscriber to the list.
Congratulations to HS in Alaska who wins a free subscription to MORPHMET.
:)
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me a result, with plot-able CV scores for the fossil taxa, but I want
to be certain the method is valid.
In addition, assuming that what I have done with the CVA is correct;
how would I best go about testing the likelihood of group membership
for these fossil taxa?
Cheers all,
Blake Dicks
odations if you plan to attend.
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The deadline approaches: July 15, 2015! Time to get your applications in.
On Monday, March 9, 2015 at 8:24:10 AM UTC-4, MORPHMET wrote:
>
> *2015 CALL FOR NOMINATIONS*
>
> *The Rohlf Medal*
>
> The Rohlf Medal was established in 2006 by the family and friends of F.
> James R
Evolutionsbiologie
mit Phyletischem Museum
Friedrich-Schiller-Universität Jena
Germany
This message was sent through https://webmail.uni-jena.de
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To unsubscribe
CS) is the square root of the sum of
squared distances between landmarks and their centroid. But I found
also in papers that Centroid Size=1. I did not understand, if someone
can help me please? Thanks
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o
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Marko Djurakic,
Teaching assistant,
Faculty of Sciences
Department of Biology and Ecology
University of Novi Sad
Trg Dositeja Obradovića 2
21 000 Novi Sad
Serbia
PhD student at Faculty of Biology,
University of Belgrade
Studentski trg 16
11000 Belgrade
Serbia
e-mail: marko.djura...@dbe.uns.ac.rs
A friendly reminder to start getting your nominations packages together.
On Monday, March 9, 2015 at 1:24:10 PM UTC+1, MORPHMET wrote:
>
> *2015 CALL FOR NOMINATIONS*
>
> *The Rohlf Medal*
>
> The Rohlf Medal was established in 2006 by the family and friends of F.
> James R
coordinates
differ from the imported one, except for the first specimen.*
*
*
May I know why does this happen? Will this affect subsequent analyses?
Your kind reply is highly appreciated!
Best regards,
Patrick
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, and Self-Similarity" is the first item
that comes up on offer.
The title is what it is because there is an immediate application to
integration studies in GMM whereby the Procrustes model must be replaced by
something different as the null model for such studies.
With best wishes, Fred
uni-goettingen.de/en/44993.html
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or he will
deliver a lecture that is appropriate for a broad audience, ranging from
the exact sciences to the humanities, concerning the morphometric
methodology, software, or findings for which the Rohlf Medal was awarded
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...@dbe.uns.ac.rs
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would like to append these data, based on the 4
landmarks they have in common.
Could someone give me leads on the best software for doing this kind of
manipulation?
Thank you-
-Bryan
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I have just sent out the final re-re-...invitations to addresses on the old
MORPHMET mailing list. When these expire, they addresses will be deleted,
and anyone wanting to join will have to do so using the standard procedure.
At this writing, we have 640 subscribers, which is pretty impressive
names of at least two referees should be sent as a single PDF document
to Dr Kornelius Kupczik (kupczik (AT) eva (DOT) mpg (DOT) de). For further
information
about the Max Planck Weizmann Center see http://www.eva.mpg.de/mpwc.
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Bourgeois
--
PhD Student
Université de Perpignan Via Domitia, ED 544, UR MEDI-TERRA
Centre Européen de Recherche Préhistorique de Tautavel, UMR CNRS 7194
--
EPCC - CERPT
Avenue Léon-Jean Grégory
66720
Tautavel
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MORPH
Yesterday, the website and MORPHMET went down. The reason was that I asked
to cancel account with the original (more expensive) service provider. When
they did this, it wiped out something called the Zone File. I spent a
significant part of today getting that restored. I think it works, now
Delight has been achieved!
I am delighted to report that membership in the new MORPHMET has surpassed
the 600 subscriber mark - 603 as of this writing. Also,
www.morphometrics.org has rec'd nearly 400 unique (by IP) visits from
computers in 45 countries (see embedded map on the website)
Satisfaction obtained -> currently at exactly 500 subscribers.
Now, anticipating delight...600
The Management
On Saturday, August 16, 2014 10:34:42 AM UTC-4, MORPHMET wrote:
>
> Hi, Folks. This is just an update on the ongoing migration to the new
> system.
>
> First, I
Please be aware that you DO NOT have to have a gmail account to subscribe
to the list. That is only necessary if you want to use the web interface.
You can request to join the list from any email address (as far as I know)
by sending a message to:
morphmet+subscr...@morphometrics.org
The
rface, you must be logged in via a Google account. If
you do not have one (and are subscribed), you may post to the list by
sending an email to morphmet@morphometrics.org or replying (to the list) to
postings appearing in your email account. Users are initially set up to
receive real-time ema
I am pleased to announce that the new MORPHMET is open for business. Usage
notes follow.
1) Anyone can view the list's content, but only subscribers can post.
2) moderation - Initial posts from all users will be moderated. When your
first post is approved, moderation will be turned off
e new www.morphometrics.org web page.
4) create new morphmet mailing list - morphmet@morphometrics.org
5) play with new list to identify any problems
6) port the current morphmet subscription list (1100+) At that time, you
will receive an email message inviting you to accept your subscription
to the new list.
I
I have been making progress preparing the migration to the new system,
but not quite there, yet. I hope to have this done by or over the weekend.
I am writing this to let you know that when MORPHMET does come back up,
you will receive an invitation to join the new list (actually just the
old
It is my intention to take morphmet down shortly (today?). I believe I
have cleared all pending postings and subscription requests.
If all goes well, it should be down for a few hours or a couple of days.
Most likely the latter to give me a chance to test the new system.
If all goes well
Original Message
Subject:Re: Slicer question
Date: Mon, 28 Jul 2014 21:16:07 -0400
From:
To: morphmet@morphometrics.org
Hi Donna,
We use it daily, what would you like to know?
*From:* morphmet_modera...@morphometrics.org
<mailto:morphmet_mod
Original Message
Subject: Re: Fwd: Re: Image rotation data loss
Date: Sun, 29 Jun 2014 04:43:20 -0400
From: Dennis E. Slice
To: morphmet@morphometrics.org
Also, your message suggests all images were in the same orientation. If
some were reflected and others not, I don&#
Original Message
Subject: Re: Image rotation data loss
Date: Sun, 29 Jun 2014 03:38:32 -0400
From: Dennis E. Slice
To: morphmet@morphometrics.org
First guess would be your landmarks are out of order on one or more
specimens. You can check this by creating a set of links in
Original Message
Subject: Re: Comparing svd() and prcomp() output from R
Date: Fri, 6 Jun 2014 16:26:20 -0400
From: Dennis E. Slice
To: morphmet@morphometrics.org
I take it you are comparing svd(x) and prcomp(x) where x is your data
matrix? prcomp() subtracts the mean. -ds
Sorry for jumping the queue, but...
Over time, we have had a number of problems with message distribution on
MORPHMET. The fundamental issue is that when multiple messages are
distributed the host sometimes shuts down the list thinking it is spam.
We believe the problem ultimately arises from
Dear morphmetters,
A few of you may remember that way back in December 2009 I began
to write a book, "Numbers and Reasons," based on my teaching notes since
1986 across all of statistics (not just morphometrics). Things have a
way of taking more time than you expect, and it wasn't until
Original Message
Subject: Re: cervical vertebrae morphometrics
Date: Fri, 27 Sep 2013 03:55:22 -0400
From: Dennis E. Slice
To: morphmet@morphometrics.org
This would be a good start:
Anat Rec B New Anat. 2006 Sep;289(5):184-94.
Functional morphology of the first cervical
Dear Morphmeters, I may sent out some duplicate messages from the past
few days - some seemed familiar, though not in my personal archive. If
so, I apologize. -the morphmet mod (dslice)
Original Message
Subject:RE: bilat.symmetry output in geomorph
Date: Sun, 14 Jul 2013 18:30:13 -0400
From: Adams, Dean [EEOBS]
To: morphmet@morphometrics.org
CC: Dean Adams (dcad...@iastate.edu)
Milos,
At present, bilat.symmetry() does not return
Original Message
Subject:bilat.symmetry output in geomorph
Date: Sat, 13 Jul 2013 08:29:45 -0400
From: Milos Blagojevic
To: morphmet@morphometrics.org
Hi to all morphometricians,
I was wondering how to use bilat.symmetry function from geomorph package
Original Message
Subject: New paper on morphological modularity
Date: Wed, 17 Jul 2013 05:12:49 -0400
From: Carmelo Fruciano
To: morphmet@morphometrics.org
Dear list members,
I would like to inform you about our new paper on variation in
morphological modularity.
Fruciano
Original Message
Subject:Re: MorphoJ Text File Formatting
Date: Fri, 12 Jul 2013 12:26:48 -0400
From: marwa ben nasr
To: morphmet@morphometrics.org
Hi,
I am a PhD student, I am new to geometric morphometrics.
I have samples of fish which were collected
Original Message
Subject:Morphological integration on developmental series
Date: Fri, 12 Jul 2013 16:48:42 -0400
From:
To: morphmet@morphometrics.org
Hi,
Can anyone suggest a tool to do MI analysis on an ontological series?
Specifically I am looking to
Original Message
Subject: RE: tps format problem reading in R
Date: Wed, 3 Jul 2013 11:32:55 -0400
From: Adams, Dean [EEOBS]
To: morphmet@morphometrics.org
Hi John,
There were two issues here, and both of which have easy fixes. First,
there is only 1 specimen in your tps
Thought I would post an update.
On one system running Apple OS X 10.8.4, I uninstalled Apple Java 1.6(1)
and installed Oracle Java 1.7(2).
Morpheus runs just fine in this environment, and there is no need to run
the mac_os_x_prepare script.
jEdit(3) is still partially broken, but looking in
Original Message
Subject: Re: Morpheus Java Error
Date: Fri, 28 Jun 2013 12:14:20 -0400
From: Dennis E. Slice
To: morphmet@morphometrics.org
Thanks, we are trying to set up a database of tested systems. I will
post a report on OS/Java version observations shortly. -ds
On 6
Original Message
Subject: Morpheus: java versions
Date: Fri, 28 Jun 2013 12:32:48 -0400
From: Dennis E. Slice
To: morphmet@morphometrics.org
Some background and current status of Morpheus et al., Java Edition.
The software was developed and tested on Mac OS X with the
Original Message
Subject: Re: Morpheus Java Error
Date: Fri, 28 Jun 2013 12:13:21 -0400
From: Dennis E. Slice
To: morphmet@morphometrics.org
Hmm, this doesn't make sense:
a) You can access java from the command line.
b) Morpheus runs when double clicked (works with
[Added to the Announcements page at www.morphometrics.org -the morphmet
moderator (dslice)]
Remembrances of Robert Sokal
Save the date: Sunday November 18, 2-4 P.M., Wang Center Chapel at Stony
Brook University
Robert Sokal passed away last April and his funeral and memorial service
were
-0400
From: Antigoni Kaliontzopoulou
To: morphmet@morphometrics.org
Hi Dennis,
could you please post the following message to the list?
I hope everything is well with you, have a great summer!
All the best,
Antigoni
Dear colleagues,
a call for applications for the w/orkshop on //*Multiva
Original Message
Subject:RE: CV shape variation
Date: Mon, 4 Jun 2012 15:05:53 -0400
From: F. James Rohlf
Reply-To: ro...@life.bio.sunysb.edu
Organization: Stony Brook University
To: morphmet@morphometrics.org
I am not sure of the question being
Original Message
Subject:RE: comparison of two different structures
Date: Mon, 4 Jun 2012 14:59:23 -0400
From: F. James Rohlf
Reply-To: ro...@life.bio.sunysb.edu
Organization: Stony Brook University
To: morphmet@morphometrics.org
If what you mean by
Original Message
Subject: RE: multi-class ANOVA analogue for geometric morphometrics
Date: Mon, 4 Jun 2012 14:59:23 -0400
From: F. James Rohlf
Reply-To: ro...@life.bio.sunysb.edu
Organization: Stony Brook University
To: morphmet@morphometrics.org
Once you have projected your
Original Message
Subject: Geometric Morphometrics courses
Date: Fri, 25 May 2012 05:06:01 -0400
From: Soledad Esteban
To: morphmet@morphometrics.org
Dear colleagues:
This e-mail is to inform you of some courses on Geometric Morphometrics,
which may would be of your
Original Message
Subject:tpsUtil update
Date: Wed, 23 May 2012 21:46:50 -0400
From: F. James Rohlf
Reply-To: ro...@life.bio.sunysb.edu
Organization: Stony Brook University
To: morphmet@morphometrics.org
I have just uploaded version 1.49 to the Stony
Original Message
Subject: PhD in morphological evolution
Date: Wed, 23 May 2012 05:35:58 -0400
From: coue...@mnhn.fr
To: morphmet@morphometrics.org
Hello,
You'll find below a PhD subject proposed to the Ecole Pratique des
Hautes Etudes (France)
The subject (and ONE appl
Original Message
Subject:Re: Generate Outlines
Date: Tue, 22 May 2012 07:48:59 -0400
From: Tim Astrop
To: morphmet@morphometrics.org
Hi Damián,
I'd like to help you with this problem. What analysis were you thinking
of using to evaluate your outline
Original Message
Subject:Generate Outlines
Date: Mon, 21 May 2012 21:14:58 -0400
From: damian cardenas loboguerrero
To:
Hello everyone
I´m doing my bachelor degree thesis in Geometric Morphometrics applied
to paleobotanical analysis. I have to evaluate pol
Original Message
Subject:An FTP replacement for 3D and much more ...
Date: Mon, 21 May 2012 13:38:02 -0400
From: Scott Anderson
To:
Hello,
I was suggested to write (and was introduced) to the Morph Group by a
contact at Skidmore and then Harvard, to get he
Original Message
Subject:Re: correcting for body size
Date: Sun, 20 May 2012 09:46:09 -0400
From: GREGORY CAMPBELL
Reply-To: GREGORY CAMPBELL
To: morphmet@morphometrics.org
Dear Saad: It's perfectly possible for a fitted line to account for a
l
Original Message
Subject:Re: EVAN Toolbox lighting problem
Date: Thu, 17 May 2012 06:58:11 -0400
From: Helgi Pétur Gunnarsson
To: morphmet@morphometrics.org
Hello Stephanie,
The lighting sometimes can get messed up if you do a GPA on the surface
(pass it
Original Message
Subject:EVAN Toolbox lighting problem
Date: Wed, 16 May 2012 16:21:40 -0400
From: Stephanie Kozakowski
To: morphmet@morphometrics.org
Hi all,
I am using the EVAN Toolbox v.1.52 and am having trouble getting the
light to shine on the
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