Re: [Skim-app-users] Micro-zoom ?

2024-03-19 Thread Thomas Schneider via Skim-app-users
Christiaan: Thanks for all your efforts on this great program. > "Zoom to fit" isnot a setting, it is an action. > I think you are confused with "Automatically Resize",which is a > setting that can also be set as a default. Ok I sort of understand. But it doesn't answer my question of how to

Re: [Skim-app-users] Micro-zoom ?

2024-03-04 Thread Thomas Schneider via Skim-app-users
do this a number of times and never got a solution. Maybe it could be done automatically with a script? Tom Thomas D. Schneider, Ph.D. Senior Investigator National Institutes of Health National Cancer Institute Center for Cancer Research RNA Biology Laboratory Biological Information The

[Skim-app-users] copy/paste note

2023-09-23 Thread Thomas Schneider via Skim-app-users
pdftotext I get the URL from the note. So it's in the PDF but not recognized by the macOS. Tom Thomas D. Schneider, Ph.D. Senior Investigator National Institutes of Health National Cancer Institute Center for Cancer Research RNA Biology Laboratory Biological Information Theory Group

Re: [Skim-app-users] Skim 1.6.20

2023-08-23 Thread Schneider, Thomas (NIH/NCI) [E] via Skim-app-users
= "10670016", pmcid = "PMC1692708", note = "\url {https://doi.org/10.1098/rstb.1999.0535};, comment = "2015/02/10 08:35:40 from Schuster2011, Keller2005 cited this: '... it is clear that the prime intellectual task of the future lies in constructing an appropriate theore

Re: [Skim-app-users] Search display suggestion

2023-03-27 Thread Schneider, Thomas (NIH/NCI) [E] via Skim-app-users
Christiaan: > No, that is not possible.That is what the search pdf feature does. > Finding all matches is a potentially slow, and therefore > asynchronous, process. So this cannot work together with quick > single match. (And searching just a page is not possible). I'm quite puzzled. Why is it

Re: [Skim-app-users] Search display suggestion

2023-03-27 Thread Schneider, Thomas (NIH/NCI) [E] via Skim-app-users
Christiaan: > It is the default. For that feature. In the other featur, it is > impossible, as it would interfere.For insurance, arrows generally > have a function in many contexts. I'm viewing without Option-Command-F. I prefer to use the Command-F (the search bar appears at the top) because

Re: [Skim-app-users] Search display suggestion

2023-03-26 Thread Schneider, Thomas (NIH/NCI) [E] via Skim-app-users
about making the multiple hits and moving by arrows the default? Tom Thomas D. Schneider, Ph.D. Senior Investigator National Institutes of Health National Cancer Institute Center for Cancer Research RNA Biology Laboratory Biological Information Theory Group Frederick, Maryland 21702-

Re: [Skim-app-users] Search display suggestion

2023-03-25 Thread Schneider, Thomas (NIH/NCI) [E] via Skim-app-users
number of hits and which hit one is looking at. This could help people using Skim. Tom Thomas D. Schneider, Ph.D. Senior Investigator National Institutes of Health National Cancer Institute Center for Cancer Research RNA Biology Laboratory Biological Information Theory Group Fre

Re: [Skim-app-users] Search display suggestion

2023-03-25 Thread Schneider, Thomas (NIH/NCI) [E] via Skim-app-users
Christiaan: > To some extent, you can get this with the Search PDF feature. I only know about command-F that provides a search feature. It does not mark all hits. Is there another search feature? If so, where do I find it? Tom ___ Skim-app-users

[Skim-app-users] Search display suggestion

2023-03-25 Thread Thomas Schneider via Skim-app-users
be great if the highlighting (and maybe the strip) were in Skim! Thanks for all your great work. Tom Thomas D. Schneider, Ph.D. Senior Investigator National Institutes of Health National Cancer Institute Center for Cancer Research RNA Biology Laboratory Biological Information

Re: [Skim-app-users] Problem using SKIM on two computers

2023-01-15 Thread Schneider, Thomas (NIH/NCI) [E] via Skim-app-users
command line script for it: https://alum.mit.edu/www/toms/ftp/skimembed The key line is: /Applications/Skim.app/Contents/SharedSupport/skimpdf embed "$1" where "$1" should be replaced by the file name. Tom Thomas D. Schneider, Ph.D. Senior Investigator National Institute

Re: [Skim-app-users] skim failing to display figures

2022-10-18 Thread Schneider, Thomas (NIH/NCI) [E] via Skim-app-users
Christiaan: > This can only be a limitation of Apple’s PDFKit, which we use to > display the PDF. You should see the same problem in Preview. You are right! I suppose I'll have to write to Science to report the issue. Or maybe Apple? Tom Thomas D. Schneider, Ph.D. Senior Invest

[Skim-app-users] skim failing to display figures

2022-10-18 Thread Thomas Schneider via Skim-app-users
cience and this did not correct the problem. So something is strange about these figures from 10 years ago. Why won't Skim show them? Since this is copyright, if you don't have access I could send you the PDF privately if you want. Thanks for all your efforts on the fabulous Skim!!! Tom Thomas D. Schnei

Re: [Skim-app-users] Skim popup problem

2022-10-01 Thread Schneider, Thomas (NIH/NCI) [E] via Skim-app-users
Christiaan > I actually have no idea. But it has almost certainly got something > to do with how the system treats the trash. Yes, I agree. > I am actually suprised > you are able to do what you can top, as for me that does not work. > Most file operations (like cp) just fail with “operation

[Skim-app-users] Skim popup problem

2022-09-30 Thread Thomas Schneider via Skim-app-users
c *" and this does not prevent the popup. This does not happen if I work in /tmp or another directory, only in ~/.Trash Does anyone have a clue what's going on? Tom Thomas D. Schneider, Ph.D. Senior Investigator National Institutes of Health National Cancer Institute Center for Cancer

Re: [Skim-app-users] zoom to fit

2022-09-06 Thread Schneider, Thomas (NIH/NCI) [E] via Skim-app-users
> That does not have any immediate effects. That only saves the > settings for newly opened PDFs in the future. So you probably saved > that with a tiny zoom factor. You can choose that with a larger zoom > factor, or with Automatically Resize checked. Or you can set the > default settings in the

Re: [Skim-app-users] zoom to fit

2022-09-05 Thread Schneider, Thomas (NIH/NCI) [E] via Skim-app-users
Christiaan: > There is currently a system bug that has the automatic zoom level a > bit off (basically it does not take the titlebar into account). That > will is fixed for the next release. But that should not disallow > page navigation. Ok. > > > This is called Automatically Resize, in the

Re: [Skim-app-users] [EXTERNAL] Re: zoom to fit

2022-08-30 Thread Schneider, Thomas (NIH/NCI) [E] via Skim-app-users
Christiaan: > This is called Automatically Resize, in the PDF menu (or the toolbar > if you have the button). It is also is indicated whether it is on or > off. I have that on. One PDF opened properly and is zoomed properly (so I can scroll to switch pages) - but I had set that up previously.

[Skim-app-users] zoom to fit

2022-08-29 Thread Thomas Schneider via Skim-app-users
open to zoom to max in this fixed space. Please help. I need exact instructions on how to do this. Thanks much! Tom Thomas D. Schneider, Ph.D. Senior Investigator National Institutes of Health National Cancer Institute Center for Cancer Research RNA Biology Laboratory Biological

[Skim-app-users] Bad PDF, possible font problem

2022-04-15 Thread Thomas Schneider via Skim-app-users
. Schneider, Ph.D. Senior Investigator National Institutes of Health National Cancer Institute Center for Cancer Research RNA Biology Laboratory Biological Information Theory Group Frederick, Maryland 21702-1201 schne...@mail.nih.gov https://alum.mit.edu/www/toms

Re: [Skim-app-users] Extracting and deleting pages

2022-03-21 Thread Schneider, Thomas (NIH/NCI) [E] via Skim-app-users
FirstPage=m -dLastPage=n > -sOutputFile=output.pdf input.pdf > > where m and n are positive integers (page numbers), i.e. the above command > only prints out pages starting from page number m through n of input.pdf into > output.pdf. Tom Thomas D. Schneider, Ph.D. Senior Inves

Re: [Skim-app-users] [EXTERNAL] Re: Skim fit

2021-12-31 Thread Schneider, Thomas (NIH/NCI) [E] via Skim-app-users
Christiaan: > > (Also "Automatically Resize" is difficult to work with - one has to > > click on it and then THE WINDOW GOES AWAY SO I DO NOT KNOW IT WAS SET! > > I have to click on PDF again to see whether I did set it or not. > > Please do not make it go away when it is being set. > I don't

[Skim-app-users] Skim fit

2021-12-25 Thread Thomas Schneider via Skim-app-users
SET! I have to click on PDF again to see whether I did set it or not. Please do not make it go away when it is being set. Help!! Thanks for a GREAT program, Tom Thomas D. Schneider, Ph.D. Senior Investigator National Institutes of Health National Cancer Institute Center for Cancer Re

Re: [Skim-app-users] go to right desktop on reopening

2021-12-18 Thread Schneider, Thomas (NIH/NCI) [E] via Skim-app-users
g Sur 11.6. Tom Thomas D. Schneider, Ph.D. Senior Investigator National Institutes of Health National Cancer Institute Center for Cancer Research RNA Biology Laboratory Biological Information Theory Group Frederick, Maryland 21702-1201 schne...@mail.nih.gov https://alum.

Re: [Skim-app-users] [EXTERNAL] Skim 1.6.7

2021-12-17 Thread Schneider, Thomas (NIH/NCI) [E] via Skim-app-users
Christiaan: > Release notes for Skim version 1.6.7 > Bugs Fixed > * Fix initial fit to PDF. YAY!! THANK YOU!!! WORKS LIKE A CHARM! Tom Thomas D. Schneider, Ph.D. Senior Investigator National Institutes of Health National Cancer Institute Center for Cancer Resea

Re: [Skim-app-users] Puzzling Skim settings

2021-11-20 Thread Schneider, Thomas (NIH/NCI) [E] via Skim-app-users
Christiaan: > This is unfortunately a bug that slipped into the last release. The > "Fit" option should essentially do what you want, which is the same > as choosing Window > "Fit to PDF" right after opening the document. > Note that this still works. But apparently with the latest changes > the

Re: [Skim-app-users] Puzzling Skim settings

2021-11-20 Thread Thomas Schneider via Skim-app-users
'? Tom Thomas D. Schneider, Ph.D. Senior Investigator National Institutes of Health National Cancer Institute Center for Cancer Research RNA Biology Laboratory Biological Information Theory Group Frederick, Maryland 21702-1201 schne...@mail.nih.gov https://alum.mit.edu/www/toms

[Skim-app-users] Puzzling Skim settings

2021-11-20 Thread Thomas Schneider via Skim-app-users
doesn't have any obvious help. I think it would help to make all preferences in one place and make this method (tight display, zoom to fit) easy to set up. Thanks, Tom Thomas D. Schneider, Ph.D. Senior Investigator National Institutes of Health National Cancer Institute Center

Re: [Skim-app-users] Comments database for research

2021-10-22 Thread Schneider, Thomas (NIH/NCI) [E] via Skim-app-users
.. these scripts can get quite sophisticated but start out simple. Tom Thomas D. Schneider, Ph.D. Senior Investigator National Institutes of Health National Cancer Institute Center for Cancer Research RNA Biology Laboratory Biological Information Theory Group Frederick, Maryland

Re: [Skim-app-users] Feature suggestion: popup viewer activated only when a modifier key is pressed

2021-05-15 Thread Schneider, Thomas (NIH/NCI) [E] via Skim-app-users
your efforts to make Skim such a great tool. Your work is superb. Tom Thomas D. Schneider, Ph.D. Senior Investigator National Institutes of Health National Cancer Institute Center for Cancer Research RNA Biology Laboratory Biological Information Theory Group Frederick, Maryland

Re: [Skim-app-users] Feature suggestion: popup viewer activated only when a modifier key is pressed

2021-05-14 Thread Schneider, Thomas (NIH/NCI) [E] via Skim-app-users
Christiaan: > That is annoying, but there is nothing we can do about tgat, as the > system fails to give us any notification it is supposed to give us. I see. So it IS a bug but a timing one? Sometimes I act so fast that the OS cannot report to Skim quickly enough to turn it off? (I have

Re: [Skim-app-users] Feature suggestion: popup viewer activated only when a modifier key is pressed

2021-05-13 Thread Schneider, Thomas (NIH/NCI) [E] via Skim-app-users
Christiaan: > You can just move the mouse away. In general, but sometimes a reference popup holds on even to the next page! I kind of have to 'shake' it off! Tom ___ Skim-app-users mailing list Skim-app-users@lists.sourceforge.net

Re: [Skim-app-users] Feature suggestion: popup viewer activated only when a modifier key is pressed

2021-05-13 Thread Schneider, Thomas (NIH/NCI) [E] via Skim-app-users
ially when I go to a new page. They should be less persistent. Tom Thomas D. Schneider, Ph.D. Senior Investigator National Institutes of Health National Cancer Institute Center for Cancer Research RNA Biology Laboratory Biological Information Theory Group Frederick, Maryland 21702-1201

Re: [Skim-app-users] Skim 1.6.1

2021-03-01 Thread Thomas Schneider via Skim-app-users
Christiaan: > A new version of Skim is available for download at > <http://skim-app.sourceforge.net/> or using the built-in updater. > > Bugs Fixed > * Separate window title on Big Sur. Works beautifully now! THANKS!!!!! Tom Thomas D. Schneider, Ph.D. Senior In

Re: [Skim-app-users] Skim 1.6.1

2021-03-01 Thread Schneider, Thomas (NIH/NCI) [E] via Skim-app-users
Christiaan: > A new version of Skim is available for download at > <http://skim-app.sourceforge.net/> or using the built-in updater. > > Bugs Fixed > * Separate window title on Big Sur. Works beautifully now! THANKS!!!!! Tom Thomas D. Schneider, Ph.D. Senior In

Re: [Skim-app-users] Big Sur title bar change

2021-02-26 Thread Thomas Schneider via Skim-app-users
Posted with permission. - Forwarded message from "Harrison, James H (jhh5y)" - Date: Fri, 26 Feb 2021 16:14:42 + From: "Harrison, James H (jhh5y)" To: "schne...@mail.nih.gov" Subject: Big Sur title bar change Thomas- I don't have posting privileges to the Skim board right now,

Re: [Skim-app-users] The display of Skim changed

2021-02-26 Thread Schneider, Thomas (NIH/NCI) [E] via Skim-app-users
Christiaan: > We don’t tell it to do this. I don’t know why it would do that. There are a number of changes to macOS that degrade various things. Tom Thomas D. Schneider, Ph.D. Senior Investigator National Institutes of Health National Cancer Institute Center for Cancer Resea

Re: [Skim-app-users] How to share notes between Skim users, please?

2020-12-04 Thread Schneider, Thomas (NIH/NCI) [E] via Skim-app-users
Gudrun: > How to exchange the document with annotated notes between us? You can embed the notes into the pdf. Here's a script to do it: https://alum.mit.edu/www/toms/ftp/skimembed Tom Thomas D. Schneider, Ph.D. Senior Investigator National Institutes of Health National Can

Re: [Skim-app-users] [Frontiers Zendesk] Re: broken PDF '#' vs '%23' on two different computers

2020-11-10 Thread Schneider, Thomas (NIH/NCI) [E] via Skim-app-users
.) Please review that and report the bug to Apple. Thanks, Tom Schneider On 11/10/20, 3:14 AM, "Gerard Matthews (Frontiers Application Support)" wrote: -- Please type your reply above this line -- <https://frontiers.zendesk.com/hc> <http://frontiersin.org>Your request (4

Re: [Skim-app-users] broken PDF '#' vs '%23' on two different computers

2020-11-10 Thread Schneider, Thomas (NIH/NCI) [E] via Skim-app-users
Christiaan: Thanks for looking at this. I told the journal about your messages stored at https://sourceforge.net/p/skim-app/mailman/skim-app-users/?viewmonth=202011=10 Do you have a URL for Apple feedback that would be appropriate? Tom ___

[Skim-app-users] broken PDF '#' vs '%23' on two different computers

2020-11-09 Thread Thomas Schneider via Skim-app-users
in Skim or a bug in the PDF? Tom Thomas D. Schneider, Ph.D. Senior Investigator National Institutes of Health National Cancer Institute Center for Cancer Research RNA Biology Laboratory Biological Information Theory Group Frederick, Maryland 21702-1201 schne...@mail.nih.gov

Re: [Skim-app-users] GoodReader callout bug

2020-09-01 Thread Schneider, Thomas (NIH/NCI) [E] via Skim-app-users
non-standard marking by standard marking. It may be that the callout code has to be specialized to be able to be adjusted. GoodReader: can you do this? Tom Thomas D. Schneider, Ph.D. Senior Investigator National Institutes of Health National Cancer Institute Center for Cancer Research

Re: [Skim-app-users] GoodReader callout bug

2020-09-01 Thread Schneider, Thomas (NIH/NCI) [E] via Skim-app-users
Christiaan: > It sounds they added Line annotations, except they did not encode this as > such. Ok, thanks, maybe that's enough for them to fix it. This has been a severe bug for years. Tom Thomas D. Schneider, Ph.D. Senior Investigator National Institutes of Health National

Re: [Skim-app-users] Flash player no longer supported, what happens to media9 and Skim?

2020-08-01 Thread Thomas Schneider via Skim-app-users
replaces the now obsolete `movie15' package. > * Note that Adobe Reader for Linux has dropped Flash support since > * version 9.4.2. So maybe it's ok, media9 will work after Flash is gone? Tom Thomas D. Schneider, Ph.D. Senior Investigator National Institutes of Health National C

[Skim-app-users] Flash player no longer supported, what happens to media9 and Skim?

2020-08-01 Thread Thomas Schneider via Skim-app-users
rch?client=firefox-b-1-d=flash+player+no+longer+supported Apparently it is to be replaced by HTML5. * What will happen to media9? Is there a replacement? * Can the Skim PDF displayer (for macOS) use HTML5? Tom Thomas D. Schneider, Ph.D. Senior Investigator National Institutes of Health

Re: [Skim-app-users] Batch conversion from skim files to "embedded annotations?

2020-06-18 Thread Schneider, Thomas (NIH/NCI) [E] via Skim-app-users
tps://alum.mit.edu/www/toms/ftp/skimembed You can call this script in a loop in your favorite scripting language. Tom Thomas D. Schneider, Ph.D. Senior Investigator National Institutes of Health National Cancer Institute Center for Cancer Research RNA Biology Laboratory Biological In

Re: [Skim-app-users] Skim 1.5.10

2020-06-18 Thread Schneider, Thomas (NIH/NCI) [E] via Skim-app-users
er circle size (could be '.' too) < - decrease laser circle size (could be ',' too) Tom Thomas D. Schneider, Ph.D. Senior Investigator National Institutes of Health National Cancer Institute Center for Cancer Research RNA Biology Laboratory Biological Information Theory Group

[Skim-app-users] Interview on Skim with Christiaan Hofman

2020-06-17 Thread Thomas Schneider via Skim-app-users
ker for OS X. https://sourceforge.net/blog/june-2020-staff-pick-project-month-skim/ ---- Tom Thomas D. Schneider, Ph.D. Senior Investigator National Institutes of Health National Cancer Institute Center for Cancer Research RNA Biology Laboratory Biological Information Theory Group Frederick,

Re: [Skim-app-users] laser-like dot for Skim

2020-06-14 Thread Schneider, Thomas (NIH/NCI) [E] via Skim-app-users
ces, then click Accessibility. Open Accessibility preferences for me Click Display, then drag the Cursor Size slider to the right to make it larger. --- Thanks for your work on this fabulous program!! Tom Thomas D. Schneider, Ph.D. Senior Investigator National Institutes of Health National C

Re: [Skim-app-users] laser-like dot for Skim

2020-06-12 Thread Schneider, Thomas (NIH/NCI) [E] via Skim-app-users
ontrolled cursor SHOULD be possible to show in presentation mode if the person wants to. Then the question is whether it can be made into a bright easily visible spot. Tom Thomas D. Schneider, Ph.D. Senior Investigator National Institutes of Health National Cancer Institute Center f

Re: [Skim-app-users] laser-like dot for Skim

2020-06-12 Thread Schneider, Thomas (NIH/NCI) [E] via Skim-app-users
Christiaan > There should not be a cursor i presentation mode anyway. I did not understand that at all. "Should" based on what? What is a "cursor i presentation mode"? Do you mean for Skim? Why not? Thanks, Tom Thomas D. Schneider, Ph.D. Senior Investigato

[Skim-app-users] laser-like dot for Skim

2020-06-11 Thread Thomas Schneider via Skim-app-users
, but it would be useful to be able to set the mouse to be a bright laser-like dot in Skim. Has this been implemented some way in Skim? Is it possible in Skim? Maybe there is a system way to do it? Thanks, Tom Thomas D. Schneider, Ph.D. Senior Investigator National Institutes of Health

Re: [Skim-app-users] why is skim opening skype/facetime/etc?

2020-05-24 Thread Thomas Schneider via Skim-app-users
Raptor > > I don't believe there is a way to turn this off, although there > might be a way via Terminal commands. Tom Thomas D. Schneider, Ph.D. Senior Investigator National Institutes of Health National Cancer Institute Center for Cancer Research RNA Biology Laboratory

Re: [Skim-app-users] why is skim opening skype/facetime/etc?

2020-05-24 Thread Schneider, Thomas (NIH/NCI) [E] via Skim-app-users
Here are some suggestions about how to report bugs effectively: How to Report Bugs Effectively by Simon Tatham https://alum.mit.edu/www/toms/bugs.html Tom Thomas D. Schneider, Ph.D. Senior Investigator National Institutes of Health National Cancer Institute Center for Cancer Research RNA B

Re: [Skim-app-users] why is skim opening skype/facetime/etc?

2020-05-24 Thread Schneider, Thomas (NIH/NCI) [E] via Skim-app-users
How about providing a TINY minimal example? Then maybe we can see why the link is being made. Tom Thomas D. Schneider, Ph.D. Senior Investigator National Institutes of Health National Cancer Institute Center for Cancer Research RNA Biology Laboratory Biological Information Theory

Re: [Skim-app-users] present a slideshow in a window instead of full screen

2020-04-16 Thread Schneider, Thomas (NIH/NCI) [E] via Skim-app-users
is indeed one of them. Christian will probably clarify. Christian: Having a way to know what all the current settings are and having a panel that does not disappear when one changes something would help. Tom Thomas D. Schneider, Ph.D. Senior Investigator National Institutes of Health Nati

[Skim-app-users] automatic bibtex (was Re: Updating references)

2020-02-21 Thread Thomas Schneider via Skim-app-users
a file. I then edit my bibliography file BY HAND to upgrade the reference. I do it by hand to avoid disasters of programs doing unexpected things. Tom Thomas D. Schneider, Ph.D. Senior Investigator National Institutes of Health National Cancer Institute Center for Cancer Research R

Re: [Skim-app-users] All old Skim annotations disappeared after SW update

2020-02-17 Thread Schneider, Thomas (NIH/NCI) [E] via Skim-app-users
up: 1. the computer itself. 2. local backup onto a local hard drive separate from the computer 3. cloud backup Tom Thomas D. Schneider, Ph.D. Senior Investigator National Institutes of Health National Cancer Institute Center for Cancer Research RNA Biology Laboratory Biological Information

Re: [Skim-app-users] quitting without prompt to save

2019-03-22 Thread Schneider, Thomas (NIH/NCI) [E] via Skim-app-users
Skim process" set skimprocess = `ps -A | grep Skim | grep -v grep | awk '{print $1}'` echo "Skim process id: $skimprocess" kill -9 $skimprocess === You will need to make it executable: % chmod a+rx killskim You could put that on your desktop. Double click to run it. Tom Thomas

Re: [Skim-app-users] Position after reload without PDF-TeX sync

2018-11-13 Thread Schneider, Thomas (NIH/NCI) [E] via Skim-app-users
with no problem. Now Skim (1.4.36) again stays on the page I'm watching. This demonstrates that it was not a modification of the Preferences of skim - since I didn't change anything else. Thanks much! Tom Thomas D. Schneider, Ph.D. Senior Investigator National Institutes of Health

Re: [Skim-app-users] Position after reload without PDF-TeX sync

2018-11-13 Thread Schneider, Thomas (NIH/NCI) [E] via Skim-app-users
o I can stay in my editor (vim) and never move my fingers from the keyboard to see the changes. Tom Thomas D. Schneider, Ph.D. Senior Investigator National Institutes of Health National Cancer Institute Center for Cancer Research RNA Biology Laboratory Biological Information

Re: [Skim-app-users] Position after reload without PDF-TeX sync

2018-11-13 Thread Schneider, Thomas (NIH/NCI) [E] via Skim-app-users
the same effect with the new version! This is a disaster for me! Tom Thomas D. Schneider, Ph.D. Senior Investigator National Institutes of Health National Cancer Institute Center for Cancer Research RNA Biology Laboratory Biological Information Theory Group Frederick, Maryland 217

Re: [Skim-app-users] Skim constantly crashing when used as a viewer for LyX

2018-10-21 Thread Schneider, Thomas (NIH/NCI) [E] via Skim-app-users
Jerry: > When using Skim as a PDF viewer for LyX, Skim crashes frequently > when attempting to show a newly rendered version of the document. It > doesn’t crash the first time but usually on the second to maybe > fourth update from LyX. Does anyone else have this problem? I've had similar

Re: [Skim-app-users] Suddenly Skim is turning highlight text into Notes!

2018-09-12 Thread Schneider, Thomas (NIH/NCI) [E]
eneral for creating and maintaining Skim!! Regards, Tom Thomas D. Schneider, Ph.D. Senior Investigator National Institutes of Health National Cancer Institute Center for Cancer Research RNA Biology Laboratory Biological Information Theory Group Frederick, Maryland 2170

[Skim-app-users] Suddenly Skim is turning highlight text into Notes!

2018-09-12 Thread Thomas Schneider
back where I started. Is this a new "feature"? If so PLEASE don't do this! How do I stop it? It is ruining my work flow! Tom Thomas D. Schneider, Ph.D. Senior Investigator National Institutes of Health National Cancer Institute Center for Cancer Research RNA Biology

Re: [Skim-app-users] Automatic file reload slow to reload

2018-09-05 Thread Schneider, Thomas (NIH/NCI) [E]
-o cpu Then topcpu will show you what process(es) are hogging things. By the way, check out this way of triggering the latex run: https://alum.mit.edu/www/toms/atchange.html Tom Thomas D. Schneider, Ph.D. Senior Investigator National Institutes of Health National Cancer Institute

[Skim-app-users] Update to 1.4.34 refused

2018-04-11 Thread Thomas Schneider
rsion available." Is this a delay in posting? The machines are almost certainly coming from different networks. Tom Thomas D. Schneider, Ph.D. Senior Investigator National Institutes of Health National Cancer Institute Center for Cancer Research RNA Biology Laboratory Biological I

Re: [Skim-app-users] trick to work around Skim scroll problem

2018-01-30 Thread Schneider, Thomas (NIH/NCI) [E]
. But it fails the next time even if I 'Use Current View Settings as Default'. Tom Thomas D. Schneider, Ph.D. Senior Investigator National Institutes of Health National Cancer Institute Center for Cancer Research RNA Biology Laboratory Biological Information Theory Group Frederick,

Re: [Skim-app-users] trick to work around Skim scroll problem

2018-01-30 Thread Schneider, Thomas (NIH/NCI) [E]
Iliya: > In PDFs derived by compiling LaTex files there is no such a problem... Unfortunately on my machine (Mac OS 10.12.6) it is a problem! Tom Thomas D. Schneider, Ph.D. Senior Investigator National Institutes of Health National Cancer Institute Center for Cancer Research

[Skim-app-users] trick to work around Skim scroll problem

2018-01-30 Thread Thomas Schneider
the page slightly. Then set Zoom to Fit and expand the view slightly. Then one can scroll through the document. So far this has worked on several documents (scientific papers). I'm wondering if there might be a way to automate this. Tom Thomas D. Schneider, Ph.D. Senior Investigator National

Re: [Skim-app-users] page settings in skim

2018-01-25 Thread Thomas Schneider
s D. Schneider, Ph.D. Senior Investigator National Institutes of Health National Cancer Institute Center for Cancer Research RNA Biology Laboratory Biological Information Theory Group Frederick, Maryland 21702-1201 schne...@mail.nih.gov https://schneider.ncifcrf.gov (current l

[Skim-app-users] page settings in skim

2017-12-13 Thread Thomas Schneider
if this is not a bug. Tom Thomas D. Schneider, Ph.D. Senior Investigator National Institutes of Health National Cancer Institute Center for Cancer Research RNA Biology Laboratory Molecular Information Theory Group Frederick, Maryland 21702-1201 schne...@mail.nih.gov https

Re: [Skim-app-users] Scrolling in Zoom to fit

2017-11-06 Thread Schneider, Thomas (NIH/NCI) [E]
ved! With a fresh copy of Skim 1.4.30 I can scroll both ways with no problems. Maybe that setting got lost somehow? Tom Thomas D. Schneider, Ph.D. Senior Investigator National Institutes of Health National Cancer Institute Center for Cancer Research RNA Biology Laboratory Molecular

[Skim-app-users] Scrolling in Zoom to fit

2017-11-06 Thread Schneider, Thomas (NIH/NCI) [E]
. A similar thing happens using the arrow keys. Tom Thomas D. Schneider, Ph.D. Senior Investigator National Institutes of Health National Cancer Institute Center for Cancer Research RNA Biology Laboratory Molecular Information Theory Group Frederick, Maryland 21702-1201 schne

Re: [Skim-app-users] Skim 1.4.29

2017-05-02 Thread Schneider, Thomas (NIH/NCI) [E]
22:20 EST) I gave up and directly downloaded from SourceForge. I still have the old version (zipped) and could go back to try the update again, but I won't do this unless you need me to try the update again. Regards, Tom Thomas D. Schneider, Ph.D. Senior Investigator National Institut

Re: [Skim-app-users] Skim 1.4.29

2017-04-29 Thread Schneider, Thomas (NIH/NCI) [E]
e. > You may want to update from the website. Ok, thanks, I'll try that if we don't figure it out. Tom Thomas D. Schneider, Ph.D. Senior Investigator National Institutes of Health National Cancer Institute Center for Cancer Research RNA Biology Laboratory Molecular Information The

Re: [Skim-app-users] Skim 1.4.29

2017-04-29 Thread Schneider
ake ALL text of popups be cut/pasteable [if you can]. Tom Thomas D. Schneider, Ph.D. Senior Investigator National Institutes of Health National Cancer Institute Center for Cancer Research RNA Biology Laboratory Molecular Information Theory Group Frederick, Maryland 21702-

Re: [Skim-app-users] Skim 1.4.29

2017-04-29 Thread Schneider, Thomas (NIH/NCI) [E]
have a clear connection to the internet. Any idea what's wrong or what to do? Previous updates went ok. Tom Thomas D. Schneider, Ph.D. Senior Investigator National Institutes of Health National Cancer Institute Center for Cancer Research RNA Biology Laboratory Molecular Information

Re: [Skim-app-users] How include notes in saved or exported file for viewing by other applications?

2016-07-21 Thread Schneider, Thomas (NIH/NCI) [E]
d the marks into the PDF: https://alum.mit.edu/www/toms/ftp/skimembed Tom Thomas D. Schneider, Ph.D. Senior Investigator National Institutes of Health National Cancer Institute Center for Cancer Research Gene Regulation and Chromosome Biology Laboratory Molecular Information Theory Gro

Re: [Skim-app-users] iPad sync

2016-02-17 Thread Schneider
atch your PDF directory and do conversions when it changes. You could launch the atchange into the background when you log in but you may need a locking system to make sure that any previous processes still running as 'zombies' are removed. Tom Thomas D. Schneider, Ph.D. Senior Investigator

[Skim-app-users] unable to set preferences?

2015-10-27 Thread Schneider
I prefer to ALWAYS "Zoom to Fit". So I set that but it does not stick even if I "Use Current View Settings as Default". What am I doing wrong? This seems to have happened after a recent Skim upgrade or Mac OS X "upgrade" to 10.10.5. Tom Thomas D. Schneide

Re: [Skim-app-users] unable to set preferences?

2015-10-27 Thread Schneider
pose that I "knew" that several years ago but I can't see what the settings are when I "Use Current View Settings as Default". Maybe there could be a way to make that visible. Then I (and others) would know what is being saved as "settings" and what the options for them

Re: [Skim-app-users] unable to set preferences?

2015-10-27 Thread Schneider
atically Resize", then at least the window is large each time. Tom Thomas D. Schneider, Ph.D. Senior Investigator National Institutes of Health National Cancer Institute Center for Cancer Research Gene Regulation and Chromosome Biology Laboratory Molecular Infor

Re: [Skim-app-users] automate continuous scrolling display of PDFs

2015-01-06 Thread Schneider
end Adam, would that be fast enough or guarantee that it would not crash? Tom Thomas D. Schneider, Ph.D. Senior Investigator National Institutes of Health National Cancer Institute Center for Cancer Research

Re: [Skim-app-users] automate continuous scrolling display of PDFs

2015-01-06 Thread Schneider
. A hard link would switch very quickly. I'm not sure what the other potential problems you are thinking of are. Tom Thomas D. Schneider, Ph.D. Senior Investigator National Institutes of Health National Cancer Institute Center for Cancer Research Gene Regulation and Chromosome Biology

Re: [Skim-app-users] automate continuous scrolling display of PDFs

2015-01-05 Thread Schneider
Thomas D. Schneider, Ph.D. Senior Investigator National Institutes of Health National Cancer Institute Center for Cancer Research Gene Regulation and Chromosome Biology Laboratory Molecular Information Theory Group Frederick, Maryland 21702-1201 http://schneider.ncifcrf.gov

Re: [Skim-app-users] automate continuous scrolling display of PDFs

2015-01-05 Thread Schneider
from my viewpoint. Tom Thomas D. Schneider, Ph.D. Senior Investigator National Institutes of Health National Cancer Institute Center for Cancer Research Gene Regulation and Chromosome Biology Laboratory Molecular Information Theory Group Frederick, Maryland 21702-1201 schne

Re: [Skim-app-users] Variables defined by Skim for reverse sync

2014-12-11 Thread Schneider
Dominique: Thanks for the explanation. When you get it worked out please do release your scripts. Tom Thomas D. Schneider, Ph.D. Senior Investigator National Institutes of Health National Cancer Institute Center for Cancer Research Gene Regulation and Chromosome Biology Laboratory

Re: [Skim-app-users] Variables defined by Skim for reverse sync

2014-12-09 Thread Schneider
of having one vim running. Why are you doing this? What is the advantage of having vim as a server? How do you work that you need this? Tom Thomas D. Schneider, Ph.D. Senior Investigator National Institutes of Health National Cancer Institute Center for Cancer Research Gene Regulation

Re: [Skim-app-users] iAnnotate Skim

2014-11-22 Thread Schneider
at a later point, with the highlights readily available in Skim. I've been using Goodreader on the iPad and Adobe Acrobat (regular and professional) or Skim and they work fine together. Tom Thomas D. Schneider, Ph.D. Senior Investigator National Institutes of Health National Cancer Institute

Re: [Skim-app-users] convert notes

2014-09-27 Thread Schneider
. To make the notes part of the PDF itself one has to embed them. I have a script that does this from the command line: http://alum.mit.edu/www/toms/ftp/skimembed I hope that helps. Tom Thomas D. Schneider, Ph.D. Senior Investigator National Institutes of Health National Cancer

Re: [Skim-app-users] suggestion for skim: slider

2014-06-13 Thread Schneider
any trouble stopping the scrolling for any arbitary page (I timed myself seeing how long it would take me to get to random pre-selected pages that way) Thanks for pointing out these functions!! (Note to self: RTFM?) Tom Thomas D. Schneider, Ph.D. Senior Investigator National Institutes

Re: [Skim-app-users] suggestion for skim: slider

2014-06-13 Thread Schneider
can just type a page number without anything else, at least when the PDF has the focus. Moreover, key repeat: hold a key to repeat the action fast. Thanks for the tips!! Tom Thomas D. Schneider, Ph.D. Senior Investigator National Institutes of Health National Cancer Institute Center

Re: [Skim-app-users] suggestion for skim: slider

2014-06-12 Thread Schneider
. It allows one to scroll rapidly through the document with precise page by page steps. Looks like it could be another option if it is technically possible. Tom Thomas D. Schneider, Ph.D. Senior Investigator National Institutes of Health National Cancer Institute Center for Cancer Research Gene

[Skim-app-users] suggestion for skim: slider

2014-06-11 Thread Schneider
useful. Tom Thomas D. Schneider, Ph.D. Senior Investigator National Institutes of Health National Cancer Institute Center for Cancer Research Gene Regulation and Chromosome Biology Laboratory Molecular Information Theory Group Frederick, Maryland 21702-1201 http

Re: [Skim-app-users] Flicker Upon Revert (Very Annoying)

2014-03-18 Thread Thomas Schneider
the method in my script: http://alum.mit.edu/www/toms/ftp/skim So maybe you can just bypass the problem. (While you are at it, check out: http://alum.mit.edu/www/toms/atchange.html ) Tom Thomas D. Schneider, Ph.D. Senior Investigator National Institutes of Health National Cancer Institute

Re: [Skim-app-users] spotlight comments to anchored note?

2014-02-01 Thread Thomas Schneider
Josh: I'm wondering if anyone else out there might have written a code or devised another method to turn spotlight comments on a PDF into an anchored note at the top of a document in Skim. http://alum.mit.edu/www/toms/ftp/skimembed does what you want?? Tom Thomas D. Schneider, Ph.D

Re: [Skim-app-users] bug in skim: rotation right button

2014-01-08 Thread Thomas Schneider
Christiaan: Thanks, I'll have that fixed for the next release. Great! BTW, the combined button should work correctly. Yes, it does, sorry my description wasn't so clear. Tom Thomas D. Schneider, Ph.D. Senior Investigator National Institutes of Health National Cancer Institute

[Skim-app-users] scroll problem with Skim

2014-01-08 Thread Thomas Schneider
... but it only scrolls to lower page numbers! That's why it seemed not to be working - the PDF starts on the first page and scrolling is only allowed to be negative so nothing happens. This appears to be a bug. Tom Thomas D. Schneider, Ph.D. Senior Investigator National Institutes of Health

[Skim-app-users] bug in skim: rotation right button

2014-01-07 Thread Thomas Schneider
(81) which is the latest one. Regards, Tom Thomas D. Schneider, Ph.D. Senior Investigator National Institutes of Health National Cancer Institute Center for Cancer Research Gene Regulation and Chromosome Biology Laboratory Molecular Information Theory Group Frederick, Maryland

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