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hat process named "httpd" on the list. My Windows is vista
> version.
> Do I need to install the Apache?
>
> Thanks,
>
> Yoona
>
> On Fri, Jan 28, 2011 at 10:08 AM, Joe Slagel
> wrote:
>
>> On Windows, you should see an little Apache services icon in yo
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Department of Structural Biology and Bioinformatics
> University Medical Center (CMU), University of Geneva
> 1 rue Michel Servet, 1211 Geneva 4, Switzerland
> Phone: +41 (0)22 379 41 69
> Fax: +41 (0)22 379 55 02
> Email: christine.hoogl...@unige.ch
> --
BTW, in the example where I use "ls *", you may actually need to do a "find
. -name '*.pep.xml' -maxdepth 2".
On Wed, Dec 8, 2010 at 2:54 PM, Joe Slagel wrote:
> Andreas,
>
> There are a couple of options that I can think of depending on exactly what
> y
:-)!
>
> cheers,
> andreas
>
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Institute for Systems Biology
jsla...@systemsbiology.org
(206) 732-1362
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You received this message because you are subscr
age (http://tools.proteomecenter.org/
> wiki/index.php?title=Msconvert_Capabilities<http://tools.proteomecenter.org/%0Awiki/index.php?title=Msconvert_Capabilities>).
> It does work with
> MassLynx .raw files, right?
>
> Thanks,
> Sam
>
> On Nov 12, 2:14 pm, Joe Slagel wrote:
>
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eadme file in TPP/src as well
as the wiki.
The TPP Team: Luis, David, Joe, Eric, Brian, Natalie, and Jimmy plus all
other developers who contributed to this release from the ISB. Thanks to
developers and users from the TPP's user community who provided feedback and
code cont
s
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Joe Slagel
Institute for Systems Biology
jsla...@systemsbiology.org
(206)
/singleton.hpp:
>>> At global scope:
>>> /cluster/apps/tpp/4.4.0/src/../extern/ProteoWizard/pwiz/libraries/boost_aux/boost/utility/singleton.hpp:176:
>>> error: wrong number of template arguments (2, should be 3)
>>> /cluster/apps/tpp/4.4.0/src/../extern/Proteo
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40/src/../build/linux/PepcView/
> PepcView.html] Error 1
>
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10_08.fasta""
>> >>>
>> >>> command "C:/Inetpub/tpp-bin/RefreshParser "myri_test_interact.pep.xml"
>> >>> "C:\Inetpub\wwwroot\ISB\data\dbase
>> >>> \uniprot_human_CP_canonical_isoform_cRAP_decoy_2010_08.fasta"&qu
>>>
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You received this message because you are sub
; this?
> >
> > >> >> > > >> > --
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;;, and in your check_env.pl output the HTTP_HOST is listed
as "host". Are you perhaps using virtual hosts in your Apache
configuration?
-
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e preprocessing that isn't
>> strictly necessary, for Agilent ".d" files at least?
>>
>> Thanks,
>> bio.x2y
>>
>>
>>
>
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You received this messag
B.01.04).
> >
> > > Sincerely
> >
> > > Mauri
>
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d!
>
> - Austin
>
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> spctools-discuss+
red inside files
> of course as MSPeak.bin or MSProfile.bin. IIRC you can pass it any of
> those three (the .d directory, or the .bin files). Also, a MassHunter
> installation is not required for either trapper or msconvert - it makes
> no difference.
>
> -Matt
>
>
> Joe Slagel
ce trapper in the near future.
>
> -Natalie
>
>
>
>
> On Oct 6, 2009, at 3:29 PM, Joe Slagel wrote:
>
> Hi all,
>
> One of our users also just ran into the exact same problem. Her system has
> .Net framework 3.5sp1, TPP 4.3.1, trapper, and the MassHunter (B1.03?)
&
ed3.d
> c:\andreasquandt\data\E_QTOF\E09_100209_RS_fasted3.c.mzXML
>
> ERROR at .\MHDACWrapper.cpp, 49:
> HR = -2147221164
> ERROR - CoCreateInstance failed.
> unable to open c:\andreasquandt\data\E_QTOF\E09_100209_RS_fasted3.d with
> MassHun
> ter interface
>
> would be great if anyone co
Debian Etch server.
>
> Eliza.
>
> On Sep 26, 1:20 am, Joe Slagel wrote:
> > Eliza,
> >
> > I may have another alternative for you, but I can't make any promises
> it'll
> > work. I played around a little today with building rpb/deb packages for
> &
ackage
that will work for you.
To install it, use dpkg as so:
% dpkg -i tpp_4.3.1-1_amd64.deb
The default installation location is /usr/tpp.
Cheers,
Joe
P.S. You should consider it very *EXPERIMENTAL* as I only tested a few
simple operations.
On Fri, Sep 25, 2009 at 2:00 PM, Joe Slagel wrot
> > > >>>>>> [mailto:spctools-disc...@googlegroups.com] On Behalf Of Eliza
> > > > >>>>>> Sent: Thursday, August 27, 2009 12:13 AM
> > > > >>>>>> To: spctools-discuss
> > > &g
er allow,deny
>Allow from all
>
> Alias /tandem/ "/var/www/thegpm/tandem/"
>
>
>Options Indexes MultiViews
>AllowOverride None
> Order allow,deny
>Allow from all
>
> Alias /cache/ "/var
oceeding with undefined results
> [Sat Aug 29 17:41:45 2009] [warn] NameVirtualHost *:80 has no
> VirtualHosts
>
> [ OK ]
> -
> Does this point me towards where I am going wrong?
> Regards,
> Achim
>
> On Aug 25, 10:39 pm, J
--
> The requested URL /tpp/cgi-bin/tpp_gui.pl was not found on this
> server.
> Apache/2.2.11 (Ubuntu) PHP/5.2.6-3ubuntu4.2 with Suhosin-Patch Server
> at linux01 Port 80
> ------
>
> Thanks a million
ml
> drwxr-xr-x 2 root root 4096 2009-08-24 11:13 tppschema
> end terminal output -------
>
> Does this indicate that I have done something wrong during the
> installation process or that the file structure might have changed
> slightly, without t
terminal -------
>
> Anybody's help is very much appreciated.
>
> Thanks a lot in advance,
>
> Achim
>
> --
> Achim Treumann
> NEPAF, Newcastle upon Tyne, UK
>
> >
>
--
Joe Slagel
Institute for Systems Biology
jsla...@systemsbiology.org
(206) 732-1362
PLIB_SWIG -o /root/tpp-4.2.1/src/../build/
> > linux/
> > tpplib_perl_wrap.o ./tpplib/tpplib_perl_wrap.cxx 2> /dev/null
> > make[1]: *** [/root/tpp-4.2.1/src/../build/linux/tpplib_perl.so] Error
> > 1
> > make[1]: Leaving directory `/root/tpp-4.2.1/src'
> > mak
Timeout 18000
>
> I changed the timeout to 36 (100 hours) and now I can have
> searches running all weekend without stalling. Thanks, Jimmy!
>
> Do any of the developers know if setting "Timeout 0" or just deleting
> that line will eliminate the
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