Messages by Thread
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[Bioc-sig-seq] org.Sc.sgd.db: Yeast ensembl ID to entrez ID conversion problem
Zhu, Julie
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Re: [Bioc-sig-seq] ChIPpeakAnno get sequences from ranged data
Zhu, Julie
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[Bioc-sig-seq] .gff from AlignedRead
joseph
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[Bioc-sig-seq] GenomicFeatures, biomart support
[email protected]
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Re: [Bioc-sig-seq] Favor: ChIPpeakAnno
Zhu, Julie
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[Bioc-sig-seq] Vector of RangedData
Zhu, Julie
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Re: [Bioc-sig-seq] Rsamtools installation
Hervé Pagès
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[Bioc-sig-seq] GenomicFeatures, error message
[email protected]
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[Bioc-sig-seq] ChIPpeakAnno, BioMart, getAnnotation 'Exon' error message
[email protected]
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Re: [Bioc-sig-seq] ChIPpeakAnno, BioMart, getAnnotation 'Exon' error message
Zhu, Julie
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Re: [Bioc-sig-seq] ChIPpeakAnno, BioMart, getAnnotation 'Exon' error message
Wolfgang Huber
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Re: [Bioc-sig-seq] ChIPpeakAnno, BioMart, getAnnotation 'Exon' error message
Zhu, Julie
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Re: [Bioc-sig-seq] ChIPpeakAnno, BioMart, getAnnotation 'Exon' error message
Steffen Durinck
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Re: [Bioc-sig-seq] ChIPpeakAnno, BioMart, getAnnotation 'Exon' error message
Zhu, Julie
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Re: [Bioc-sig-seq] ChIPpeakAnno, BioMart, getAnnotation 'Exon' error message
Zhu, Julie
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[Bioc-sig-seq] genomicFeatures, rangedData vs GRanges objects
[email protected]
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[Bioc-sig-seq] Overlap of multiple RangedData instances.
Ivan Gregoretti
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[Bioc-sig-seq] RangedData: sorting problem
Zhu, Julie
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[Bioc-sig-seq] Optimizing the generation of reads w/Biostrings.
bullard
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[Bioc-sig-seq] mapping coordinates
Jason Lu
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[Bioc-sig-seq] Of Mice and Lattice: twenty chromosomes and 7 automatic colours.
Ivan Gregoretti
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[Bioc-sig-seq] ChIPpeakAnno annotatePeakInBatch function
Amy Molesworth
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[Bioc-sig-seq] novoalign format support
Wu, Xiwei
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[Bioc-sig-seq] BSGenome: Intermittent failure in getSeq, matchPattern and findOverlaps
Aaron Statham
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[Bioc-sig-seq] goseq or edgeR error
joseph
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[Bioc-sig-seq] potential bug either in strandFilter (ShortRead) or estimate.mean.fraglen (chipseq)
Johannes Rainer
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[Bioc-sig-seq] chipseq: error in estimate.mean.fraglen method="correlation"
Johannes Rainer
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[Bioc-sig-seq] makeTranscriptDbFromUCSC question
joseph
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[Bioc-sig-seq] GenomicFeatures vignette error
joseph
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[Bioc-sig-seq] Parallel version of the Biostrings::read.DNAStringSet and write.XStringSet functions ?
Sirisha Sunkara
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[Bioc-sig-seq] Getting optional fields from BAM file using Rsamtools
Steve Lianoglou
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[Bioc-sig-seq] chipseq infrastructure
Michael Lawrence
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[Bioc-sig-seq] peak calling/detection algorithm available in Bioconductor?
Johannes Rainer
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[Bioc-sig-seq] strand() in ShortRead, Rsamtools
Martin Morgan
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[Bioc-sig-seq] GRanges object from AlignedRead?
joseph
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[Bioc-sig-seq] Arabidopsis reference genome
Michael Krogh Jensen
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[Bioc-sig-seq] error with export {rtracklayer}
joseph
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[Bioc-sig-seq] ShortRead support for "id", "paired read number" and "multiplex index" when reading an Illumina export file
Nicolas Delhomme
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[Bioc-sig-seq] geneMouse dataset from chipseq
Fuad Gwadry
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[Bioc-sig-seq] apply/sapply for DNAStringSet class or FastqQuality class?
Johannes Rainer
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[Bioc-sig-seq] BSgenome installation error from SVN
Nicolas Delhomme
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[Bioc-sig-seq] ReadFastq error
Ramzi TEMANNI
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[Bioc-sig-seq] trimLRPatters: inconstitency re max.[LR]mismatch
Simon Anders
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[Bioc-sig-seq] Rsamtools problem
Droit Arnaud
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[Bioc-sig-seq] Using SVN for a "data package" with HTS data -- howto???
Leonardo Collado Torres
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[Bioc-sig-seq] RangedData objects. Redefining widths with conditions.
Ivan Gregoretti
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[Bioc-sig-seq] locally aligned reads
Hans-Ulrich Klein
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[Bioc-sig-seq] ShortRead sequences
Droit Arnaud
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[Bioc-sig-seq] extendReads in package chipseq - reads are extended below zero
Nora Rieber
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[Bioc-sig-seq] Sorting RangedData
Ivan Gregoretti
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[Bioc-sig-seq] srFilter function in ShortRead
joseph
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[Bioc-sig-seq] skip the comment lines with read.BStringSet
burak kutlu
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Re: [Bioc-sig-seq] ChIPpeakAnno fails to interpret standard chromosome name and strandedness
Julie Zhu
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[Bioc-sig-seq] identifying a common motif in a set of sequences
Johannes Rainer