Re: Representing mu in bibliography source file

[Rich Shepard]

On Wed, 6 Mar 2024, Herbert Voss wrote:


It should be an upright mu for a unit


Herbert,

Of course. It's not in a mathematical expression.

Regards,

Rich
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Re: Representing mu in bibliography source file

[Herbert Voss]

Rich Shepard schrieb:
> On Wed, 6 Mar 2024, Herbert Voss wrote:
>
>>> You can put "$\mu$g" in a BibTeX entry and it should display properly
>>> in
>>> the document.
>>
>> \textmu{}g for an upright µ
>
> Herbert,
>
> That's a better solution for upright text.

 see
https://www.nist.gov/pml/special-publication-811/nist-guide-si-chapter-6-rules-and-style-conventions-printing-and-using
6.2.3

It should be an upright mu for a unit

Herbert



>
> Thank you,
>
> Rich
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Re: Representing mu in bibliography source file

[Herbert Voss]

Rich Shepard schrieb:
> On Wed, 6 Mar 2024, Herbert Voss wrote:
>
>>> You can put "$\mu$g" in a BibTeX entry and it should display properly
>>> in
>>> the document.
>>
>> \textmu{}g for an upright µ
>
> Herbert,
>
> That's a better solution for upright text.

 see
https://www.nist.gov/pml/special-publication-811/nist-guide-si-chapter-6-rules-and-style-conventions-printing-and-using
6.2.3

It should be an upright mu for a unit

Herbert



>
> Thank you,
>
> Rich
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Re: Representing mu in bibliography source file

[Rich Shepard]

On Wed, 6 Mar 2024, Herbert Voss wrote:

You can put "$\mu$g" in a BibTeX entry and it should display properly in 
the document.


\textmu{}g for an upright µ


Herbert,

That's a better solution for upright text.

Thank you,

Rich
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Re: Representing mu in bibliography source file

[Herbert Voss]

Am 06.03.24 um 17:47 schrieb Paul Rubin:



On 3/6/24 10:50, Rich Shepard wrote:
I use JabRef for my bibliography database; it's in ASCII text file 
format. Some
abstracts report concentrations in micrograms and have been entered 
as 'ug.'

How can I enter the mu symbol so it displays properly in LyX documents?

Looking in /usr/share/X11/en_US.UTF-8/Compose I see multikey solutions;
i.e.,
      : "µ"    mu # MICRO SIGN
      : "µ"    mu # MICRO SIGN
      : "µ"    mu # MICRO SIGN
but while these work in text files, they're not the same as \mu in 
LaTeX.


Help's appreciated.

Regards,

Rich
You can put "$\mu$g" in a BibTeX entry and it should display properly 
in the document.


\textmu{}g for an upright µ

Herbert
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Re: Representing mu in bibliography source file

[Rich Shepard]

On Wed, 6 Mar 2024, Paul Rubin wrote:


You can put "$\mu$g" in a BibTeX entry and it should display properly in
the document.


Paul,

I wondered about that. Thanks for the suggestion.

Regards,

Rich
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Re: Representing mu in bibliography source file

[Paul Rubin]

On 3/6/24 10:50, Rich Shepard wrote:
I use JabRef for my bibliography database; it's in ASCII text file 
format. Some
abstracts report concentrations in micrograms and have been entered as 
'ug.'

How can I enter the mu symbol so it displays properly in LyX documents?

Looking in /usr/share/X11/en_US.UTF-8/Compose I see multikey solutions;
i.e.,
      : "µ"    mu # MICRO SIGN
      : "µ"    mu # MICRO SIGN
      : "µ"    mu # MICRO SIGN
but while these work in text files, they're not the same as \mu in LaTeX.

Help's appreciated.

Regards,

Rich
You can put "$\mu$g" in a BibTeX entry and it should display properly in 
the document.


Paul

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Representing mu in bibliography source file

[Rich Shepard]

I use JabRef for my bibliography database; it's in ASCII text file format. Some
abstracts report concentrations in micrograms and have been entered as 'ug.'
How can I enter the mu symbol so it displays properly in LyX documents?

Looking in /usr/share/X11/en_US.UTF-8/Compose I see multikey solutions;
i.e.,
 : "µ" mu # MICRO SIGN
 : "µ" mu # MICRO SIGN
 : "µ" mu # MICRO SIGN
but while these work in text files, they're not the same as \mu in LaTeX.

Help's appreciated.

Regards,

Rich
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Re: Reducing Bibliography font

[Jürgen Spitzmüller]

Am Freitag, dem 16.02.2024 um 18:33 + schrieb Berman, Leonard via
lyx-users:
> My bibliography is printing in some GIGANTIC font.  Everything else 
> looks great.  Any thoughts?

You BibTeX inset is in a part paragraph. Change that to standard.

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Re: Reducing Bibliography font

[Eckhard Höffner]

Am 16.02.24 um 19:33 schrieb Berman, Leonard via lyx-users:

My bibliography is printing in some GIGANTIC font.  Everything else
looks great.  Any thoughts?



I use

\begin{footnotesize}
 \renewcommand*{\bibfont}{\footnotesize}

BIBLIOGRAPHY
LIST OF TABLES

\end{footnotesize}


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Reducing Bibliography font

[Berman, Leonard via lyx-users]

My bibliography is printing in some GIGANTIC font.  Everything else 
looks great.  Any thoughts?

Thanks

--Len

The end of my lyx file is:

\begin_layout Part*
\begin_inset CommandInset bibtex
LatexCommand bibtex
btprint "btPrintCited"
bibfiles "What_is_Life"
options "plain"

\end_inset

\end_layout


Bibliography Style: Basic

Bibtex style: plain



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Re: Bibliography not shown in compiled PDF

[Herbert Voss]

Am 05.12.23 um 23:25 schrieb Rich Shepard:

On Tue, 5 Dec 2023, Rich Shepard wrote:


I just updated texlive2023; it showed utf8 as the encoding during the
process. Then I created a new KOMA-Script Report class called test.lyx
(attached). When I exported this file using LaTeX (pdflatex) it had 
latin

rather than utf8 as the input encoding.


Sigh. Again fingers were quicker than the brain.

Attachment here.



This one looks good. If I inserted citations from your
example bib everything is fine

Herrbert
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Re: Bibliography not shown in compiled PDF

[Rich Shepard]

On Tue, 5 Dec 2023, Rich Shepard wrote:


I just updated texlive2023; it showed utf8 as the encoding during the
process. Then I created a new KOMA-Script Report class called test.lyx
(attached). When I exported this file using LaTeX (pdflatex) it had latin
rather than utf8 as the input encoding.


Sigh. Again fingers were quicker than the brain.

Attachment here.

Rich#LyX 2.3 created this file. For more info see http://www.lyx.org/
\lyxformat 544
\begin_document
\begin_header
\save_transient_properties true
\origin unavailable
\textclass scrreprt
\begin_preamble
\date{}
\usepackage{mathpazo,amssymb}
\usepackage{graphicx,relsize}
\usepackage{scrlayer-scrpage}
\pagestyle{scrheadings}
\end_preamble
\use_default_options false
\maintain_unincluded_children false
\language english
\language_package default
\inputencoding auto
\fontencoding global
\font_roman "palatino" "default"
\font_sans "avant" "default"
\font_typewriter "courier" "default"
\font_math "auto" "auto"
\font_default_family rmdefault
\use_non_tex_fonts false
\font_sc true
\font_osf false
\font_sf_scale 100 100
\font_tt_scale 100 100
\use_microtype false
\use_dash_ligatures false
\graphics default
\default_output_format default
\output_sync 0
\bibtex_command biber mergedate=compact
\index_command default
\paperfontsize 11
\spacing single
\use_hyperref false
\papersize executivepaper
\use_geometry true
\use_package amsmath 1
\use_package amssymb 1
\use_package cancel 0
\use_package esint 0
\use_package mathdots 1
\use_package mathtools 0
\use_package mhchem 1
\use_package stackrel 0
\use_package stmaryrd 0
\use_package undertilde 0
\cite_engine biblatex-natbib
\cite_engine_type authoryear
\biblatex_bibstyle authoryear
\biblatex_citestyle authoryear
\use_bibtopic false
\use_indices false
\paperorientation portrait
\suppress_date false
\justification true
\use_refstyle 0
\use_minted 0
\index Index
\shortcut idx
\color #008000
\end_index
\paperwidth 6in
\paperheight 9in
\leftmargin 0.75in
\topmargin 0.5in
\rightmargin 0.5in
\bottommargin 0.5in
\secnumdepth 3
\tocdepth 3
\paragraph_separation indent
\paragraph_indentation default
\is_math_indent 0
\math_numbering_side default
\quotes_style english
\dynamic_quotes 0
\papercolumns 1
\papersides 2
\paperpagestyle default
\tracking_changes false
\output_changes false
\html_math_output 0
\html_css_as_file 0
\html_be_strict false
\end_header

\begin_body

\begin_layout Standard
Some text here.
\end_layout

\end_body
\end_document
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Re: Bibliography not shown in compiled PDF

[Rich Shepard]

On Tue, 5 Dec 2023, Rich Shepard wrote:


That is the user preamble! It _must_ be inserted by you.


Herbert,

I just updated texlive2023; it showed utf8 as the encoding during the
process. Then I created a new KOMA-Script Report class called test.lyx
(attached). When I exported this file using LaTeX (pdflatex) it had latin
rather than utf8 as the input encoding.

How can I change this in TeXLive2023 to force the input encoding to utf8?
This is all new.

Regards,

Rich

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Re: Bibliography not shown in compiled PDF

[Rich Shepard]

On Tue, 5 Dec 2023, Herbert Voss wrote:


That is the user preamble! It _must_ be inserted by you.


Herbert,

Here's the top of the preamble in a KOMA-Script report I revised a couple of
weeks ago:

%% LyX 2.3.6.1 created this file.  For more info, see http://www.lyx.org/.
%% Do not edit unless you really know what you are doing.
\documentclass[twoside,headsepline=on, footsepline=on]{scrreprt}
\PassOptionsToPackage{natbib=true}{biblatex}
\usepackage[T1]{fontenc}
\usepackage[utf8]{inputenc}
\usepackage[letterpaper]{geometry}
\geometry{verbose,tmargin=4cm,bmargin=2cm,lmargin=2cm,headsep=1.5cm}
\pagestyle{plain}
\setcounter{secnumdepth}{3}
\setcounter{tocdepth}{3}
\setlength{\parskip}{\medskipamount}
\setlength{\parindent}{0pt}
\usepackage{array}
\usepackage{textcomp}
\usepackage{url}
\usepackage{pdfpages}
\usepackage{graphicx}

Why the new doc uses latin9 rather than utf8 is the issue.

These are what's in Documents -> Settings -> Preamble:

\date{}
\usepackage{mathpazo,amssymb}
\usepackage{graphicx,relsize}
\usepackage{scrlayer-scrpage}
\usepackage{xcolor,colortbl}
\definecolor{lightgray}{gray}{0.8}
\pagestyle{scrheadings}
\lehead{Biological Evaluation}
\rohead{Biological Evaluation}
\refoot{Applied Ecosystem Services, LLC}
\lofoot{Applied Ecosystem Services, LLC}
\automark*{section}

Regards,

Rich
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Re: Bibliography not shown in compiled PDF

[Rich Shepard]

On Tue, 5 Dec 2023, Herbert Voss wrote:


That is the user preamble! It _must_ be inserted by you.


Herbert,

Well, it's not in Documents -> Settings -> Preamble and I had no reason add
it and was unaware that it was in the .tex file.


It was a wrong font encoding° LyX inserts
\usepackage[T1]{fontenc}
\usepackage[latin9]{luainputenc}
which is completly nonsense if using lualatex. You'll get
unknown commands and no bibliography.


I don't use lualatex; only pdflatex. Somehow lyx inserted those two packages
because I had no reason to do so.

Regards,

Rich
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Re: Bibliography not shown in compiled PDF

[Herbert Voss]

Am 05.12.23 um 21:16 schrieb Rich Shepard:

On Tue, 5 Dec 2023, Herbert Voss wrote:


as I already  wrote:
- enable the "Use non TeX fonts"
- add \usepackage{avant}  in the document->setting->preamble
- add also  \usepackage[scaled]{beramono}
   or \usepackage{courier}   which is _not_ a nice monofont.





Rich

Okay. But I want to understand how the wrong package got into the 
preamble

when it was never there before now.


That is the user preamble! It _must_ be inserted by you.




And how is the font setting preventing the bibliography from not being
included in the report and its ToC?


It was a wrong font encoding° LyX inserts

\usepackage[T1]{fontenc}
\usepackage[latin9]{luainputenc}

which is completly nonsense if using lualatex. You'll get
unknown commands and no bibliography.

Herbert
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Re: Bibliography not shown in compiled PDF

[Rich Shepard]

On Tue, 5 Dec 2023, Herbert Voss wrote:


as I already  wrote:
- enable the "Use non TeX fonts"
- add \usepackage{avant}  in the document->setting->preamble
- add also  \usepackage[scaled]{beramono}
   or \usepackage{courier}   which is _not_ a nice monofont.


Herbert,

Okay. But I want to understand how the wrong package got into the preamble
when it was never there before now.

And how is the font setting preventing the bibliography from not being
included in the report and its ToC?

Regards,

Rich
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Re: Bibliography not shown in compiled PDF

[Herbert Voss]

Am 05.12.23 um 20:05 schrieb Rich Shepard:

On Tue, 5 Dec 2023, Rich Shepard wrote:


Attached is the font settings I've used for years,


Forgot to attach it.



Rich,
as I already  wrote:

- enable the "Use non TeX fonts"
- add \usepackage{avant}  in the document->setting->preamble
- add also  \usepackage[scaled]{beramono}
   or \usepackage{courier}   which is _not_ a nice monofont.



Taht's all

Herbert
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Re: Bibliography not shown in compiled PDF

[Rich Shepard]

On Tue, 5 Dec 2023, Steve Litt wrote:


Start by using grep on your LyX file. This might give you some ideas
about where it was specified.


SteveT,

It's in the default 'usepackage{}' group at the top of the file. But that
does not tell me how it got there nor how to remove it from all my docs
since it's not in the Document -> Settings -> Preamble.

Regards,

Rich
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Re: Bibliography not shown in compiled PDF

[Steve Litt]

Rich Shepard said on Tue, 5 Dec 2023 11:08:54 -0800 (PST)

>On Tue, 5 Dec 2023, Herbert Voss wrote:
>
>> that should be ok, but LyX used
>> \usepackage[latin9]{luainputenc}
>> which is for years deprecated. You can still use palatino with
>> \usepackage{mathpazo}
>> in the documents preamble and leave all entries in the fonts
>> settings for standard with enabled "no TeX fonts"  
>
>Herbert,
>
>I've no idea where that package was specified, not in the preamble
>that I can edit (attached) and not in any previous doc.
>
>How can I remove it from all documents?

Start by using grep on your LyX file. This might give you some ideas
about where it was specified.


SteveT

Steve Litt 

Autumn 2023 featured book: Rapid Learning for the 21st Century
http://www.troubleshooters.com/rl21
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Re: Bibliography not shown in compiled PDF

[Rich Shepard]

On Tue, 5 Dec 2023, Herbert Voss wrote:


that should be ok, but LyX used
\usepackage[latin9]{luainputenc}
which is for years deprecated. You can still use palatino with
\usepackage{mathpazo}
in the documents preamble and leave all entries in the fonts
settings for standard with enabled "no TeX fonts"


Herbert,

I've no idea where that package was specified, not in the preamble that I
can edit (attached) and not in any previous doc.

How can I remove it from all documents?

Thanks,

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Re: Bibliography not shown in compiled PDF

[Rich Shepard]

On Tue, 5 Dec 2023, Rich Shepard wrote:


Attached is the font settings I've used for years,


Forgot to attach it.

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Re: Bibliography not shown in compiled PDF

[Herbert Voss]

Am 05.12.23 um 18:59 schrieb Rich Shepard:


I don't understand. Attached is the font settings I've used for years,
including all recent docs in KOMA-Script Book and Report classes with
bibliographies, TeXLive2023, and LyX-2.3.6.1.

When I invoke "no TeX fonts" I cannot set the body type using 
Palatino, my

default since 1997.


Rich,
that should be ok, but LyX used

\usepackage[latin9]{luainputenc}

which is for years deprecated. You can still use palatino with
\usepackage{mathpazo}
in the documents preamble and leave all entries in the fonts
settings for standard with enabled "no TeX fonts"

Herbert
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Re: Bibliography not shown in compiled PDF

[Rich Shepard]

On Tue, 5 Dec 2023, Herbert Voss wrote:


you have the font setting for pdflatex. You should enable the button "no
TeX fonts" on top of document->setting->fonts. Otherwise you'll get the
latin9 encoding with luainputenc, which is rubbish ...

For the fonts use a serif font, eg Libertinus Serif, SF Libertinus Sans
and monofont Anonmyous Pro with a 90% scaling

With this modifications it runs successfully for me.


Herbert,

I don't understand. Attached is the font settings I've used for years,
including all recent docs in KOMA-Script Book and Report classes with
bibliographies, TeXLive2023, and LyX-2.3.6.1.

When I invoke "no TeX fonts" I cannot set the body type using Palatino, my
default since 1997.

Puzzled,

Rich
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Re: Bibliography not shown in compiled PDF

[Herbert Voss]

Am 05.12.23 um 17:12 schrieb Rich Shepard:

On Tue, 5 Dec 2023, Rich Shepard wrote:


Stay tuned ...




Attached are mwe.lyx and mwebib.bib (both with 2 references.) The mwe.lyx
compiles without error but there's no bibliography.



Rich,
you have the font setting for pdflatex. You should enable the button
"no TeX fonts" on top of document->setting->fonts. Otherwise you'll
get the latin9 encoding with luainputenc, which is rubbish ...

For the fonts use a serif font, eg Libertinus Serif, SF Libertinus Sans
and monofont Anonmyous Pro with a 90% scaling

With this modifications it runs successfully for me.

Herbert


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Re: Bibliography not shown in compiled PDF

[Rich Shepard]

On Tue, 5 Dec 2023, Pavel Sanda wrote:


Also, when I change the document class to e.g. book, the bibliography
works (probably switches to biblatex in backgrounds).


Pavel,

I changed mwe.lyx to KOMA-scrupt book class. Still no bibliography in the
document or ToC.

Running TeXLive2023 here.

Regards,

Rich
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Re: Bibliography not shown in compiled PDF

[Rich Shepard]

On Tue, 5 Dec 2023, Pavel Sanda wrote:


When I try to compile it I see errors complaining that I do not have 'biber'.
Do you have it installed?


Pavel,

Yes, biber is the processor used here. See attached.


Also, when I change the document class to e.g. book, the bibliography
works (probably switches to biblatex in backgrounds).


Well, biblatex is the default in all my report and book classes documents.

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Re: Bibliography not shown in compiled PDF

[Pavel Sanda]

On Tue, Dec 05, 2023 at 08:12:48AM -0800, Rich Shepard wrote:
> On Tue, 5 Dec 2023, Rich Shepard wrote:
> 
> >Stay tuned ...
> 
> Pavel, et al.:
> 
> Attached are mwe.lyx and mwebib.bib (both with 2 references.) The mwe.lyx
> compiles without error but there's no bibliography.

When I try to compile it I see errors complaining that I do not have 'biber'.
Do you have it installed?

Also, when I change the document class to e.g. book, the bibliography works
(probably switches to biblatex in backgrounds).

Pavel
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Bibliography not shown in compiled PDF

[Rich Shepard]

On Tue, 5 Dec 2023, Rich Shepard wrote:


Stay tuned ...


Pavel, et al.:

Attached are mwe.lyx and mwebib.bib (both with 2 references.) The mwe.lyx
compiles without error but there's no bibliography.

Regards,

Rich#LyX 2.3 created this file. For more info see http://www.lyx.org/
\lyxformat 544
\begin_document
\begin_header
\save_transient_properties true
\origin unavailable
\textclass scrreprt
\begin_preamble
\date{}
\usepackage{mathpazo,amssymb}
\usepackage{graphicx,relsize}
\usepackage{scrlayer-scrpage}
\pagestyle{scrheadings}
\usepackage{gensymb,textcomp}
\usepackage{lipsum}
\end_preamble
\use_default_options false
\maintain_unincluded_children false
\language english
\language_package default
\inputencoding auto
\fontencoding global
\font_roman "palatino" "default"
\font_sans "avant" "default"
\font_typewriter "courier" "default"
\font_math "auto" "auto"
\font_default_family rmdefault
\use_non_tex_fonts false
\font_sc true
\font_osf false
\font_sf_scale 100 100
\font_tt_scale 100 100
\use_microtype false
\use_dash_ligatures false
\graphics default
\default_output_format default
\output_sync 0
\bibtex_command biber mergedate=compact
\index_command default
\paperfontsize 11
\spacing single
\use_hyperref false
\papersize executivepaper
\use_geometry true
\use_package amsmath 1
\use_package amssymb 1
\use_package cancel 0
\use_package esint 0
\use_package mathdots 1
\use_package mathtools 0
\use_package mhchem 1
\use_package stackrel 0
\use_package stmaryrd 0
\use_package undertilde 0
\cite_engine biblatex-natbib
\cite_engine_type authoryear
\biblatex_bibstyle authoryear
\biblatex_citestyle authoryear
\use_bibtopic false
\use_indices false
\paperorientation portrait
\suppress_date false
\justification true
\use_refstyle 0
\use_minted 0
\index Index
\shortcut idx
\color #008000
\end_index
\paperwidth 6in
\paperheight 9in
\leftmargin 0.75in
\topmargin 0.5in
\rightmargin 0.5in
\bottommargin 0.5in
\secnumdepth 3
\tocdepth 3
\paragraph_separation indent
\paragraph_indentation default
\is_math_indent 0
\math_numbering_side default
\quotes_style english
\dynamic_quotes 0
\papercolumns 1
\papersides 2
\paperpagestyle default
\tracking_changes false
\output_changes false
\html_math_output 0
\html_css_as_file 0
\html_be_strict false
\end_header

\begin_body

\begin_layout Title
Title
\end_layout

\begin_layout Author
Author
\end_layout

\begin_layout Date
\begin_inset ERT
status open

\begin_layout Plain Layout


\backslash
today
\end_layout

\end_inset


\end_layout

\begin_layout Standard
\begin_inset CommandInset toc
LatexCommand tableofcontents

\end_inset


\end_layout

\begin_layout Standard
\begin_inset FloatList figure

\end_inset


\end_layout

\begin_layout Chapter
Introduction
\end_layout

\begin_layout Standard
\begin_inset ERT
status open

\begin_layout Plain Layout


\backslash
lipsum[1]
\end_layout

\end_inset


\end_layout

\begin_layout Chapter
Distribution
\end_layout

\begin_layout Standard
Some more text
\end_layout

\begin_layout Section
Idaho
\end_layout

\begin_layout Standard
\begin_inset ERT
status open

\begin_layout Plain Layout


\backslash
lipsum[2]
\end_layout

\end_inset


\begin_inset CommandInset citation
LatexCommand cite
key "Adams1997"
literal "true"

\end_inset


\end_layout

\begin_layout Section
Oregon
\end_layout

\begin_layout Standard
\begin_inset ERT
status open

\begin_layout Plain Layout


\backslash
lipsum[1]
\end_layout

\end_inset


\begin_inset CommandInset citation
LatexCommand citep
key "Czarnomski2001"
literal "true"

\end_inset


\end_layout

\begin_layout Standard
\begin_inset CommandInset bibtex
LatexCommand bibtex
btprint "btPrintCited"
bibfiles "mwebib"
options "bibtotoc"

\end_inset


\end_layout

\end_body
\end_document
% Encoding: UTF-8
@comment{x-kbibtex-encoding=utf-8}

@comment{ This file was created with JabRef 2.9.2.
}

@InProceedings{Adams1997,
  author= {Adams, S.B. and Bjornn, T.C.},
  booktitle = {{Friends of the Bull Trout Conference Proceedings}},
  title = {{Bull trout distributions related to temperature regimes in four 
central Idaho straams}},
  year  = {1997},
  editor= {Mackay, W.C. and Brewin, M.K. and Monita, M.},
  pages = {371--380},
  abstract  = {Bull trout, Salvelinus confluentus, distributions and water 
temperature regimes were studied in four streams of the Weiser River basin, 
Idaho, in 1992 and 1993. Bull trout occurred at elevations ranging from 1,472 m 
to 2,182 m and densities up to 9.5 fish per 100 m^2. Bull trout were  sympatric 
with rainbos trout, Orchorynchus mykiss, in all streams and with brook trout, 
S. fontinalis, and brook trout x bull trout hybrids in two streams.

Summer temperatures were continuously recorded in 1992 and 1993. The 1993 
temperature monitoring sites were at the upstream distrobutionlimits of 
juvenile bul

Bibliography not shown in compiled PDF

[Rich Shepard]

I've added the bibliography at the end of the document and specified it's to
be included in the ToC. It appears in neither place.

What might I be missing?

TIA,

Rich
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Re: numeric bibliography reference, biblatex, ieee

[Neal Becker]

Thanks.  1st I found that if I choose biblatex natbib mode then numeric
does work.  As you mentioned I also found I needed biblatex-ieee package
and select ieee option for bibliography.

Now it works, but as I found previously, the bibliography thus formatted
doesn't look like the ieee formatting produced by the old bibtex mode.  The
older one produces entries that are more visually compact.  Not sure if
using different font and/or size.

On Tue, Nov 21, 2023 at 3:52 PM Axel Dessecker  wrote:

> Am Montag, 20. November 2023, 17:41:03 CET schrieb Neal Becker:
> > I just started a new paper in ieee style and selected biblatex for
> > bibliography.  I know I will probably have to change that because last
> time
> > I used biblatex with ieee the resulting bibliography was too large -
> using
> > bibtex produced better results, but that's not my question.
> >
> > I need to get numeric references in the text (e.g., [1]), but that
> doesn't
> > seem to be a choice.  Even though in document/settings/bibliography I've
> > selected numeric, that's not an option for "citation style" when I click
> on
> > the citation.  I've attached 2 pics to illustrate.
> >
> > Any ideas?
>
> Neal,
>
> Have you thought about installing the biblatex-ieee package? This is also
> part
> of texlive.
>
> Axel
>
>
>
>
>
>

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Re: numeric bibliography reference, biblatex, ieee

[Axel Dessecker]

Am Montag, 20. November 2023, 17:41:03 CET schrieb Neal Becker:
> I just started a new paper in ieee style and selected biblatex for
> bibliography.  I know I will probably have to change that because last time
> I used biblatex with ieee the resulting bibliography was too large - using
> bibtex produced better results, but that's not my question.
> 
> I need to get numeric references in the text (e.g., [1]), but that doesn't
> seem to be a choice.  Even though in document/settings/bibliography I've
> selected numeric, that's not an option for "citation style" when I click on
> the citation.  I've attached 2 pics to illustrate.
> 
> Any ideas?

Neal,

Have you thought about installing the biblatex-ieee package? This is also part 
of texlive.

Axel





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Re: Adding bibliography to ToC

[Rich Shepard]

On Thu, 19 Oct 2023, Joel Kulesza wrote:


Do you have an MWE?


Joel,

No. I restored the unmodified copy from Tuesday's backup and added the
bibliography. Comparing the Settings -> Bibliography with a document having
no build issues I found that the new doc did not contain the biber processor
selected (it was the default) and it lacked the processor option of
mergedate=compact.

That fixed the problem and I completely forgot about posting the fix on the
mail list.

Regards,

Rich
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Re: Adding bibliography to ToC

[Joel Kulesza]

Rich,

Do you have an MWE?

Thanks,
Joel

On Thu, Oct 19, 2023 at 10:41 Rich Shepard  wrote:

> When I added the bibliography to the document I checked the box to have it
> added to the ToC. But it's not shown. What might I have missed?
>
> TIA,
>
> Rich
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>
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Adding bibliography to ToC

[Rich Shepard]

When I added the bibliography to the document I checked the box to have it
added to the ToC. But it's not shown. What might I have missed?

TIA,

Rich
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Re: Settings -> Bibliography: no access to biblatex

[Rich Shepard]

On Sat, 17 Jun 2023, Jürgen Spitzmüller wrote:


Do you have a module loaded or something in Local Layout?


Jürgen,

No, I don't. The issue has been resolved by my creating a new document
(KOMA-Script book class) and inserting the text file converted from the
problem file's PDF. Biblatex and biber are the defaults in the new document.

Thank you very much,

Rich
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Re: Settings -> Bibliography: no access to biblatex

[Jürgen Spitzmüller]

Am Dienstag, dem 13.06.2023 um 09:27 -0700 schrieb Rich Shepard:
> Installed are lyx-2.3.6.1-x86_64-1_SBo and TexLive2023.
> 
> Configuring a new book document using the memoir class the
> bibliography dialog box has made all biblatex choices unavailable
> (see attached screen shot.) Why? How do I fix this issue?

Do you have a module loaded or something in Local Layout?

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Settings -> Bibliography: no access to biblatex

[Rich Shepard]

Installed are lyx-2.3.6.1-x86_64-1_SBo and TexLive2023.

Configuring a new book document using the memoir class the bibliography
dialog box has made all biblatex choices unavailable (see attached screen
shot.) Why? How do I fix this issue?

TIA,

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Re: Bibliography issues

[Rich Shepard]

On Wed, 7 Jun 2023, Herbert Voss wrote:


Export your document to latex, then run pdflatex/bibtex/pdflatex on this
document and search for the deprecated commands in the .tex and .bbl file.
If they are in the .bbl file then your problem is an old bibtex stylefile
(.bst). If they are in the .tex file then your document itself or one of
the used packages must have these commands defined.


Herbert,

Thanks for the detailed explanation. I've got my work cut out for me as
pdflatex fails with an error:
! LaTeX Error: Command \chead already defined.
   Or name \end... illegal, see p.192 of the manual.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H   for immediate help.
 ...

l.1551 ...nel@ifstar {\@dblarg\@@@chead}{\@chead}}
  %
?

I'll look in my copy of 'The LaTeX Companion, 2nd Ed.' and see if I can find
that error.

Regards,

Rich
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Re: Bibliography issues

[Rich Shepard]

On Wed, 7 Jun 2023, Herbert Voss wrote:


you are using the for long time deprecated font commands like \sc. I
suppose that they are part of your created bbl file and therefore defined
in the style file of bibtex.


Herbert,

Yes, this document was started a long time ago.


enabledeprecatedfontcommands
you can allow KOMAScript to use these old commands. However, changing
it to the correct LaTeX commands would make sense: \sc  -> \scshape


Do I make those changes in the .lyx file? Newer documents use the current
font specifiers and allow me to set biblatex as the processor. I do not find
where to make these changes as they're not in the Document -> Settings ->
Bibliography dialog box or in Settings -> Preamble.

Where do I update older documents to match the newer ones?

Regards,

Rich
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Re: Bibliography issues

[Herbert Voss]

Am 07.06.23 um 18:45 schrieb Rich Shepard:

I'm using lyx-2.3.6.1 and the (older) document class is KOMA-Script Book.

A while ago I changed the bibliography generator from bibtex to biblatex,
but that's not an option for this document; only Default, biber, 
bibtex, and

bibtex8 are available from the Settings -> Bibliography dialog box. See
attached bibliography dialog box image.

When I try to compile the document (pdflatex) I find old-font-type errors
(see attached build error image.) Those should have been corected long 
ago.


Rich,

you are using the for long time deprecated font commands like \sc.
I suppose that they are part of your created bbl file and therefore defined
in the style file of bibtex.

Hower, withe documentclass option:

enabledeprecatedfontcommands

you can allow KOMAScript to use these old commands. However, changing
it to the correct LaTeX commands would make sense: \sc  -> \scshape

Herbert





Recent documents using the report classe haven't had these issues.

I need a pointer to find where I start looking for the reasons of these
issues.

TIA,

Rich



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Bibliography issues

[Rich Shepard]

I'm using lyx-2.3.6.1 and the (older) document class is KOMA-Script Book.

A while ago I changed the bibliography generator from bibtex to biblatex,
but that's not an option for this document; only Default, biber, bibtex, and
bibtex8 are available from the Settings -> Bibliography dialog box. See
attached bibliography dialog box image.

When I try to compile the document (pdflatex) I find old-font-type errors
(see attached build error image.) Those should have been corected long ago.

Recent documents using the report classe haven't had these issues.

I need a pointer to find where I start looking for the reasons of these
issues.

TIA,

Rich
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Re: two (or three) column bibliography

[Eckhard Höffner]

The German name of the modul is "Mehrere Spalten".

Maybe there is a misunderstanding. If you use multicol, you don't see 
several columns in LyX, but only in the pdf.



Am 27.04.23 um 16:52 schrieb Herbert Voss:

Wolfgang, I have a default LyX version, nothing special:
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Re: two (or three) column bibliography

[Herbert Voss]

Am 27.04.23 um 15:27 schrieb Wolfgang Engelmann:




To which submenu are you referring?
I could not find the 'Benutzerdefinierte Einfügungen for setting
'several columns'


You have to enable first the use of package multicol.


Sorry, I meant the _module_.




the package multicol was not shown here in my LyX. Apparently that 
package as a modul (which is missing here) does not work for a 2 
column bibliography and should therefore be removed.
But how do I make this below working for my LyX file? Or outside the 
file?


Wolfgang, I have a default LyX version, nothing special:

LyX Version 2.3.6.2


Herbert
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Re: two (or three) column bibliography

[Eckhard Höffner]

 multicol works fine for the purpose.

=> ls /usr/share/texlive/texmf-dist/tex/latex/tools/multi* shows 
different versions, but the default ist ok.


multicol is part of texlive-latex-base, so please install this package.


Am 27.04.23 um 06:51 schrieb Herbert Voss:



Am 26.04.23 um 18:03 schrieb Wolfgang Engelmann:
How do I get a two (or three) column bibliography in a Koma script 
book with A4 style (and no columns)?


Insert from the submenu the userdefined command Columns (Spalten)
and then insert the name of the bibliography as usual

Herbert



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Re: two (or three) column bibliography

[Wolfgang Engelmann]

Am 27.04.23 um 13:55 schrieb Herbert Voss:



Am 27.04.23 um 11:14 schrieb Wolfgang Engelmann:



Am 27.04.23 um 06:51 schrieb Herbert Voss:



Am 26.04.23 um 18:03 schrieb Wolfgang Engelmann:
How do I get a two (or three) column bibliography in a Koma script 
book with A4 style (and no columns)?


Insert from the submenu the userdefined command Columns (Spalten)
and then insert the name of the bibliography as usual

Herbert



Thanks, Herbert.

To which submenu are you referring?
I could not find the 'Benutzerdefinierte Einfügungen for setting
'several columns'


You have to enable first the use of package multicol.


the package multicol was not shown here in my LyX. Apparently that 
package as a modul (which is missing here) does not work for a 2 column 
bibliography and should therefore be removed.

But how do I make this below working for my LyX file? Or outside the file?

Wolfgang

 See screenshot.

The number of the columns is preset to 2 and can be changed in
file multicol.module which is part of the LyX installtion in the
subdirectory layouts/   Don't know if it can be done from within LyX.

Herbert

bash-3.2$ cat multicol.module
#\DeclareLyXModule[multicol.sty]{Multiple Columns}
#DescriptionBegin
#Adds a custom inset whose content is set with multiple columns (2 by 
default).

#See the Additional manual, section 'Multiple Text Columns', for a detailed
#description of multiple columns.
#DescriptionEnd
#Authors: Uwe Stöhr and Jürgen Spitzmüller

Format 66

InsetLayout Flex:Multiple_Columns
   LyXType            custom
   Decoration        classic
   LabelString        Columns
   LatexType            environment
   LatexName            multicols
   Requires            multicol
   Argument 1
     LabelString        "Number of Columns"
     Tooltip            "Insert the number of columns here"
     Mandatory        1
     DefaultArg        2
     PassThru        1
   EndArgument
   Argument 2
     LabelString        "Preface"
     Tooltip            "An optional preface"
   EndArgument
   Argument 3
     LabelString        "Space Before Page Break"
     Tooltip            "Free space that needs to be on the page to 
start the multiple columns on this page"

     Requires        2
   EndArgument
     ResetsFont true
End






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Re: two (or three) column bibliography

[Eckhard Höffner]

This is not a LyX problem.

LyX produces a tex-file that is stored (on my system) under 
/tmp/lyx_tempdir.random/ and than runs latex (pdflatex lualatex ...), 
makeindex, biber/biblatex on the tex file (several times, to get the 
idx, lot ... files).


You can open the tex file and search \printbibliography[options], insert 
\begin{multicols}{2} before and \end{multicols} after and than run 
pdflatex or xelatex (whatever you choose) on the file.


With Debian,

1. Install kile.

2. Run pdflatex /lualatex /xelatex from LyX (depending on the format 
chosen in the document settings) to produce a pdf


3.  open the tex file under /tmp/lyx_tempdir with kile

4. In kile, there is a drop down menue (next to "Wiederherstellen") -- 
choose pdflatex/lualatex/xelatex (whatever fits)


You get a new version of the pdf file in the same directory, can look at 
the log file and so on.



With my system it works without any problems, as you have seen (you may 
have to insert \cleardoublepage).




Am 27.04.23 um 11:11 schrieb Wolfgang Engelmann:

I use LyX
Version 2.4.0-beta2 (Sonntag, 11. Dezember 2022)
Qt-Version (Laufzeit): 5.15.2 (Plattform: xcb)
Qt-Version (bei Erstellung): 5.15.2
OS-Version (bei Erstellung): Debian GNU/Linux 11 (bullseye)
Python-Aufruf: python3 -tt

At the end of my book text I have

Subject index
Name Index
Nomenclature

\begin{multicols}{2}
Biblatex-erzeugtes Literaturverzeichnis
\end{multicols]

Not sure, whether this stuff before the Subject index might have an 
effect:

Weitere empfohlene Literatur
\begin{refsection}
here several citations
\printbibliography[heading=none]
\end{refsection} 
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Re: two (or three) column bibliography

[Wolfgang Engelmann]

Am 27.04.23 um 06:51 schrieb Herbert Voss:



Am 26.04.23 um 18:03 schrieb Wolfgang Engelmann:
How do I get a two (or three) column bibliography in a Koma script 
book with A4 style (and no columns)?


Insert from the submenu the userdefined command Columns (Spalten)
and then insert the name of the bibliography as usual

Herbert



Thanks, Herbert.

To which submenu are you referring?
I could not find the 'Benutzerdefinierte Einfügungen for setting
'several columns'

Wolfgang
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Re: two (or three) column bibliography

[Wolfgang Engelmann]

Am 27.04.23 um 09:26 schrieb Wolfgang Engelmann:


Thanks, Eckard, but I had already
> In the preamble;
>
> \usepackage{multicol}

putting
> \begin{multicols}{2}
>
in front of Biblatex produced Bibliography
> ( LITERATURE )
and
> \end{multicols]
behind it did not produce a two column Bibliography.
May be Herberts proposal works, but I have not yet found the submenu 
he is referring to.


Wolfgang






Am 27.04.23 um 10:29 schrieb Eckhard Höffner:
> Hello Wolfgang,
>
> that's strange as I tried it and it worked, see the attached pictures.
>
> Document class; KOMA Script Book
> 
[cleardoublepage=empty,headings=small,headinclude,numbers=noenddot,toc=bib]


I don't have this in my preamble >  Wolfgang
>
> Bibliography style: Biblatex "autoryear"
yes
>
> Processor should be biber, but in LyX it's standard.
yes
>
> Maybe you don't have the option within the article class?
I don't understand this. I use the Koma script book style >Wolfgang
>
>

I use LyX
Version 2.4.0-beta2 (Sonntag, 11. Dezember 2022)
Qt-Version (Laufzeit): 5.15.2 (Plattform: xcb)
Qt-Version (bei Erstellung): 5.15.2
OS-Version (bei Erstellung): Debian GNU/Linux 11 (bullseye)
Python-Aufruf: python3 -tt

At the end of my book text I have

Subject index
Name Index
Nomenclature

\begin{multicols}{2}
Biblatex-erzeugtes Literaturverzeichnis
\end{multicols]

Not sure, whether this stuff before the Subject index might have an effect:
Weitere empfohlene Literatur
\begin{refsection}
here several citations
\printbibliography[heading=none]
\end{refsection}

Wolfgang
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Re: two (or three) column bibliography

[Wolfgang Engelmann]

Am 26.04.23 um 18:03 schrieb Wolfgang Engelmann:
How do I get a two (or three) column bibliography in a Koma script 
book with A4 style (and no columns)?


Wolfgang




Am 26.04.23 um 20:22 schrieb Eckhard Höffner:

In the preamble;

\usepackage{multicol}


\begin{multicols}{2}

LITERATURE
\end{multicols]







Thanks, Eckard, but I had already
> In the preamble;
>
> \usepackage{multicol}

putting
> \begin{multicols}{2}
>
in front of Biblatex produced Bibliography
> ( LITERATURE )
and
> \end{multicols]
behind it did not produce a two column Bibliography.
May be Herberts proposal works, but I have not yet found the submenu he 
is referring to.


Wolfgang
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Re: two (or three) column bibliography

[Herbert Voss]

Am 26.04.23 um 18:03 schrieb Wolfgang Engelmann:
How do I get a two (or three) column bibliography in a Koma script 
book with A4 style (and no columns)?


Insert from the submenu the userdefined command Columns (Spalten)
and then insert the name of the bibliography as usual

Herbert

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two (or three) column bibliography

[Wolfgang Engelmann]

How do I get a two (or three) column bibliography in a Koma script book 
with A4 style (and no columns)?


Wolfgang
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Re: Bibliography filtering by type

[Oliver Margraf]

Am 21.10.22 um 08:42 schrieb Jürgen Spitzmüller:


If you only want a main heading "Bibliography" in the toc, simply add
it as a chapter heading above the insets. If you also want the
bibliography section heading in the toc, use heading=subbibintoc
instead of heading=subbibliography in the inset options


Thank you so much - that's it. Sometimes the easiest things are the 
hardest... Maybe I was using plain LaTeX too much in the past to 
anticipate that it can be also that easy (with that little code) ;-)


Oliver
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Re: Bibliography filtering by type

[Jürgen Spitzmüller]

Am Donnerstag, dem 20.10.2022 um 08:29 +0200 schrieb Oliver Margraf:
> I also tried that - however then I won't get a "Bibliography" entry
> in the toc and (logically) only the subheadings, so this would work 
> yet then I would need to know how to add the toc entry and the main
> heading "Bibliography".

If you only want a main heading "Bibliography" in the toc, simply add
it as a chapter heading above the insets. If you also want the
bibliography section heading in the toc, use heading=subbibintoc
instead of heading=subbibliography in the inset options

HTH,

-- 
Jürgen


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Re: Bibliography filtering by type

[Jürgen Spitzmüller]

Am Dienstag, dem 18.10.2022 um 21:04 +0200 schrieb Oliver Margraf:
> However with the change (bibliography just put in from the list
> menu), I have now the problem of getting one full, unseparated
> bibliography and I don't know how to get my "old" sorting. Because
> when I try to set the option of the printbibliography command in the
> option of the LyX-biblatex entry (obviously one entry corresponding
> to the former printbib-command), I get that section from my bib
> printed, however, I couldn't find out how to get the "main" section
> "Biblography" on top and into the toc - if I add a biblatex-bib on
> top, I get (of course) full bibliography before the "filtered"
> sections.

For the code you showed, you need to insert 5 Bib(la)TeX Bibliography
insets, and add the options you want for each \printbibliography to the
respective inset. This should work.

If it doesn't, please send a complete minimal example file of the
previous (working) way and your failing approach.

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Re: Bibliography filtering by type

[Oliver Margraf]

I don't think so - Umlauts are shown without any problems (using UTF-8 
encoding) - just having a complete bibliography plus the filtered ones...


Oliver

Am 19.10.22 um 14:06 schrieb Dr Eberhard Lisse:

Perhaps an Umlaut Issue?

el

On 18/10/2022 21:04, Oliver Margraf wrote:

Dear list,

I have used LyX for some time and came now across the change of the
handling of the bibliography in 2.3.6. I managed to understand the
changes concering inserting a biblography, changes towards the preamble
and the change of using the options, however I have the following problem:
When I insert my bibliograpy, I separate it by the type of entry (as a
subbibliography). In the old form (with the biblatex entry set into a
note), I had a LaTeX box with entries like these:

\printbibliography[nottype=online,nottype=inarticle,nottype=report,nottype=book,nottype=inbook,heading=subbibliography,title={Aufsätze
 in Journals und Tagungsbänden}]
\printbibliography[type=inbook,heading=subbibliography,title={Artikel
aus Sammelbänden}]
\printbibliography[type=book,heading=subbibliography,title={Bücher}]
\printbibliography[type=report,heading=subbibliography,title={Studien}]
\printbibliography[type=online,heading=subbibliography,title={Onlinequellen}]

However with the change (bibliography just put in from the list menu), I
have now the problem of getting one full, unseparated bibliography and I
don't know how to get my "old" sorting. Because when I try to set the
option of the printbibliography command in the option of the
LyX-biblatex entry (obviously one entry corresponding to the former
printbib-command), I get that section from my bib printed, however, I
couldn't find out how to get the "main" section "Biblography" on top and
into the toc - if I add a biblatex-bib on top, I get (of course) full
bibliography before the "filtered" sections.
If I try to work without the insert of the Bibliography from LyX and use
LaTeX Code like this:


\cleardoublepage
\phantomsection
\addcontentsline{toc}{chapter}{Literaturverzeichnis}
\printbibheading
\printbibliography[nottype=online,nottype=inarticle,nottype=report,nottype=book,nottype=inbook,heading=subbibliography,title={Aufsätze
 in Journals und Tagungsbänden}]
\printbibliography[type=inbook,heading=subbibliography,title={Artikel
aus Sammelbänden}]
\printbibliography[type=book,heading=subbibliography,title={Bücher}]
\printbibliography[type=report,heading=subbibliography,title={Studien}]
\printbibliography[type=online,heading=subbibliography,title={Onlinequellen}]


I get a problem with the appendix - LyX gives me an LaTeX error like this:

LaTeX Error: Something's wrong --perhaps a missing \item
  ...on}{\numberline {A}Anhang}{21}{appendix.A}
   %
Try typing    to proceed.
If that doesn't work, type  X   to quit.


So my question is: How do I get the Bibliography-section (also in the
toc), plus the bib splitted into the specified types?
I tried to search the archives, but couldn't find anything matching.

TIA
Oliver



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Re: Bibliography filtering by type

[Dr Eberhard Lisse]

Perhaps an Umlaut Issue?

el

On 18/10/2022 21:04, Oliver Margraf wrote:
> Dear list,
> 
> I have used LyX for some time and came now across the change of the
> handling of the bibliography in 2.3.6. I managed to understand the
> changes concering inserting a biblography, changes towards the preamble
> and the change of using the options, however I have the following problem:
> When I insert my bibliograpy, I separate it by the type of entry (as a
> subbibliography). In the old form (with the biblatex entry set into a
> note), I had a LaTeX box with entries like these:
> 
> \printbibliography[nottype=online,nottype=inarticle,nottype=report,nottype=book,nottype=inbook,heading=subbibliography,title={Aufsätze
>  in Journals und Tagungsbänden}]
> \printbibliography[type=inbook,heading=subbibliography,title={Artikel
> aus Sammelbänden}]
> \printbibliography[type=book,heading=subbibliography,title={Bücher}]
> \printbibliography[type=report,heading=subbibliography,title={Studien}]
> \printbibliography[type=online,heading=subbibliography,title={Onlinequellen}]
> 
> However with the change (bibliography just put in from the list menu), I
> have now the problem of getting one full, unseparated bibliography and I
> don't know how to get my "old" sorting. Because when I try to set the
> option of the printbibliography command in the option of the
> LyX-biblatex entry (obviously one entry corresponding to the former
> printbib-command), I get that section from my bib printed, however, I
> couldn't find out how to get the "main" section "Biblography" on top and
> into the toc - if I add a biblatex-bib on top, I get (of course) full
> bibliography before the "filtered" sections.
> If I try to work without the insert of the Bibliography from LyX and use
> LaTeX Code like this:
> 
> 
> \cleardoublepage
> \phantomsection
> \addcontentsline{toc}{chapter}{Literaturverzeichnis}
> \printbibheading
> \printbibliography[nottype=online,nottype=inarticle,nottype=report,nottype=book,nottype=inbook,heading=subbibliography,title={Aufsätze
>  in Journals und Tagungsbänden}]
> \printbibliography[type=inbook,heading=subbibliography,title={Artikel
> aus Sammelbänden}]
> \printbibliography[type=book,heading=subbibliography,title={Bücher}]
> \printbibliography[type=report,heading=subbibliography,title={Studien}]
> \printbibliography[type=online,heading=subbibliography,title={Onlinequellen}]
> 
> 
> I get a problem with the appendix - LyX gives me an LaTeX error like this:
> 
> LaTeX Error: Something's wrong --perhaps a missing \item
>  ...on}{\numberline {A}Anhang}{21}{appendix.A}
>   %
> Try typing    to proceed.
> If that doesn't work, type  X   to quit.
> 
> 
> So my question is: How do I get the Bibliography-section (also in the
> toc), plus the bib splitted into the specified types?
> I tried to search the archives, but couldn't find anything matching.
> 
> TIA
> Oliver

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Bibliography filtering by type

[Oliver Margraf]

Dear list,

I have used LyX for some time and came now across the change of the 
handling of the bibliography in 2.3.6. I managed to understand the 
changes concering inserting a biblography, changes towards the preamble 
and the change of using the options, however I have the following problem:
When I insert my bibliograpy, I separate it by the type of entry (as a 
subbibliography). In the old form (with the biblatex entry set into a 
note), I had a LaTeX box with entries like these:


\printbibliography[nottype=online,nottype=inarticle,nottype=report,nottype=book,nottype=inbook,heading=subbibliography,title={Aufsätze 
in Journals und Tagungsbänden}]
\printbibliography[type=inbook,heading=subbibliography,title={Artikel 
aus Sammelbänden}]

\printbibliography[type=book,heading=subbibliography,title={Bücher}]
\printbibliography[type=report,heading=subbibliography,title={Studien}]
\printbibliography[type=online,heading=subbibliography,title={Onlinequellen}]

However with the change (bibliography just put in from the list menu), I 
have now the problem of getting one full, unseparated bibliography and I 
don't know how to get my "old" sorting. Because when I try to set the 
option of the printbibliography command in the option of the 
LyX-biblatex entry (obviously one entry corresponding to the former 
printbib-command), I get that section from my bib printed, however, I 
couldn't find out how to get the "main" section "Biblography" on top and 
into the toc - if I add a biblatex-bib on top, I get (of course) full 
bibliography before the "filtered" sections.
If I try to work without the insert of the Bibliography from LyX and use 
LaTeX Code like this:



\cleardoublepage
\phantomsection
\addcontentsline{toc}{chapter}{Literaturverzeichnis}
\printbibheading
\printbibliography[nottype=online,nottype=inarticle,nottype=report,nottype=book,nottype=inbook,heading=subbibliography,title={Aufsätze 
in Journals und Tagungsbänden}]
\printbibliography[type=inbook,heading=subbibliography,title={Artikel 
aus Sammelbänden}]

\printbibliography[type=book,heading=subbibliography,title={Bücher}]
\printbibliography[type=report,heading=subbibliography,title={Studien}]
\printbibliography[type=online,heading=subbibliography,title={Onlinequellen}]


I get a problem with the appendix - LyX gives me an LaTeX error like this:

LaTeX Error: Something's wrong --perhaps a missing \item
 ...on}{\numberline {A}Anhang}{21}{appendix.A}
  %
Try typingto proceed.
If that doesn't work, type  X   to quit.


So my question is: How do I get the Bibliography-section (also in the 
toc), plus the bib splitted into the specified types?

I tried to search the archives, but couldn't find anything matching.

TIA
Oliver
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Re: biblatex: excluding shorthand entries from the main bibliography in LyX ?

[Mathias Girel]

Edit : I was wrong introducing things in the preamble
Inserting in Tex code, at the end of the doc, just before the "commented
off" biblatex box the following lines did the trick
---
\printshorthands
\defbibcheck{noshorthand}{\iffieldundef{shorthand}{}{\skipentry}}
\printbibliography[check=noshorthand]
---
I then have my list of shorthands, and the biblio minus the titles with
shorthands.
There might be some "cleaner" ways to do it, I'll appreciate any
suggestions!
Best regards
Mathias


On Sun, Aug 21, 2022 at 8:57 PM Mathias Girel 
wrote:

> Dear LyX users
> For a monograph, I have a long list of shorthands and wish to remove these
> references from the main bibliography.
>
> I have seen the following link, but it generates errors if I paste the
> beginning of the code in the preamble, and the rest in ERT at the end of
> the doc (including, but not limited to "! LaTeX Error: Missing
> \begin{document}.")
>
>
> https://tex.stackexchange.com/questions/44372/biblatex-excluding-shorthand-entries-from-the-main-bibliography
>
> Is there a simple way to remove the references with shorthands from the
> main biblio in LyX?
> If so, what would be your advice ?
> I’m on OS X BigSur, LyX 2.3.6.2, Texlive 2022. The class is Memoir, I'm
> using variants of verbose for Biblatex.
> The whole doc compiles very well with just the \printshorthands in ERT
> before the Biblatex box, but I wished to remove the duplicates.
>
> With many thanks!
> Mathias
>
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biblatex: excluding shorthand entries from the main bibliography in LyX ?

[Mathias Girel]

Dear LyX users
For a monograph, I have a long list of shorthands and wish to remove these
references from the main bibliography.

I have seen the following link, but it generates errors if I paste the
beginning of the code in the preamble, and the rest in ERT at the end of
the doc (including, but not limited to "! LaTeX Error: Missing
\begin{document}.")

https://tex.stackexchange.com/questions/44372/biblatex-excluding-shorthand-entries-from-the-main-bibliography

Is there a simple way to remove the references with shorthands from the
main biblio in LyX?
If so, what would be your advice ?
I’m on OS X BigSur, LyX 2.3.6.2, Texlive 2022. The class is Memoir, I'm
using variants of verbose for Biblatex.
The whole doc compiles very well with just the \printshorthands in ERT
before the Biblatex box, but I wished to remove the duplicates.

With many thanks!
Mathias
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Re: Bibliography Problem

[Joseph Hesse]

On 5/26/22 08:17, Jürgen Spitzmüller wrote:

Am Donnerstag, dem 26.05.2022 um 05:50 -0500 schrieb Joseph Hesse:

  Thank you for your reply.
  
  I duplicated what you had in the MWE.  My document settings are now

"Biblatex, Author-number, numeric, numeric".
  When I do a citation I only get 3 choices for the citation style,
"[#ID], Add to bibliography only, Key only".  In your MWE you had
more choices, including the one I am trying to get.
  I don't know what I am missing.

Can you sent me your document in PM?


  Thank you,
  Joe
After many hours, I solved my problem.  In my master document I had the 
style format Biblatex but I did not put this in the child document where 
I wanted to do the citation.  Changing, in the child document, Basic to 
Biblatex now gives me more choices in the citation style, including the 
one I want.


I hope this might help someone else.

Joe

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Re: Bibliography Problem

[Jürgen Spitzmüller]

Am Donnerstag, dem 26.05.2022 um 05:50 -0500 schrieb Joseph Hesse:
>  Thank you for your reply.
>  
>  I duplicated what you had in the MWE.  My document settings are now
> "Biblatex, Author-number, numeric, numeric".
>  When I do a citation I only get 3 choices for the citation style,
> "[#ID], Add to bibliography only, Key only".  In your MWE you had
> more choices, including the one I am trying to get.
>  I don't know what I am missing.

Can you sent me your document in PM?

>  Thank you,
>  Joe
-- 
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Re: Bibliography Problem

[Joseph Hesse]

On 5/25/22 05:30, Jürgen Spitzmüller wrote:
Am Mi., 25. Mai 2022 um 11:51 Uhr schrieb Joseph Hesse 
:


I want the citation to look something like "Smith [5]" where the
author's name appears in the citation.  I don't have a citation style
available  (Insert->Citation) that allows this, the best I can do is
just "[5]".  How can I get "Smith [5]"?

My latex preamble has \usepackage{biblatex}. 



Remove this, not needed (and this causes the clash you get).

In "Document->Settings->Bibliography" I have Style = Biblatex and
Variant =
Author-number. 



Also select a numeric citation style such as "numeric" (and the 
matching bibliography style).


See attached MWE.

HTH,
Jürgen

Joe

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Thank you for your reply.

I duplicated what you had in the MWE.  My document settings are now 
"Biblatex, Author-number, numeric, numeric".
When I do a citation I only get 3 choices for the citation style, 
"[#ID], Add to bibliography only, Key only".  In your MWE you had more 
choices, including the one I am trying to get.

I don't know what I am missing.
Thank you,
Joe
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Re: Bibliography Problem

[Jürgen Spitzmüller]

Am Mi., 25. Mai 2022 um 11:51 Uhr schrieb Joseph Hesse :

> I want the citation to look something like "Smith [5]" where the
> author's name appears in the citation.  I don't have a citation style
> available  (Insert->Citation) that allows this, the best I can do is
> just "[5]".  How can I get "Smith [5]"?
>
> My latex preamble has \usepackage{biblatex}.


Remove this, not needed (and this causes the clash you get).


> In "Document->Settings->Bibliography" I have Style = Biblatex and Variant
> =
> Author-number.


Also select a numeric citation style such as "numeric" (and the matching
bibliography style).

See attached MWE.

HTH,
Jürgen


> Joe
>
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>


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Bibliography Problem

[Joseph Hesse]

Hi,

I am writing a book with lyx and want a bibliography and the ability to 
cite items in the text.


My references.bib file is correct.  In my master document it appears at 
the end as "Biblatex Generated Bibliography" and in the pdf of the book 
the bibliography appears the way I want, as numbered items, e.g., [5] 
and sorted by author.


I want the citation to look something like "Smith [5]" where the 
author's name appears in the citation.  I don't have a citation style 
available  (Insert->Citation) that allows this, the best I can do is 
just "[5]".  How can I get "Smith [5]"?


My latex preamble has \usepackage{biblatex}.  In 
"Document->Settings->Bibliography" I have Style = Biblatex and Variant = 
Author-number.  When I choose [#id] from the 3 citation styles available 
I get an error when trying to produce a pdf.  The error message is 
"Latex Error: Option clash for package biblatex".


Any help would be appreciated.  Thank you for reading this.

Joe

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Re: What Am I Doing Wrong … bibliography entries not being included

[Paul A. Rubin]

On 4/19/22 08:29, Trevor Jenkins wrote:

Okay here’s the simplest case

Regards, Trevor.

<>< Re: deemed!


Mistakenly sent this to Trevor only, belatedly adding it to the thread 
on the list.


Go to Document > Settings... > Document Class and look at the custom 
class options field. It ends with ",nobib". If I delete that, the 
problem is fixed.


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Re: What Am I Doing Wrong … bibliography entries not being included

[Dr Eberhard W Lisse]

What is also not helpful is to have a hardcoded bibliography in a
directory that does not exist on my computer and starting the name of
the bibliography with a space ' '.

The (Tufte (not LyX)) issue is amenable to Google.

This link


https://tex.stackexchange.com/questions/587605/tufte-book-biblatex-error-biblatex-incompatible-with-natbib

basically says that nobib turns off natbib and if you don't have natbib
you need a replacement such as biblatex.

The correct LyX way of doing what you want is described in


https://lyx-users.lyx.narkive.com/V1WM48zp/correct-usage-of-nobibliography-in-lyx

which works in your example (after I loaded the required packages
manually, which I am now tossing again).

el

On 2022-04-19 14:48 , Dr Eberhard W Lisse wrote:
> No, it is not. It requires a number of packages which are not installed
> on my computer.
>
>
> el
>
> On 2022-04-19 14:29 , Trevor Jenkins wrote:
>> Okay here’s the simplest case
>>
>> Regards, Trevor.
>>
>> <>< Re: deemed!.
[...]

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Re: What Am I Doing Wrong … bibliography entries not being included

[Trevor Jenkins]

Okay here’s the simplest case

Regards, Trevor.

<>< Re: deemed!



LyX Test.lyx
Description: Binary data


Test for LyX Issue.bib
Description: Binary data

> On 18 Apr 2022, at 21:53, Dr Eberhard Lisse  wrote:
> 
> Create an MWE, please, ie a minimal working example, by reducing
> everything but what triggers the issue, and paste this here, including
> the BIB file which should contain a single reference.
> 
> Often that will lead you to the solution and if not we can have a look
> at it :-)-O
> 
> el
> 
> 
> 
> On 2022-04-18 10:39 , Trevor Jenkins wrote:
>> When I View my document ⌘-R pdflatex shouts that there are no
>> citations!  I have added the relevant BibTeX file using Insert >
>> List/TOC > Bib(la)Tex Bibliography picking a local .bib file and then
>> added a citation using Insert > Citation followed by Adding a specific
>> citation.  (It appears in a sidenote entry as I have tuftepaper as my
>> document class.)
>> Pdflatex’s error message is
>> BibTeX error: I found no \citation commands---while reading file Statins.aux
>> It makes no difference what Citation Style I select when adding the
>> citation.  I have had this working before (on a now dead machine) but
>> cannot for the life me work out what I am doing wrong.
>> Operating System: macOS 12.3.1 (Monterey)
>> Processor: M1
>> LyX version: 2.3.6.2
>> Python: 3.10.4 (freshly (re)installed)
>> Document class: tuftepaper
>>  with custom options:
>>  justified,a4paper,sidenote=raggedright,marginnote=raggedright,nobib
>>  that latter because I want to suppress the final bibliography
>>  listing and was fine in my previous not that it suppressed the
>>  bibliography
>> Regards, Trevor.
>> <>< Re: deemed!
> 
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Re: What Am I Doing Wrong … bibliography entries not being included

[Dr Eberhard Lisse]

Create an MWE, please, ie a minimal working example, by reducing
everything but what triggers the issue, and paste this here, including
the BIB file which should contain a single reference.

Often that will lead you to the solution and if not we can have a look
at it :-)-O

el



On 2022-04-18 10:39 , Trevor Jenkins wrote:

When I View my document ⌘-R pdflatex shouts that there are no
citations!  I have added the relevant BibTeX file using Insert >
List/TOC > Bib(la)Tex Bibliography picking a local .bib file and then
added a citation using Insert > Citation followed by Adding a specific
citation.  (It appears in a sidenote entry as I have tuftepaper as my
document class.)

Pdflatex’s error message is

BibTeX error: I found no \citation commands---while reading file Statins.aux

It makes no difference what Citation Style I select when adding the
citation.  I have had this working before (on a now dead machine) but
cannot for the life me work out what I am doing wrong.

Operating System: macOS 12.3.1 (Monterey)
Processor: M1
LyX version: 2.3.6.2
Python: 3.10.4 (freshly (re)installed)
Document class: tuftepaper
  with custom options:
  justified,a4paper,sidenote=raggedright,marginnote=raggedright,nobib
  that latter because I want to suppress the final bibliography
  listing and was fine in my previous not that it suppressed the
  bibliography


Regards, Trevor.

<>< Re: deemed!



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What Am I Doing Wrong … bibliography entries not being included

[Trevor Jenkins]

When I View my document ⌘-R pdflatex shouts that there are no citations! I have 
added the relevant BibTeX file using Insert > List/TOC > Bib(la)Tex 
Bibliography picking a local .bib file and then added a citation using Insert > 
Citation followed by Adding a specific citation. (It appears in a sidenote 
entry as I have tuftepaper as my document class.) 

Pdflatex’s error message is 

BibTeX error: I found no \citation commands---while reading file Statins.aux

It makes no difference what Citation Style I select when adding the citation. I 
have had this working before (on a now dead machine) but cannot for the life me 
work out what I am doing wrong.

Operating System: macOS 12.3.1 (Monterey)
Processor: M1
LyX version: 2.3.6.2
Python: 3.10.4 (freshly (re)installed)
Document class: tuftepaper
 with custom options: 
justified,a4paper,sidenote=raggedright,marginnote=raggedright,nobib
 that latter because I want to suppress the final bibliography listing and 
was fine in my previous not that it suppressed the bibliography


Regards, Trevor.

<>< Re: deemed!

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Re: Compiling child document with bibliography

[Jürgen Spitzmüller via lyx-users]

Am Montag, dem 14.02.2022 um 09:42 -0700 schrieb Hal Kierstead:
> It seems to be working now. Many thanks. Should I have been able to
> figure this out, or is it just magic?

Neither nor. Something seems to have gone wrong on your side with the
preferences, maybe during update, but this is difficult to trace back.

Jürgen



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Re: Compiling child document with bibliography

[Hal Kierstead via lyx-users]

> On Feb 14, 2022, at 8:58 AM, Jürgen Spitzmüller  wrote:
> 
> Am Montag, dem 14.02.2022 um 08:55 -0700 schrieb Hal Kierstead:
>> \default_view_format \converter
> 
> Remove this line.
> 
> Jürgen
> 

It seems to be working now. Many thanks. Should I have been able to figure this 
out, or is it just magic?

Hal
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Re: Fwd: Compiling child document with bibliography

[Jürgen Spitzmüller via lyx-users]

Am Montag, dem 14.02.2022 um 08:07 -0700 schrieb Hal Kierstead via lyx-
users:
> "error while exporting format: \converter”

What is the contents of your preferences file?

Jürgen



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Fwd: Compiling child document with bibliography

[Hal Kierstead via lyx-users]

> 
> 
>> I am sorry, but I do not understand this. First, I do:
>> 
>>>  Document > Settings > Child Document from the master, include
>>> only
>>> the desired child and click "Maintain counters and references”. 
>> 
>> And save it. But if I (immediately) check again the setting is back
>> to “Include all children”. 
> 
> The latter shouldn't be the case. How exactly did you try to change
> this setting?
> 
>> When I view the master document, I get the whole document correctly.
> 
> And you should get only the included children (and the master).
> 
>> Suppose I want to edit the included Chapter 2. I can right click on
>> it in the master, to open the LyX version of the included file, and
>> make changes. Now I would like to view those changes, with proper
>> references, citations, and numbering. “View master document” gives an
>> error.  “Buffer-view pdf” does not show the references, citations,
>> and numbering. 
> 
> What error does "View master document" give?
> 
> Jürgen

"error while exporting format: \converter”

Hal

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Re: Compiling child document with bibliography

[Jürgen Spitzmüller via lyx-users]

Am Montag, dem 14.02.2022 um 07:01 -0700 schrieb Hal Kierstead:
> I am sorry, but I do not understand this. First, I do:
> 
> >   Document > Settings > Child Document from the master, include
> > only
> > the desired child and click "Maintain counters and references”. 
> 
> And save it. But if I (immediately) check again the setting is back
> to “Include all children”. 

The latter shouldn't be the case. How exactly did you try to change
this setting?

> When I view the master document, I get the whole document correctly.

And you should get only the included children (and the master).

> Suppose I want to edit the included Chapter 2. I can right click on
> it in the master, to open the LyX version of the included file, and
> make changes. Now I would like to view those changes, with proper
> references, citations, and numbering. “View master document” gives an
> error.  “Buffer-view pdf” does not show the references, citations,
> and numbering. 

What error does "View master document" give?

Jürgen


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Re: Compiling child document with bibliography

[Hal Kierstead via lyx-users]

>> I have similar questions, but almost no experience with child
>> documents. Ideally I would like to be able to first compile the
>> entire document, and then edit and compile a child document,
>> separately from the rest of the master document, but still see
>> citations and reference numbers as they will appear when the entire
>> document is compiled. Can LyX manage this? If not would this be a
>> reasonable enhancement request?
> 
> Yes. Document > Settings > Child Document from the master, include only
> the desired child and click "Maintain counters and references". The
> master is printed as well, so it is advised to have a master that
> basically consists of inclusions of children only.
> 
> Jürgen

I am sorry, but I do not understand this. First, I do:

>  Document > Settings > Child Document from the master, include only
> the desired child and click "Maintain counters and references”. 

And save it. But if I (immediately) check again the setting is back to “Include 
all children”. When I view the master document, I get the whole document 
correctly.

Suppose I want to edit the included Chapter 2. I can right click on it in the 
master, to open the LyX version of the included file, and make changes. Now I 
would like to view those changes, with proper references, citations, and 
numbering. “View master document” gives an error.  “Buffer-view pdf” does not 
show the references, citations, and numbering. 

Am I hoping for too much or am I doing something wrong?

Hal
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Re: Compiling child document with bibliography

[Jürgen Spitzmüller via lyx-users]

Am Sonntag, dem 13.02.2022 um 15:18 -0700 schrieb Hal Kierstead via
lyx-users:
> 
> I have similar questions, but almost no experience with child
> documents. Ideally I would like to be able to first compile the
> entire document, and then edit and compile a child document,
> separately from the rest of the master document, but still see
> citations and reference numbers as they will appear when the entire
> document is compiled. Can LyX manage this? If not would this be a
> reasonable enhancement request?

Yes. Document > Settings > Child Document from the master, include only
the desired child and click "Maintain counters and references". The
master is printed as well, so it is advised to have a master that
basically consists of inclusions of children only.

Jürgen



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Re: Compiling child document with bibliography

[Jürgen Spitzmüller via lyx-users]

Am Sonntag, dem 13.02.2022 um 15:24 + schrieb tush via lyx-users:
> I am writing a book where each chapter is typed in a child document.
> The book contains citation from a bib file.
> 
> I am following the instructions here
> (https://wiki.lyx.org/FAQ/Multidoc#multipart-bib) and am pretty sure
> I created my branch correctly.
> 
> I created a master file, inserted the bib database into it, created a
> branch, created a child document, activated the branch in this child
> doc, and also deativated the branch in the master doc.
> 
> However, I now compile the first chapter and it seems that no
> information regarding the bib database is included in it. When I
> export this child document to a tex file, nothing related to biblatex
> is in the preamble.
> 
> How can I print the cited work when compiling only this chapter?

I think you misunderstood the advice. You should put the bibliography
inset into the branch, not the citation reference. Also, if the child
is supposed to be compiled standalone, it needs to have the proper
bibliography settings as well (biblatex in your case). See attached
example.

Note that an alternative approach is to use Document > Settings > Child
Documents (from the master) and to include only the desired child for
the output (this also prints the master's content, though).

HTH,
Jürgen



chapter01.lyx
Description: application/lyx


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Re: Compiling child document with bibliography

[Hal Kierstead via lyx-users]

On Feb 13, 2022, at 12:49 PM, Hal Kierstead  wrote:



> On Feb 13, 2022, at 8:24 AM, tush via lyx-users  > wrote:
> 
> I am writing a book where each chapter is typed in a child document. The book 
> contains citation from a bib file.
> 
> I am following the instructions here 
> (https://wiki.lyx.org/FAQ/Multidoc#multipart-bib 
> ) and am pretty sure I 
> created my branch correctly.
> 
> I created a master file, inserted the bib database into it, created a branch, 
> created a child document, activated the branch in this child doc, and also 
> deativated the branch in the master doc.
> 
> However, I now compile the first chapter and it seems that no information 
> regarding the bib database is included in it. When I export this child 
> document to a tex file, nothing related to biblatex is in the preamble.
> 
> How can I print the cited work when compiling only this chapter?
> 
> A MWE is attached as a zip file.
> -- 
> lyx-users mailing list
> lyx-users@lists.lyx.org 
> http://lists.lyx.org/mailman/listinfo/lyx-users


I have similar questions, but almost no experience with child documents. 
Ideally I would like to be able to first compile the entire document, and then 
edit and compile a child document, separately from the rest of the master 
document, but still see citations and reference numbers as they will appear 
when the entire document is compiled. Can LyX manage this? If not would this be 
a reasonable enhancement request?

Thanks, 

Hal

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Compiling child document with bibliography

[tush via lyx-users]

I am writing a book where each chapter is typed in a child document. The book 
contains citation from a bib file.

I am following the instructions here 
(https://wiki.lyx.org/FAQ/Multidoc#multipart-bib) and am pretty sure I created 
my branch correctly.

I created a master file, inserted the bib database into it, created a branch, 
created a child document, activated the branch in this child doc, and also 
deativated the branch in the master doc.

However, I now compile the first chapter and it seems that no information 
regarding the bib database is included in it. When I export this child document 
to a tex file, nothing related to biblatex is in the preamble.

How can I print the cited work when compiling only this chapter?

A MWE is attached as a zip file.<>
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Re: Bibliography not in ToC [RESOLVED]

[Steve Litt via lyx-users]

Rich Shepard via lyx-users said on Tue, 14 Dec 2021 13:23:05 -0800 (PST)


>Why it did not take when I changed the bibliography style I've no
>idea. But the reconfigure forced lyx to show me there were errors in
>the .bib file.

When troubleshooting, I always texhash;reconfigure; and then do
whatever. The extra 90 seconds is well worth it, because a misleading
diagnostic test can cost hours. By doing it this way, I never need to
tax my brain wondering whether a texhash and/or reconfigure is
necessary.

My troubleshooting is usually done from a looping shellscript.

SteveT

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Re: Bibliography not in ToC [RESOLVED]

[Rich Shepard via lyx-users]

On Tue, 14 Dec 2021, Herbert Voss via lyx-users wrote:


no, switching to biblatex (without natbib) and deleting the option below
was what I changed. Look into the status bar, what the biber runs reports.


Herbert,

That's what I had done, too. Yet, I ran 'Reconfigure' and when I tried to
compile the document lyx pointed me to three errors in my .bib file.
Somehow, the authoryear citation at the beginning of three entries
disappeared. I replaced them, recompiled, and the problem is fixed:
bibliography is present and shown in the ToC.

Why it did not take when I changed the bibliography style I've no idea. But
the reconfigure forced lyx to show me there were errors in the .bib file.

Thanks for the help.

Stay well,

Rich
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Re: Bibliography not in ToC

[Herbert Voss via lyx-users]

Am 14.12.21 um 22:11 schrieb Rich Shepard via lyx-users:

On Tue, 14 Dec 2021, Herbert Voss via lyx-users wrote:


not in my doc



Regardless, in your version of the .lyx file cite-engine is biblatex 
while
in mine it's biblatex-natbib, but I changed the bibliography style 
from the

latter to the former and saved the change.

Do I need to reconfigure LyX to get the change to take effect?


Rich,

no, switching to biblatex (without natbib) and deleting the option
below was what I changed. Look into the status bar, what the biber runs
reports.

Herbert
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Re: Bibliography not in ToC

[Rich Shepard via lyx-users]

On Tue, 14 Dec 2021, Herbert Voss via lyx-users wrote:


not in my doc


Herbert,

Regardless, in your version of the .lyx file cite-engine is biblatex while
in mine it's biblatex-natbib, but I changed the bibliography style from the
latter to the former and saved the change.

Do I need to reconfigure LyX to get the change to take effect?

Thanks,

Rich
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Re: Bibliography not in ToC

[Herbert Voss via lyx-users]

Am 14.12.21 um 21:30 schrieb Rich Shepard via lyx-users:

On Tue, 14 Dec 2021, Herbert Voss via lyx-users wrote:

then the biber run is missing. Try the following: you have a citation 
(the

last one) which is not in the bib file. Delete it and run the document
again. Does the TOC-entry appears?



I'm not following. There are four citations in the text, each in its own
chapter, and four entries in mwe.bib. The last citation is Shepard2016 
and

that's in the .bib file.


Rich,

not in my doc





What is the control window

The control window is under the text area. You have to enable it
with the menu view->...


Is that what I've known as the status bar?


Ah yes, you are right.

Attached your working example.

HErbert<>
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Re: Bibliography not in ToC

[Rich Shepard via lyx-users]

On Tue, 14 Dec 2021, Herbert Voss via lyx-users wrote:


then the biber run is missing. Try the following: you have a citation (the
last one) which is not in the bib file. Delete it and run the document
again. Does the TOC-entry appears?


Herbert:

I'm not following. There are four citations in the text, each in its own
chapter, and four entries in mwe.bib. The last citation is Shepard2016 and
that's in the .bib file.


What is the control window

The control window is under the text area. You have to enable it
with the menu view->...


Is that what I've known as the status bar?

Regards,

Rich
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Re: Bibliography not in ToC

[Herbert Voss via lyx-users]

Am 14.12.21 um 21:17 schrieb Rich Shepard via lyx-users:

On Tue, 14 Dec 2021, Herbert Voss via lyx-users wrote:


You have a wrong option in the document->settings->bibliography:
Delete the mergedate=compact. However, using the natbib mode
is something from the last millenium ... you should simply use
the authoryear style of biblatex.



Thanks. I don't know where the mergedate=compact came from.
I changed the style from biblatex(natbib mode) to biblatex.

It still does not output the bibliography nor place that entry in the 
ToC.


Rich,

then the biber run is missing. Try the following: you have a citation
(the last one)  which is not in the bib file. Delete it and run the document
again. Does the TOC-entry appears?





If you open the controll window in LyX then you see the errors
of the biber run, too!


What is the control window?


The control window is under the text area. You have to enable it
with the menu view->...





Btw:
- your format was defined as pdf (pdftex), but it should be  pdf 
(luatex)


In Settings -> Formats I have the output format set to PDF (pdflatex). 
I've

no idea what luatex does)


- do not use the line
   \usepackage{luainputenc},  it is superflous


There is no such line in the preamble:



Ah, maybe that it  was the LyX internal preamble. I'll have look
at tomorrow.

Herbert


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Re: Bibliography not in ToC

[Rich Shepard via lyx-users]

On Tue, 14 Dec 2021, Herbert Voss via lyx-users wrote:


You have a wrong option in the document->settings->bibliography:
Delete the mergedate=compact. However, using the natbib mode
is something from the last millenium ... you should simply use
the authoryear style of biblatex.


Herbert,

Thanks. I don't know where the mergedate=compact came from.
I changed the style from biblatex(natbib mode) to biblatex.

It still does not output the bibliography nor place that entry in the ToC.


If you open the controll window in LyX then you see the errors
of the biber run, too!


What is the control window?


Btw:
- your format was defined as pdf (pdftex), but it should be  pdf (luatex)


In Settings -> Formats I have the output format set to PDF (pdflatex). I've
no idea what luatex does)


- do not use the line
   \usepackage{luainputenc},  it is superflous


There is no such line in the preamble:
\date{}
\usepackage{mathpazo}
\usepackage{gensymb}
\usepackage{graphicx,relsize}
\usepackage{scrlayer-scrpage}
\pagestyle{scrheadings}
\usepackage{xurl}
\refoot{Applied Ecosystem Services, LLC}
\lofoot{Applied Ecosystem Services, LLC}
\automark*{section}

- do not use \usepackage[T1]{fontenc}, it is only for pdflatex and _not_ 
xelatex/lualatex


Ditto above. I have never used xeletax nor luatex.

Regards,

Rich
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Re: Bibliography not in ToC

[Herbert Voss via lyx-users]

Am 14.12.21 um 20:51 schrieb Herbert Voss via lyx-users:



Am 14.12.21 um 19:58 schrieb Rich Shepard via lyx-users:

Running LyX-2.3.6.1 on Slackware64-14.2.

The bibliography settings at the end of the paper indicate the 
bibliography
should be added to the end of the Table of Contents. It's not. Do I 
need to

explicitly add that command to the preamble?

I don't recall having this issue before and find no reference to it 
in my

saved threads of the mail list.

A MWE is attached: .lyx, .pdf, and .bib. I look forward to learning what
I've done incorrectly (or neglected to do at all.)


You have a wrong option in the document->settings->bibliography:



the image was missing ...



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Re: Bibliography not in ToC

[Herbert Voss via lyx-users]

Am 14.12.21 um 19:58 schrieb Rich Shepard via lyx-users:

Running LyX-2.3.6.1 on Slackware64-14.2.

The bibliography settings at the end of the paper indicate the 
bibliography
should be added to the end of the Table of Contents. It's not. Do I 
need to

explicitly add that command to the preamble?

I don't recall having this issue before and find no reference to it in my
saved threads of the mail list.

A MWE is attached: .lyx, .pdf, and .bib. I look forward to learning what
I've done incorrectly (or neglected to do at all.)


You have a wrong option in the document->settings->bibliography:





Delete the mergedate=compact. However, using the natbib mode
is something from the last millenium ... you should simply use
the authoryear style of biblatex.

If you open the controll window in LyX then you see the errors
of the biber run, too!

Btw:
- your format was defined as pdf (pdftex), but it should be  pdf (luatex)
- do not use the line
   \usepackage{luainputenc},  it is superflous
- do not use \usepackage[T1]{fontenc}, it is only for pdflatex and _not_ 
xelatex/lualatex



HErbert


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Bibliography not in ToC

[Rich Shepard via lyx-users]

Running LyX-2.3.6.1 on Slackware64-14.2.

The bibliography settings at the end of the paper indicate the bibliography
should be added to the end of the Table of Contents. It's not. Do I need to
explicitly add that command to the preamble?

I don't recall having this issue before and find no reference to it in my
saved threads of the mail list.

A MWE is attached: .lyx, .pdf, and .bib. I look forward to learning what
I've done incorrectly (or neglected to do at all.)

TIA,

Rich

mwe.tgz
Description: GNU Zip compressed data
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Re: Bibliography styles

[Dr Eberhard Lisse]

I can only find LOG and PNG files, not a LyX, never mind an MWE :-)-O

On 13/10/2021 17:06, Rich Shepard wrote:

On Wed, 13 Oct 2021, Dr Eberhard Lisse wrote:


Because it is in the "label" (\cite key?)  field whereas (I assume
without having seen a MWE) the others are elsewhere ("author" field
for example).


Yep.

And I sent a MWE with my first post but you thought it too long.

Rich


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Re: Bibliography styles

[Rich Shepard]

On Wed, 13 Oct 2021, Dr Eberhard Lisse wrote:


Because it is in the "label" (\cite key?)  field whereas (I assume without
having seen a MWE) the others are elsewhere ("author" field for example).


Yep.

And I sent a MWE with my first post but you thought it too long.

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Re: Bibliography styles

[Dr Eberhard Lisse]

Because it is in the "label" (\cite key?)  field whereas (I assume
without having seen a MWE) the others are elsewhere ("author" field for
example).

From

 https://bibdesk.sourceforge.io/manual/BibDeskHelp_2.html

 Citation Keys

 A cite key is a unique identifier for a given reference.  BibTeX
 scans your document for occurrences of a cite command with a cite
 key embedded in it, and translates it into a properly formatted
 reference.  Several patterns are common in choosing cite keys, from
 simple ones such as "lastnameYEAR" to more complicated abbreviations
 of journal names and author names.  BibDesk will automatically
 generate cite keys for you (See section Citation Keys), or you can
 enter your own in the editor.

-->
 BibDesk takes a fairly strict interpretation of the valid characters
 for cite keys, and the characters " "@',\#}{~%" (including the space
 character) are never allowed, while you will be warned if you use
 one of "&$^" in a cite key.
<--

 Cite keys are essentially TeX commands, so you should avoid
 using underscores, for instance, if you ever need to print the
 actual cite key itself.

el

On 13/10/2021 14:54, Rich Shepard wrote:

On Wed, 13 Oct 2021, Dr Eberhard Lisse wrote:


IT. IS. THE. APOSTROPHE!


1. Then why is it only this one entry and not any of the other 9?

2. Why has this not been an issue before now? Is it biblatex-related and not
seen by bibtex?

3. If you're correct then how does one enter an apostrophy in an author's
name so it's properly written in both citation and bibliography?

You keep pointing out the source of the problem so I assume you have the
solution to it. I'd greatly appreciate learning that solution.

Rich


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Re: Bibliography styles

[Rich Shepard]

On Wed, 13 Oct 2021, Dr Eberhard Lisse wrote:


IT. IS. THE. APOSTROPHE!


1. Then why is it only this one entry and not any of the other 9?

2. Why has this not been an issue before now? Is it biblatex-related and not
seen by bibtex?

3. If you're correct then how does one enter an apostrophy in an author's
name so it's properly written in both citation and bibliography?

You keep pointing out the source of the problem so I assume you have the
solution to it. I'd greatly appreciate learning that solution.

Rich
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Re: Bibliography styles

[Dr Eberhard Lisse]

IT. IS. THE. APOSTROPHE!


On 12/10/2021 17:10, Rich Shepard wrote:

On Tue, 12 Oct 2021, Dr Eberhard Lisse wrote:


Change the label/reference to OConnor2019 :-)-O
BibDesk does not allow me to even enter a "'"


el,

$ grep -c -e "O'" documents/jabrefdb.bib 10

There are 10 entries begining with "O'" and none has before been an
issue.

Rich


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Re: Bibliography styles

[Steve Litt]

Rich Shepard said on Tue, 12 Oct 2021 07:17:34 -0700 (PDT)

>On Tue, 12 Oct 2021, Rich Shepard wrote:
>
>> More importantly, that article is not cited in the document; the
>> only two citations from JabRef refer to salmon migration.  
>
>And I forgot to mention that there's no Bibliography in the PDF.

Did you remember to compile it twice?


SteveT

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Re: Bibliography styles

[Rich Shepard]

On Tue, 12 Oct 2021, Dr Eberhard Lisse wrote:


you can have whatever BST file is found by LaTeX, or rather whatever BST
file LyX finds when Tools --> Reconfigure... is run.


EL,

Before I escaped from academia and its politics all my published articles'
references were in author-year format. I've used that same format ever
since.

This bibliography issue is new since the pandemic; I've had no need to
prepare reports or other documents with references or bibliographies until
now.

Rich
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Re: Bibliography styles

[Rich Shepard]

On Tue, 12 Oct 2021, Dr Eberhard Lisse wrote:


Change the label/reference to OConnor2019 :-)-O
BibDesk does not allow me to even enter a "'"


el,

$ grep -c -e "O'" documents/jabrefdb.bib 
10


There are 10 entries begining with "O'" and none has before been an issue.

Rich
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