bioc-sig-sequencing  

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• 2010/02/11 Re: [Bioc-sig-seq] ShortRead sequences Wolfgang Huber
• 2010/02/11 [Bioc-sig-seq] ShortRead sequences Droit Arnaud
• 2010/02/11 Re: [Bioc-sig-seq] Annotation of ChIP-Seq peaks Julie Zhu
• 2010/02/10 Re: [Bioc-sig-seq] Annotation of ChIP-Seq peaks Seth Falcon
• 2010/02/10 Re: [Bioc-sig-seq] read sequences from the web Thomas Girke
• 2010/02/10 Re: [Bioc-sig-seq] extendReads in package chipseq - reads are extended below zero Michael Lawrence
• 2010/02/10 [Bioc-sig-seq] extendReads in package chipseq - reads are extended below zero Nora Rieber
• 2010/02/09 Re: [Bioc-sig-seq] read sequences from the web Hervé Pagès
• 2010/02/09 Re: [Bioc-sig-seq] Sorting RangedData Ivan Gregoretti
• 2010/02/09 Re: [Bioc-sig-seq] Sorting RangedData Michael Lawrence
• 2010/02/09 [Bioc-sig-seq] Sorting RangedData Ivan Gregoretti
• 2010/02/09 Re: [Bioc-sig-seq] Annotation of ChIP-Seq peaks Julie Zhu
• 2010/02/09 Re: [Bioc-sig-seq] Annotation of ChIP-Seq peaks Julie Zhu
• 2010/02/09 Re: [Bioc-sig-seq] Annotation of ChIP-Seq peaks Seth Falcon
• 2010/02/09 Re: [Bioc-sig-seq] Annotation of ChIP-Seq peaks Michael Lawrence
• 2010/02/09 Re: [Bioc-sig-seq] Annotation of ChIP-Seq peaks Julie Zhu
• 2010/02/09 Re: [Bioc-sig-seq] srFilter function in ShortRead Marcus Davy
• 2010/02/09 Re: [Bioc-sig-seq] Annotation of ChIP-Seq peaks Michael Lawrence
• 2010/02/09 Re: [Bioc-sig-seq] srFilter function in ShortRead Vincent Carey
• 2010/02/09 Re: [Bioc-sig-seq] skip the comment lines with read.BStringSet Hervé Pagès
• 2010/02/09 [Bioc-sig-seq] srFilter function in ShortRead joseph
• 2010/02/09 Re: [Bioc-sig-seq] Annotation of ChIP-Seq peaks Julie Zhu
• 2010/02/09 [Bioc-sig-seq] skip the comment lines with read.BStringSet burak kutlu
• 2010/02/09 Re: [Bioc-sig-seq] identifying a common motif in a set of sequences Muino, Jose
• 2010/02/09 Re: [Bioc-sig-seq] ChIPpeakAnno fails to interpret standard chromosome name and strandedness Julie Zhu
• 2010/02/09 Re: [Bioc-sig-seq] identifying a common motif in a set of sequences Michael Lawrence
• 2010/02/09 Re: [Bioc-sig-seq] identifying a common motif in a set of sequences Johannes Rainer
• 2010/02/09 [Bioc-sig-seq] identifying a common motif in a set of sequences Johannes Rainer
• 2010/02/08 [Bioc-sig-seq] ChIPpeakAnno fails to interpret standard chromosome name and strandedness Ivan Gregoretti
• 2010/02/08 Re: [Bioc-sig-seq] Annotation of ChIP-Seq peaks Michael Lawrence
• 2010/02/08 [Bioc-sig-seq] Annotation of ChIP-Seq peaks [email protected]
• 2010/02/08 Re: [Bioc-sig-seq] uniqueFilter in the ShortRead package - Integer overflow - bug fix Martin Morgan
• 2010/02/08 Re: [Bioc-sig-seq] read sequences from the web Seth Falcon
• 2010/02/08 Re: [Bioc-sig-seq] uniqueFilter in the ShortRead package - Integer overflow - bug fix Nora Rieber
• 2010/02/07 Re: [Bioc-sig-seq] Trimming Solexa/Illumina primers/adaptors; ShortRead Johannes Rainer
• 2010/02/07 Re: [Bioc-sig-seq] Rsamtools Martin Morgan
• 2010/02/07 Re: [Bioc-sig-seq] uniqueFilter in the ShortRead package Martin Morgan
• 2010/02/06 Re: [Bioc-sig-seq] strandedness bug in Rsamtools? Steve Lianoglou
• 2010/02/06 Re: [Bioc-sig-seq] strandedness bug in Rsamtools? Martin Morgan
• 2010/02/06 Re: [Bioc-sig-seq] strandedness bug in Rsamtools? Steve Lianoglou
• 2010/02/06 Re: [Bioc-sig-seq] strandedness bug in Rsamtools? Steve Lianoglou
• 2010/02/06 Re: [Bioc-sig-seq] strandedness bug in Rsamtools? Vincent Carey
• 2010/02/06 Re: [Bioc-sig-seq] strandedness bug in Rsamtools? Martin Morgan
• 2010/02/06 Re: [Bioc-sig-seq] strandedness bug in Rsamtools? Vincent Carey
• 2010/02/06 Re: [Bioc-sig-seq] strandedness bug in Rsamtools? Martin Morgan
• 2010/02/06 Re: [Bioc-sig-seq] strandedness bug in Rsamtools? Martin Morgan
• 2010/02/06 Re: [Bioc-sig-seq] strandedness bug in Rsamtools? Steve Lianoglou
• 2010/02/06 [Bioc-sig-seq] strandedness bug in Rsamtools? Steve Lianoglou
• 2010/02/05 [Bioc-sig-seq] uniqueFilter in the ShortRead package Jason Lu
• 2010/02/05 Re: [Bioc-sig-seq] read sequences from the web Michael Lawrence
• 2010/02/05 Re: [Bioc-sig-seq] read sequences from the web Laurent Gautier
• 2010/02/05 Re: [Bioc-sig-seq] read sequences from the web Thomas Girke
• 2010/02/05 Re: [Bioc-sig-seq] read sequences from the web Hervé Pagès
• 2010/02/05 Re: [Bioc-sig-seq] Trimming Solexa/Illumina primers/adaptors; ShortRead Martin Morgan
• 2010/02/05 Re: [Bioc-sig-seq] mixing 2 fastQ files Martin Morgan
• 2010/02/05 Re: [Bioc-sig-seq] mixing 2 fastQ files Ramzi TEMANNI
• 2010/02/05 [Bioc-sig-seq] mixing 2 fastQ files Ramzi TEMANNI
• 2010/02/04 [Bioc-sig-seq] Trimming Solexa/Illumina primers/adaptors; ShortRead Johannes Rainer
• 2010/02/01 Re: [Bioc-sig-seq] countOverlaps Help Michael Lawrence
• 2010/02/01 Re: [Bioc-sig-seq] countOverlaps Help Vincent Carey
• 2010/02/01 [Bioc-sig-seq] countOverlaps Help Dario Strbenac
• 2010/01/29 [Bioc-sig-seq] read sequences from the web Thomas Girke
• 2010/01/28 Re: [Bioc-sig-seq] Operations between sets of ChIP-seq peak locations Ivan Gregoretti
• 2010/01/28 Re: [Bioc-sig-seq] Rsamtools Dykema, Karl
• 2010/01/28 Re: [Bioc-sig-seq] Operations between sets of ChIP-seq peak locations Michael Lawrence
• 2010/01/28 Re: [Bioc-sig-seq] Operations between sets of ChIP-seq peak locations Steve Lianoglou
• 2010/01/28 [Bioc-sig-seq] Operations between sets of ChIP-seq peak locations Ivan Gregoretti
• 2010/01/28 Re: [Bioc-sig-seq] ABout how to trim out the adaptor of soleax short data! Harris A. Jaffee
• 2010/01/27 Re: [Bioc-sig-seq] smoothing techniques Patrick Aboyoun
• 2010/01/27 [Bioc-sig-seq] smoothing techniques Bogdan Tanasa
• 2010/01/27 Re: [Bioc-sig-seq] unique reads count Martin Morgan
• 2010/01/27 Re: [Bioc-sig-seq] ABout how to trim out the adaptor of soleax short data! joseph
• 2010/01/27 Re: [Bioc-sig-seq] ABout how to trim out the adaptor of soleax short data! Harris A. Jaffee
• 2010/01/27 Re: [Bioc-sig-seq] unique reads count joseph
• 2010/01/27 Re: [Bioc-sig-seq] unique reads count Martin Morgan
• 2010/01/27 Re: [Bioc-sig-seq] Rsamtools Martin Morgan
• 2010/01/27 Re: [Bioc-sig-seq] ABout how to trim out the adaptor of soleax short data! joseph
• 2010/01/27 Re: [Bioc-sig-seq] ABout how to trim out the adaptor of soleax short data! Harris A. Jaffee
• 2010/01/27 Re: [Bioc-sig-seq] ABout how to trim out the adaptor of soleax short data! Harris A. Jaffee
• 2010/01/27 Re: [Bioc-sig-seq] unique reads count joseph
• 2010/01/27 [Bioc-sig-seq] ABout how to trim out the adaptor of soleax short data! Hongtao Hu
• 2010/01/27 Re: [Bioc-sig-seq] trimLRPatterns vs vmatchPattern Marcus Davy
• 2010/01/27 Re: [Bioc-sig-seq] Rsamtools Steve Lianoglou
• 2010/01/27 Re: [Bioc-sig-seq] trimLRPatterns vs vmatchPattern Harris A. Jaffee
• 2010/01/27 Re: [Bioc-sig-seq] Rsamtools Dykema, Karl
• 2010/01/27 Re: [Bioc-sig-seq] trimLRPatterns vs vmatchPattern Marcus Davy
• 2010/01/27 Re: [Bioc-sig-seq] unique reads count Martin Morgan
• 2010/01/27 [Bioc-sig-seq] unique reads count joseph
• 2010/01/26 Re: [Bioc-sig-seq] Rsamtools Steve Lianoglou
• 2010/01/26 Re: [Bioc-sig-seq] Rsamtools Martin Morgan
• 2010/01/26 Re: [Bioc-sig-seq] trimLRPatterns vs vmatchPattern Harris A. Jaffee
• 2010/01/26 Re: [Bioc-sig-seq] Rsamtools Martin Morgan
• 2010/01/26 [Bioc-sig-seq] Rsamtools Aurelie Laugraud
• 2010/01/26 [Bioc-sig-seq] Shuffling genomic positions at random Ivan Gregoretti
• 2010/01/25 [Bioc-sig-seq] trimLRPatterns vs vmatchPattern Marcus Davy
• 2010/01/25 Re: [Bioc-sig-seq] Extract masked sequences Michael Lawrence
• 2010/01/25 Re: [Bioc-sig-seq] Extract masked sequences Droit Arnaud
• 2010/01/22 Re: [Bioc-sig-seq] EdgeR bug (stable (1.4.3) and devel (1.5.5)) : the genes "columns" does not get ordered as the "counts" in the topTags results. Gordon K Smyth
• 2010/01/21 Re: [Bioc-sig-seq] Calculating insert size for paired-end /mate pair samples Pratap, Abhishek
• 2010/01/21 [Bioc-sig-seq] EdgeR bug (stable (1.4.3) and devel (1.5.5)) : the genes "columns" does not get ordered as the "counts" in the topTags results. Nicolas Delhomme
• 2010/01/20 Re: [Bioc-sig-seq] Rsamtools: Select reads on a chromosome Martin Morgan
• 2010/01/20 Re: [Bioc-sig-seq] Rsamtools: Select reads on a chromosome Michael Lawrence
• 2010/01/20 Re: [Bioc-sig-seq] Rsamtools: Select reads on a chromosome Steve Lianoglou
• 2010/01/20 Re: [Bioc-sig-seq] Rsamtools: Select reads on a chromosome Steve Lianoglou
• 2010/01/20 Re: [Bioc-sig-seq] Calculating insert size for paired-end /mate pair samples Tyler Backman
• 2010/01/20 Re: [Bioc-sig-seq] Calculating insert size for paired-end /mate pair samples Tyler Backman
• 2010/01/20 [Bioc-sig-seq] Calculating insert size for paired-end /mate pair samples Pratap, Abhishek
• 2010/01/19 Re: [Bioc-sig-seq] Extract masked sequences Patrick Aboyoun
• 2010/01/15 [Bioc-sig-seq] Extract masked sequences Droit Arnaud
• 2010/01/08 Re: [Bioc-sig-seq] 'coverage' error message (2) Kasper Daniel Hansen
• 2010/01/08 [Bioc-sig-seq] 'coverage' error message (2) [email protected]
• 2010/01/08 [Bioc-sig-seq] 2 post-doc and one PhD positions at the Bioinformatics and Genomics Department of the Centro de Investigaciones Príncipe Felipe, Valencia, Spa in. Ana Conesa
• 2010/01/07 Re: [Bioc-sig-seq] Rsamtools: Select reads on a chromosome Steve Lianoglou
• 2010/01/06 Re: [Bioc-sig-seq] Rsamtools: Select reads on a chromosome Martin Morgan
• 2010/01/06 [Bioc-sig-seq] Rsamtools: Select reads on a chromosome Steve Lianoglou
• 2010/01/06 Re: [Bioc-sig-seq] ShortRead internal: too many 'snap' entries Ramzi TEMANNI
• 2010/01/06 Re: [Bioc-sig-seq] ShortRead internal: too many 'snap' entries Martin Morgan
• 2010/01/05 [Bioc-sig-seq] ShortRead internal: too many 'snap' entries Ramzi TEMANNI
• 2010/01/05 Re: [Bioc-sig-seq] Normalization tools in Genominator Kasper Daniel Hansen
• 2010/01/05 [Bioc-sig-seq] Normalization tools in Genominator Michael Muratet
• 2010/01/04 Re: [Bioc-sig-seq] 'coverage' error message Patrick Aboyoun
• 2010/01/04 Re: [Bioc-sig-seq] 'agregate' error message Patrick Aboyoun
• 2010/01/04 [Bioc-sig-seq] 'agregate' error message [email protected]
• 2010/01/04 [Bioc-sig-seq] 'agregate' error message [email protected]
• 2010/01/04 [Bioc-sig-seq] 'coverage' error message [email protected]
• 2010/01/04 [Bioc-sig-seq] 'agregate' error message [email protected]
• 2010/01/04 Re: [Bioc-sig-seq] Illumina vs. ABI Solid Wilhelm Brian
• 2009/12/23 [Bioc-sig-seq] idiogram Ivan Gregoretti
• 2009/12/23 Re: [Bioc-sig-seq] Illumina vs. ABI Solid Kasper Daniel Hansen
• 2009/12/23 Re: [Bioc-sig-seq] Genominator Kasper Daniel Hansen
• 2009/12/23 Re: [Bioc-sig-seq] Genominator Michael Muratet
• 2009/12/22 Re: [Bioc-sig-seq] Illumina vs. ABI Solid Sulev Kõks
• 2009/12/22 Re: [Bioc-sig-seq] Illumina vs. ABI Solid Steve Lianoglou
• 2009/12/22 [Bioc-sig-seq] Illumina vs. ABI Solid Droit Arnaud
• 2009/12/22 Re: [Bioc-sig-seq] Genominator Patrick Aboyoun
• 2009/12/22 Re: [Bioc-sig-seq] Genominator Seth Falcon
• 2009/12/22 [Bioc-sig-seq] Genominator Michael Muratet
• 2009/12/17 Re: [Bioc-sig-seq] ploting paired-end reads using GenomeGraphs Kasper Daniel Hansen
• 2009/12/17 Re: [Bioc-sig-seq] ploting paired-end reads using GenomeGraphs Ramzi TEMANNI
• 2009/12/17 Re: [Bioc-sig-seq] ploting paired-end reads using GenomeGraphs Kasper Daniel Hansen
• 2009/12/17 [Bioc-sig-seq] ploting paired-end reads using GenomeGraphs Ramzi TEMANNI
• 2009/12/09 Re: [Bioc-sig-seq] Querying Pubmed using search terms? Sean Davis
• 2009/12/09 [Bioc-sig-seq] Querying Pubmed using search terms? Purnachander
• 2009/12/08 Re: [Bioc-sig-seq] Probs installing dev version of Rsamtools Pratap, Abhishek
• 2009/12/08 Re: [Bioc-sig-seq] Probs installing dev version of Rsamtools Seth Falcon
• 2009/12/08 Re: [Bioc-sig-seq] Probs installing dev version of Rsamtools Martin Morgan
• 2009/12/08 [Bioc-sig-seq] Probs installing dev version of Rsamtools Pratap, Abhishek
• 2009/12/08 Re: [Bioc-sig-seq] readAligned and BAM format Pratap, Abhishek
• 2009/12/08 Re: [Bioc-sig-seq] readAligned and BAM format Sean Davis
• 2009/12/08 Re: [Bioc-sig-seq] readAligned and BAM format Sean Davis
• 2009/12/08 Re: [Bioc-sig-seq] readAligned and BAM format Pratap, Abhishek
• 2009/12/08 Re: [Bioc-sig-seq] readAligned and BAM format Pratap, Abhishek
• 2009/12/08 Re: [Bioc-sig-seq] readAligned and BAM format Martin Morgan
• 2009/12/08 Re: [Bioc-sig-seq] readAligned and BAM format Pratap, Abhishek
• 2009/12/08 Re: [Bioc-sig-seq] readAligned and BAM format Sean Davis
• 2009/12/08 Re: [Bioc-sig-seq] readAligned and BAM format Pratap, Abhishek
• 2009/12/08 Re: [Bioc-sig-seq] unexpected genes names list using getBM{biomaRt} Mohamed-Ramzi TEMANNI
• 2009/12/08 Re: [Bioc-sig-seq] unexpected genes names list using getBM{biomaRt} Ramzi TEMANNI
• 2009/12/08 Re: [Bioc-sig-seq] unexpected genes names list using getBM{biomaRt} James W. MacDonald
• 2009/12/08 Re: [Bioc-sig-seq] finding consensus sites in a set of DNA sequences Wolfgang Huber
• 2009/12/08 Re: [Bioc-sig-seq] finding consensus sites in a set of DNA sequences Wolfgang Huber
• 2009/12/07 [Bioc-sig-seq] finding consensus sites in a set of DNA sequences Arici Pogonici
• 2009/12/07 Re: [Bioc-sig-seq] Plotting Coverage for inhouse genome Pratap, Abhishek
• 2009/12/07 Re: [Bioc-sig-seq] unexpected genes names list using getBM{biomaRt} James W. MacDonald
• 2009/12/07 Re: [Bioc-sig-seq] unexpected genes names list using getBM{biomaRt} Ramzi TEMANNI
• 2009/12/07 Re: [Bioc-sig-seq] unexpected genes names list using getBM{biomaRt} Sean Davis
• 2009/12/07 [Bioc-sig-seq] unexpected genes names list using getBM{biomaRt} Ramzi TEMANNI
• 2009/12/06 Re: [Bioc-sig-seq] Plotting Coverage for inhouse genome Martin Morgan
• 2009/12/03 Re: [Bioc-sig-seq] Error while installing Rolexa Vincent Carey
• 2009/12/03 [Bioc-sig-seq] Error while installing Rolexa Purnachander
• 2009/12/03 Re: [Bioc-sig-seq] Plotting Coverage for inhouse genome Harris A. Jaffee
• 2009/12/02 Re: [Bioc-sig-seq] Plotting Coverage for inhouse genome Kasper Daniel Hansen
• 2009/12/02 Re: [Bioc-sig-seq] Plotting Coverage for inhouse genome Pratap, Abhishek
• 2009/12/02 Re: [Bioc-sig-seq] Plotting Coverage for inhouse genome Pratap, Abhishek
• 2009/12/02 Re: [Bioc-sig-seq] Plotting Coverage for inhouse genome Pratap, Abhishek
• 2009/12/02 Re: [Bioc-sig-seq] Plotting Coverage for inhouse genome Patrick Aboyoun
• 2009/12/02 Re: [Bioc-sig-seq] Plotting Coverage for inhouse genome Michael Lawrence
• 2009/12/02 [Bioc-sig-seq] Plotting Coverage for inhouse genome Pratap, Abhishek
• 2009/12/01 Re: [Bioc-sig-seq] NA vector for alignQuality with Bowtie output Steve Lianoglou
• 2009/12/01 Re: [Bioc-sig-seq] NA vector for alignQuality with Bowtie output Ramzi TEMANNI
• 2009/12/01 Re: [Bioc-sig-seq] NA vector for alignQuality with Bowtie output Martin Morgan
• 2009/12/01 [Bioc-sig-seq] NA vector for alignQuality with Bowtie output Ramzi TEMANNI
• 2009/11/30 Re: [Bioc-sig-seq] extract id from ShortRead Sean Davis
• 2009/11/30 [Bioc-sig-seq] extract id from ShortRead Ramzi TEMANNI
• 2009/11/26 Re: [Bioc-sig-seq] Confused on fastq to numeric conversion (SolexaPipeline 1.3+) Leonardo Collado Torres
• 2009/11/26 Re: [Bioc-sig-seq] Confused on fastq to numeric conversion (SolexaPipeline 1.3+) Martin Morgan
• 2009/11/26 [Bioc-sig-seq] Confused on fastq to numeric conversion (SolexaPipeline 1.3+) Leonardo Collado Torres
• 2009/11/25 [Bioc-sig-seq] Job add: Postdoctoral Bioinformatician , Statistical Geneticist Paul Leo
• 2009/11/25 Re: [Bioc-sig-seq] behavior of XStringSet after c() step Thomas Girke
• 2009/11/24 Re: [Bioc-sig-seq] behavior of XStringSet after c() step Hervé Pagès
• 2009/11/23 Re: [Bioc-sig-seq] behavior of XStringSet after c() step Thomas Girke
• 2009/11/23 Re: [Bioc-sig-seq] behavior of XStringSet after c() step Hervé Pagès
• 2009/11/22 Re: [Bioc-sig-seq] rtracklayer and all_mrna track Michael Lawrence
• 2009/11/21 [Bioc-sig-seq] behavior of XStringSet after c() step Thomas Girke
• 2009/11/20 [Bioc-sig-seq] rtracklayer and all_mrna track Dario Strbenac
• 2009/11/13 Re: [Bioc-sig-seq] Rolexa run-time error in batch mode Michael Muratet
• 2009/11/12 Re: [Bioc-sig-seq] Rolexa run-time error in batch mode Seth Falcon
• 2009/11/12 [Bioc-sig-seq] Rolexa run-time error in batch mode Michael Muratet
• 2009/11/12 Re: [Bioc-sig-seq] Creating IRangesList from a list of IRanges David Rossell
• 2009/11/10 Re: [Bioc-sig-seq] Creating IRangesList from a list of IRanges Steve Lianoglou

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