bioc-sig-sequencing  

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• 2010/04/01 Re: [Bioc-sig-seq] GenomicFeatures, error in type conversion RangeData to GRanges Michael Lawrence
• 2010/04/01 Re: [Bioc-sig-seq] GenomicFeatures, error in type conversion RangeData to GRanges Michael Lawrence
• 2010/04/01 Re: [Bioc-sig-seq] GenomicFeatures, error in type conversion RangeData to GRanges Martin Morgan
• 2010/04/01 Re: [Bioc-sig-seq] ExpressionSet alikes for next-gen data Martin Morgan
• 2010/04/01 Re: [Bioc-sig-seq] GenomicFeatures, error in type conversion RangeData to GRanges Michael Lawrence
• 2010/04/01 Re: [Bioc-sig-seq] GenomicFeatures, error in type conversion RangeData to GRanges Martin Morgan
• 2010/03/31 [Bioc-sig-seq] GenomicFeatures, error in type conversion RangeData to GRanges [email protected]
• 2010/03/31 Re: [Bioc-sig-seq] ExpressionSet alikes for next-gen data David Rossell
• 2010/03/31 Re: [Bioc-sig-seq] ExpressionSet alikes for next-gen data Michael Lawrence
• 2010/03/31 Re: [Bioc-sig-seq] ExpressionSet alikes for next-gen data David Rossell
• 2010/03/31 Re: [Bioc-sig-seq] ExpressionSet alikes for next-gen data Michael Lawrence
• 2010/03/31 [Bioc-sig-seq] ExpressionSet alikes for next-gen data David Rossell
• 2010/03/30 Re: [Bioc-sig-seq] ChIP-seq analysis in normalization/peak calling between sample and control Muino, Jose
• 2010/03/29 Re: [Bioc-sig-seq] ChIP-seq analysis in normalization/peak calling between sample and control Raphael Gottardo
• 2010/03/29 Re: [Bioc-sig-seq] ChIP-seq analysis in normalization/peak calling between sample and control Chen-Yi Chen
• 2010/03/27 Re: [Bioc-sig-seq] ChIP-seq analysis in normalization/peak calling between sample and control Muino, Jose
• 2010/03/26 [Bioc-sig-seq] ChIP-seq analysis in normalization/peak calling between sample and control Chen-Yi Chen
• 2010/03/26 Re: [Bioc-sig-seq] On re-installing R/Bioconductor. Ivan Gregoretti
• 2010/03/26 Re: [Bioc-sig-seq] On re-installing R/Bioconductor. Michael Lawrence
• 2010/03/26 Re: [Bioc-sig-seq] On re-installing R/Bioconductor. Patrick Aboyoun
• 2010/03/26 [Bioc-sig-seq] On re-installing R/Bioconductor. Ivan Gregoretti
• 2010/03/25 Re: [Bioc-sig-seq] ChIPpeakAnno get sequences from ranged data Zhu, Julie
• 2010/03/25 Re: [Bioc-sig-seq] ChIPpeakAnno get sequences from ranged data Eric Bremer
• 2010/03/24 Re: [Bioc-sig-seq] ChIPpeakAnno get sequences from ranged data Zhu, Julie
• 2010/03/23 Re: [Bioc-sig-seq] Questions about coverage visualization in wig file output Michael Lawrence
• 2010/03/23 Re: [Bioc-sig-seq] Fastq File size limit in the Short Read Package Martin Morgan
• 2010/03/23 [Bioc-sig-seq] Fastq File size limit in the Short Read Package Sirisha Sunkara
• 2010/03/23 Re: [Bioc-sig-seq] Questions about coverage visualization in wig file output Michael Lawrence
• 2010/03/23 [Bioc-sig-seq] Questions about coverage visualization in wig file output Chen-Yi Chen
• 2010/03/23 [Bioc-sig-seq] Questions about coverage visualization in wig file output Chen-Yi (Charlie) Chen
• 2010/03/23 Re: [Bioc-sig-seq] locally aligned reads Hervé Pagès
• 2010/03/23 [Bioc-sig-seq] org.Sc.sgd.db: ensembl id or entrez ID to GO term mapping Zhu, Julie
• 2010/03/23 [Bioc-sig-seq] org.Sc.sgd.db: Yeast ensembl ID to entrez ID conversion problem Zhu, Julie
• 2010/03/22 Re: [Bioc-sig-seq] GenomicFeatures, biomart support Hervé Pagès
• 2010/03/21 Re: [Bioc-sig-seq] Optimizing the generation of reads w/Biostrings. James Bullard
• 2010/03/21 Re: [Bioc-sig-seq] ChIPpeakAnno get sequences from ranged data Zhu, Julie
• 2010/03/20 Re: [Bioc-sig-seq] Optimizing the generation of reads w/Biostrings. Hervé Pagès
• 2010/03/20 Re: [Bioc-sig-seq] Optimizing the generation of reads w/Biostrings. Hervé Pagès
• 2010/03/19 Re: [Bioc-sig-seq] .gff from AlignedRead Michael Lawrence
• 2010/03/19 Re: [Bioc-sig-seq] .gff from AlignedRead Martin Morgan
• 2010/03/19 [Bioc-sig-seq] .gff from AlignedRead joseph
• 2010/03/19 [Bioc-sig-seq] GenomicFeatures, biomart support [email protected]
• 2010/03/18 Re: [Bioc-sig-seq] ChIPpeakAnno, BioMart, getAnnotation 'Exon' error message Zhu, Julie
• 2010/03/17 Re: [Bioc-sig-seq] ChIPpeakAnno, BioMart, getAnnotation 'Exon' error message Zhu, Julie
• 2010/03/17 Re: [Bioc-sig-seq] Favor: ChIPpeakAnno Zhu, Julie
• 2010/03/17 Re: [Bioc-sig-seq] ChIPpeakAnno, BioMart, getAnnotation 'Exon' error message Steffen Durinck
• 2010/03/17 [Bioc-sig-seq] Vector of RangedData Zhu, Julie
• 2010/03/17 Re: [Bioc-sig-seq] Vector of RangedData Michael Lawrence
• 2010/03/17 Re: [Bioc-sig-seq] Rsamtools installation Hervé Pagès
• 2010/03/17 Re: [Bioc-sig-seq] Vector of RangedData Zhu, Julie
• 2010/03/17 Re: [Bioc-sig-seq] Vector of RangedData Michael Lawrence
• 2010/03/17 Re: [Bioc-sig-seq] ChIPpeakAnno, BioMart, getAnnotation 'Exon' error message Zhu, Julie
• 2010/03/17 Re: [Bioc-sig-seq] ChIPpeakAnno, BioMart, getAnnotation 'Exon' error message Wolfgang Huber
• 2010/03/17 Re: [Bioc-sig-seq] GenomicFeatures, error message Hervé Pagès
• 2010/03/16 Re: [Bioc-sig-seq] genomicFeatures, rangedData vs GRanges objects Hervé Pagès
• 2010/03/16 Re: [Bioc-sig-seq] mapping coordinates Michael Lawrence
• 2010/03/16 Re: [Bioc-sig-seq] mapping coordinates Jason Lu
• 2010/03/16 Re: [Bioc-sig-seq] Overlap of multiple RangedData instances. Zhu, Julie
• 2010/03/16 Re: [Bioc-sig-seq] mapping coordinates Patrick Aboyoun
• 2010/03/16 Re: [Bioc-sig-seq] ChIPpeakAnno, BioMart, getAnnotation 'Exon' error message Zhu, Julie
• 2010/03/16 Re: [Bioc-sig-seq] Overlap of multiple RangedData instances. Ivan Gregoretti
• 2010/03/16 Re: [Bioc-sig-seq] Overlap of multiple RangedData instances. Michael Lawrence
• 2010/03/16 [Bioc-sig-seq] GenomicFeatures, error message [email protected]
• 2010/03/16 [Bioc-sig-seq] ChIPpeakAnno, BioMart, getAnnotation 'Exon' error message [email protected]
• 2010/03/16 [Bioc-sig-seq] genomicFeatures, rangedData vs GRanges objects [email protected]
• 2010/03/16 Re: [Bioc-sig-seq] Overlap of multiple RangedData instances. Ivan Gregoretti
• 2010/03/16 Re: [Bioc-sig-seq] mapping coordinates Michael Lawrence
• 2010/03/16 Re: [Bioc-sig-seq] RangedData: sorting problem Zhu, Julie
• 2010/03/16 Re: [Bioc-sig-seq] RangedData: sorting problem Zhu, Julie
• 2010/03/16 Re: [Bioc-sig-seq] mapping coordinates Patrick Aboyoun
• 2010/03/16 Re: [Bioc-sig-seq] RangedData: sorting problem Michael Lawrence
• 2010/03/16 Re: [Bioc-sig-seq] RangedData: sorting problem Vincent Carey
• 2010/03/16 Re: [Bioc-sig-seq] Overlap of multiple RangedData instances. Michael Lawrence
• 2010/03/16 Re: [Bioc-sig-seq] mapping coordinates Michael Lawrence
• 2010/03/16 Re: [Bioc-sig-seq] Rsamtools Vincent Carey
• 2010/03/16 [Bioc-sig-seq] Overlap of multiple RangedData instances. Ivan Gregoretti
• 2010/03/16 [Bioc-sig-seq] RangedData: sorting problem Zhu, Julie
• 2010/03/16 Re: [Bioc-sig-seq] mapping coordinates Patrick Aboyoun
• 2010/03/16 [Bioc-sig-seq] Optimizing the generation of reads w/Biostrings. bullard
• 2010/03/16 Re: [Bioc-sig-seq] ChIPpeakAnno annotatePeakInBatch function Zhu, Julie
• 2010/03/16 [Bioc-sig-seq] mapping coordinates Jason Lu
• 2010/03/12 Re: [Bioc-sig-seq] Of Mice and Lattice: twenty chromosomes and 7 automatic colours. Martin Morgan
• 2010/03/12 [Bioc-sig-seq] Of Mice and Lattice: twenty chromosomes and 7 automatic colours. Ivan Gregoretti
• 2010/03/10 Re: [Bioc-sig-seq] BSGenome: Intermittent failure in getSeq, matchPattern and findOverlaps Seth Falcon
• 2010/03/09 Re: [Bioc-sig-seq] ChIPpeakAnno annotatePeakInBatch function Zhu, Julie
• 2010/03/09 Re: [Bioc-sig-seq] novoalign format support Wu, Xiwei
• 2010/03/09 Re: [Bioc-sig-seq] novoalign format support Martin Morgan
• 2010/03/09 Re: [Bioc-sig-seq] ChIPpeakAnno annotatePeakInBatch function Zhu, Julie
• 2010/03/09 Re: [Bioc-sig-seq] ChIPpeakAnno annotatePeakInBatch function Ivan Gregoretti
• 2010/03/09 Re: [Bioc-sig-seq] ChIPpeakAnno annotatePeakInBatch function Ivan Gregoretti
• 2010/03/09 Re: [Bioc-sig-seq] ChIPpeakAnno annotatePeakInBatch function Zhu, Julie
• 2010/03/09 Re: [Bioc-sig-seq] ChIPpeakAnno annotatePeakInBatch function Zhu, Julie
• 2010/03/09 Re: [Bioc-sig-seq] ChIPpeakAnno annotatePeakInBatch function Zhu, Julie
• 2010/03/09 [Bioc-sig-seq] ChIPpeakAnno annotatePeakInBatch function Amy Molesworth
• 2010/03/09 Re: [Bioc-sig-seq] ChIPpeakAnno annotatePeakInBatch function Ivan Gregoretti
• 2010/03/08 [Bioc-sig-seq] novoalign format support Wu, Xiwei
• 2010/03/08 Re: [Bioc-sig-seq] BSGenome: Intermittent failure in getSeq, matchPattern and findOverlaps Seth Falcon
• 2010/03/08 Re: [Bioc-sig-seq] Getting optional fields from BAM file using Rsamtools Steve Lianoglou
• 2010/03/08 [Bioc-sig-seq] BSGenome: Intermittent failure in getSeq, matchPattern and findOverlaps Aaron Statham
• 2010/03/08 Re: [Bioc-sig-seq] Getting optional fields from BAM file using Rsamtools Martin Morgan
• 2010/03/06 Re: [Bioc-sig-seq] goseq or edgeR error Vincent Carey
• 2010/03/05 [Bioc-sig-seq] goseq or edgeR error joseph
• 2010/03/05 Re: [Bioc-sig-seq] potential bug either in strandFilter (ShortRead) or estimate.mean.fraglen (chipseq) Martin Morgan
• 2010/03/05 [Bioc-sig-seq] potential bug either in strandFilter (ShortRead) or estimate.mean.fraglen (chipseq) Johannes Rainer
• 2010/03/04 [Bioc-sig-seq] chipseq: error in estimate.mean.fraglen method="correlation" Johannes Rainer
• 2010/03/03 Re: [Bioc-sig-seq] makeTranscriptDbFromUCSC question Hervé Pagès
• 2010/03/03 Re: [Bioc-sig-seq] Parallel version of the Biostrings::read.DNAStringSet and write.XStringSet functions ? Steve Lianoglou
• 2010/03/03 Re: [Bioc-sig-seq] makeTranscriptDbFromUCSC question Marc Carlson
• 2010/03/03 Re: [Bioc-sig-seq] Parallel version of the Biostrings::read.DNAStringSet and write.XStringSet functions ? mtmorgan
• 2010/03/03 [Bioc-sig-seq] makeTranscriptDbFromUCSC question joseph
• 2010/03/03 Re: [Bioc-sig-seq] chipseq infrastructure Raphael Gottardo
• 2010/03/02 Re: [Bioc-sig-seq] chipseq infrastructure Vincent Carey
• 2010/03/02 Re: [Bioc-sig-seq] chipseq infrastructure Vincent Carey
• 2010/03/02 Re: [Bioc-sig-seq] GenomicFeatures vignette error Vincent Carey
• 2010/03/02 [Bioc-sig-seq] GenomicFeatures vignette error joseph
• 2010/03/02 [Bioc-sig-seq] Parallel version of the Biostrings::read.DNAStringSet and write.XStringSet functions ? Sirisha Sunkara
• 2010/03/02 Re: [Bioc-sig-seq] Getting optional fields from BAM file using Rsamtools Martin Morgan
• 2010/03/02 [Bioc-sig-seq] Getting optional fields from BAM file using Rsamtools Steve Lianoglou
• 2010/03/02 Re: [Bioc-sig-seq] chipseq infrastructure Raphael Gottardo
• 2010/03/01 Re: [Bioc-sig-seq] chipseq infrastructure Michael Lawrence
• 2010/03/01 Re: [Bioc-sig-seq] peak calling/detection algorithm available in Bioconductor? Deepayan Sarkar
• 2010/03/01 Re: [Bioc-sig-seq] chipseq infrastructure Deepayan Sarkar
• 2010/03/01 Re: [Bioc-sig-seq] chipseq infrastructure Michael Lawrence
• 2010/03/01 [Bioc-sig-seq] chipseq infrastructure Michael Lawrence
• 2010/03/01 Re: [Bioc-sig-seq] peak calling/detection algorithm available in Bioconductor? Heidi Dvinge
• 2010/03/01 Re: [Bioc-sig-seq] peak calling/detection algorithm available in Bioconductor? Johannes Rainer
• 2010/03/01 Re: [Bioc-sig-seq] peak calling/detection algorithm available in Bioconductor? Michael Lawrence
• 2010/03/01 Re: [Bioc-sig-seq] peak calling/detection algorithm available in Bioconductor? Steve Lianoglou
• 2010/03/01 Re: [Bioc-sig-seq] peak calling/detection algorithm available in Bioconductor? Johannes Rainer
• 2010/03/01 Re: [Bioc-sig-seq] peak calling/detection algorithm available in Bioconductor? Droit Arnaud
• 2010/03/01 Re: [Bioc-sig-seq] peak calling/detection algorithm available in Bioconductor? Michael Lawrence
• 2010/03/01 Re: [Bioc-sig-seq] peak calling/detection algorithm available in Bioconductor? Johannes Rainer
• 2010/03/01 Re: [Bioc-sig-seq] peak calling/detection algorithm available in Bioconductor? Michael Lawrence
• 2010/03/01 Re: [Bioc-sig-seq] peak calling/detection algorithm available in Bioconductor? Johannes Rainer
• 2010/03/01 Re: [Bioc-sig-seq] peak calling/detection algorithm available in Bioconductor? Martin Morgan
• 2010/03/01 Re: [Bioc-sig-seq] peak calling/detection algorithm available inBioconductor? Muino, Jose
• 2010/03/01 [Bioc-sig-seq] peak calling/detection algorithm available in Bioconductor? Johannes Rainer
• 2010/02/28 Re: [Bioc-sig-seq] strand() in ShortRead, Rsamtools Martin Morgan
• 2010/02/28 Re: [Bioc-sig-seq] strand() in ShortRead, Rsamtools Martin Morgan
• 2010/02/28 Re: [Bioc-sig-seq] strand() in ShortRead, Rsamtools Kasper Daniel Hansen
• 2010/02/28 [Bioc-sig-seq] strand() in ShortRead, Rsamtools Martin Morgan
• 2010/02/28 Re: [Bioc-sig-seq] GRanges object from AlignedRead? Martin Morgan
• 2010/02/28 Re: [Bioc-sig-seq] GRanges object from AlignedRead? Patrick Aboyoun
• 2010/02/27 [Bioc-sig-seq] GRanges object from AlignedRead? joseph
• 2010/02/27 Re: [Bioc-sig-seq] ShortRead support for "id", "paired read number" and "multiplex index" when reading an Illumina export file Martin Morgan
• 2010/02/26 Re: [Bioc-sig-seq] Arabidopsis reference genome Muino, Jose
• 2010/02/26 Re: [Bioc-sig-seq] Arabidopsis reference genome Muino, Jose
• 2010/02/25 [Bioc-sig-seq] Arabidopsis reference genome Michael Krogh Jensen
• 2010/02/25 Re: [Bioc-sig-seq] error with export {rtracklayer} Patrick Aboyoun
• 2010/02/25 [Bioc-sig-seq] error with export {rtracklayer} joseph
• 2010/02/25 Re: [Bioc-sig-seq] error with export {rtracklayer} Michael Lawrence
• 2010/02/24 Re: [Bioc-sig-seq] ShortRead support for "id", "paired read number" and "multiplex index" when reading an Illumina export file Martin Morgan
• 2010/02/24 [Bioc-sig-seq] ShortRead support for "id", "paired read number" and "multiplex index" when reading an Illumina export file Nicolas Delhomme
• 2010/02/23 Re: [Bioc-sig-seq] geneMouse dataset from chipseq Michael Lawrence
• 2010/02/23 [Bioc-sig-seq] geneMouse dataset from chipseq Fuad Gwadry
• 2010/02/22 Re: [Bioc-sig-seq] apply/sapply for DNAStringSet class or FastqQuality class? Martin Morgan
• 2010/02/22 Re: [Bioc-sig-seq] apply/sapply for DNAStringSet class or FastqQuality class? Johannes Rainer
• 2010/02/22 Re: [Bioc-sig-seq] apply/sapply for DNAStringSet class or FastqQuality class? Martin Morgan
• 2010/02/22 [Bioc-sig-seq] apply/sapply for DNAStringSet class or FastqQuality class? Johannes Rainer
• 2010/02/20 Re: [Bioc-sig-seq] Rsamtools problem Hervé Pagès
• 2010/02/19 Re: [Bioc-sig-seq] ReadFastq error Hervé Pagès
• 2010/02/19 Re: [Bioc-sig-seq] BSgenome installation error from SVN Wolfgang Huber
• 2010/02/19 Re: [Bioc-sig-seq] ReadFastq error Hervé Pagès
• 2010/02/19 Re: [Bioc-sig-seq] ReadFastq error Ramzi TEMANNI
• 2010/02/19 Re: [Bioc-sig-seq] ReadFastq error Seth Falcon
• 2010/02/19 Re: [Bioc-sig-seq] BSgenome installation error from SVN Nicolas Delhomme
• 2010/02/19 Re: [Bioc-sig-seq] BSgenome installation error from SVN Kasper Daniel Hansen
• 2010/02/19 Re: [Bioc-sig-seq] BSgenome installation error from SVN Sean Davis
• 2010/02/19 Re: [Bioc-sig-seq] BSgenome installation error from SVN Nicolas Delhomme
• 2010/02/19 Re: [Bioc-sig-seq] BSgenome installation error from SVN Kasper Daniel Hansen
• 2010/02/19 Re: [Bioc-sig-seq] BSgenome installation error from SVN Droit Arnaud
• 2010/02/19 Re: [Bioc-sig-seq] BSgenome installation error from SVN Sean Davis
• 2010/02/19 [Bioc-sig-seq] BSgenome installation error from SVN Nicolas Delhomme
• 2010/02/19 Re: [Bioc-sig-seq] ReadFastq error Ramzi TEMANNI
• 2010/02/18 Re: [Bioc-sig-seq] ReadFastq error Martin Morgan
• 2010/02/18 Re: [Bioc-sig-seq] ReadFastq error Ramzi TEMANNI
• 2010/02/18 Re: [Bioc-sig-seq] ReadFastq error Martin Morgan
• 2010/02/18 [Bioc-sig-seq] ReadFastq error Ramzi TEMANNI
• 2010/02/17 Re: [Bioc-sig-seq] Rsamtools problem Kasper Daniel Hansen
• 2010/02/17 [Bioc-sig-seq] trimLRPatters: inconstitency re max.[LR]mismatch Simon Anders
• 2010/02/17 Re: [Bioc-sig-seq] trimLRPatters: inconstitency re max.[LR]mismatch Harris A. Jaffee
• 2010/02/17 Re: [Bioc-sig-seq] Rsamtools problem Steve Lianoglou
• 2010/02/17 Re: [Bioc-sig-seq] Rsamtools problem Droit Arnaud
• 2010/02/17 Re: [Bioc-sig-seq] trimLRPatters: inconstitency re max.[LR]mismatch Harris A. Jaffee
• 2010/02/17 Re: [Bioc-sig-seq] trimLRPatters: inconstitency re max.[LR]mismatch Patrick Aboyoun
• 2010/02/17 Re: [Bioc-sig-seq] Rsamtools problem Patrick Aboyoun
• 2010/02/17 [Bioc-sig-seq] Rsamtools problem Droit Arnaud
• 2010/02/16 Re: [Bioc-sig-seq] Using SVN for a "data package" with HTS data -- howto??? Sean Davis
• 2010/02/16 [Bioc-sig-seq] Using SVN for a "data package" with HTS data -- howto??? Leonardo Collado Torres
• 2010/02/16 Re: [Bioc-sig-seq] RangedData objects. Redefining widths with conditions. Ivan Gregoretti
• 2010/02/16 Re: [Bioc-sig-seq] RangedData objects. Redefining widths with conditions. Ivan Gregoretti
• 2010/02/16 Re: [Bioc-sig-seq] RangedData objects. Redefining widths with conditions. Michael Lawrence
• 2010/02/16 [Bioc-sig-seq] RangedData objects. Redefining widths with conditions. Ivan Gregoretti
• 2010/02/12 Re: [Bioc-sig-seq] strandedness bug in Rsamtools? Martin Morgan
• 2010/02/12 Re: [Bioc-sig-seq] locally aligned reads Martin Morgan
• 2010/02/12 Re: [Bioc-sig-seq] locally aligned reads Patrick Aboyoun
• 2010/02/12 [Bioc-sig-seq] locally aligned reads Hans-Ulrich Klein
• 2010/02/12 Re: [Bioc-sig-seq] ShortRead sequences Muino, Jose
• 2010/02/11 Re: [Bioc-sig-seq] Annotation of ChIP-Seq peaks Muino, Jose
• 2010/02/11 Re: [Bioc-sig-seq] ShortRead sequences Martin Morgan

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