[galaxy-dev] (no subject)

.org/GalaxyUpdates/2014_11#New_Public_Servers> - 35 new ToolShed repos <https://wiki.galaxyproject.org/GalaxyUpdates/2014_11#ToolShed_Contributions> - And a smattering of other news <https://wiki.galaxyproject.org/GalaxyUpdates/2014_11#Other_News> too Dave Clem

Re: [galaxy-dev] Is the "new tool repositories summary" in the monthly newsletter useful?

n make the progress easier for > you to collect this information. The idea was to create automatically > Trello cards for IUC and devteam tools and maybe a summary page in the > Tool Shed. > > Cheers, > Bjoern > > Am 15.10.2014 um 06:52 schrieb Dave Clements: > > H

[galaxy-dev] Galaxy Training Network

Hello all, We are pleased to announce the *Galaxy Training Network (GTN) *, a network of trainers who teach bioinformatics using Galaxy, or teach about Galaxy itself. The GTN aims to make it easy to find Galaxy trainers

Re: [galaxy-dev] Is the "new tool repositories summary" in the monthly newsletter useful?

Hello all, Well, the results are unanimous: Keep it; it's worth the time invested Where to put it was far from unanimous, so we'll experiment with putting it in both the monthly newsletter and dev news briefs. Thanks all, Dave C. On Wed, Oct 8, 2014 at 9:42 AM, Dave Clements wr

Re: [galaxy-dev] Is the "new tool repositories summary" in the monthly newsletter useful?

Hi Peter, all, I've added post in both places as an option. So far we only have two responses ... Thanks, Dave C On Wed, Oct 8, 2014 at 1:16 AM, Peter Cock wrote: > On Wed, Oct 8, 2014 at 12:49 AM, Dave Clements > wrote: > > Hi All, > > > > The October Gala

[galaxy-dev] Is the "new tool repositories summary" in the monthly newsletter useful?

Hi All, The October Galaxy newsletter went out a week ago. Buried at the bottom is this - 36 new ToolShed repos which lists repositories that have been published in the Galaxy Project ToolShed in the previo

[galaxy-dev] October 2014 Galaxy Newsletter

alaxyproject.org/GalaxyUpdates/2014_10#Community_Galaxy_Hubs> - 36 new ToolShed repos <https://wiki.galaxyproject.org/GalaxyUpdates/2014_10#ToolShed_Contribution> - And a smattering of other news <https://wiki.galaxyproject.org/GalaxyUpdates/2014_10#O

[galaxy-dev] 2014 Galaxy Questionnaire

Hello all, The Galaxy Project is preparing for our next grant cycle and we are seeking your feedback and comments on on all things Galaxy. We have created two questionnaires, each focused on a different way to interact with Galaxy: 1. *Galaxy User Questionnaire

[galaxy-dev] Proposal: Create a public archive of the GalaxyProject IRC Channel

Hello all, We would like to change the logging policy for the #galaxyproject IRC channel : - *Starting later this fall, the #galaxyproject IRC channel will be logged onlin

[galaxy-dev] September 2014 Galaxy News

yproject.org/GalaxyUpdates/2014_09#Who.27s_Hiring>, and a double dose of new ToolShed contributions <https://wiki.galaxyproject.org/GalaxyUpdates/2014_09#ToolShed_Contributions> . Happy September, Dave Clements and the Galaxy Team <https://wiki.galaxyproject.org/GalaxyTeam> --

[galaxy-dev] Developer Events in Europe this Fall: Swiss-German Galaxy Tour

Hello all, The *2014 Swiss-German Galaxy Tour * is happening from 30 September through 2 October. The tour features 3 events and they will all be great ways to meet fellow developers, and learn more about defining tools and deploying and administering

[galaxy-dev] August 2014 Galaxy Newsletter

rg/GalaxyUpdates/2014_08#New_Public_Servers> - Who's hiring? <https://wiki.galaxyproject.org/GalaxyUpdates/2014_08#Who.27s_Hiring> It turns out that lots of places are. Happy August, Dave Clements and the Galaxy Team <https://wiki.galaxyproject.org/GalaxyTe

[galaxy-dev] 2014 Galaxy Community Conference June 6 Registration Deadline (this Friday)

roject.org/Events/GCC2014/Hackathon> (only 8 spaces left) Please do let us know if you have any questions. We would love to see you in Baltimore. Thanks, Dave Clements > *2014 Galaxy Community Conference (GCC2014) > <http://galaxyproject.org/GCC2014>*http://galaxyproj

[galaxy-dev] June 2014 Galaxy Update Newsletter: GCC2014 registration closes in 1 week!

org/GalaxyUpdates/2014_06#Galaxy_Community_Hubs> - and a stunning number of ToolShed contributions <https://wiki.galaxyproject.org/GalaxyUpdates/2014_06#ToolShed_Contributions> Please let us know if you have anything to include in the July newsletter, and we will see you in Baltimor

[galaxy-dev] GCC2014 Early Registration closes this Friday, May 23

Hello all, This just a reminder that early registration for the 2014 Galaxy Community Conference (GCC2014) *closes this Friday, May 23* Register early and *avoid paying 70% more for regular regi

[galaxy-dev] May 2014 Galaxy News Update

ject.org/GalaxyUpdates/2014_05#New_Public_Tool_Sheds> (at the Dutch Techcentre for Life Sciences (DTL) <http://www.dtls.nl/dtl/>. Dave Clements and the Galaxy Team<https://wiki.galaxyproject.org/GalaxyTeam> http://galaxyproject.org/GCC2014 http://galaxyproject.org/ http://getgalaxy.org/ ht

[galaxy-dev] GCC2014 Poster Abstracts due April 25, THIS FRIDAY

rg/Events/GCC2014/Abstracts>for accepted talks will start showing up on the website this week. Thanks, and hope to see you in Baltimore, Dave C On Fri, Feb 14, 2014 at 1:33 PM, Dave Clements wrote: > Hello all, > > *We are pleased to announce that Early Registration > <https://w

[galaxy-dev] April 2014 Galaxy Update Newsletter: GCC2014 Talk Abstracts due this Friday

14_04#Other_News> as well. If you have anything you would like to see in the next *Galaxy Update <https://wiki.galaxyproject.org/GalaxyUpdates>*, please let us know. Dave Clements and the Galaxy Team<https://wiki.galaxyproject.org/GalaxyTeam> -- http://galaxyp

Re: [galaxy-dev] GCC2014 Early Registration and Abstract Submission are now OPEN!

Fri, Feb 14, 2014 at 1:33 PM, Dave Clements wrote: > Hello all, > > *We are pleased to announce that Early Registration > <https://wiki.galaxyproject.org/Events/GCC2014/Register> and Talk and > Poster Abstract Submission > <https://wiki.galaxyproject.org/Events/GCC2014/

[galaxy-dev] BOSC 2014 Call for Abstracts

Hello all The call for abstracts for BOSC 2014 is out. See below for details. If you have questions I'm sure that Peter, Brad, Chris, and Hans-Rudolf, all frequent contributors to this list, would be answer them. And glad to see that GigaScience, a GCC sponsor, is also sponsoring BOSC this year

[galaxy-dev] March 2014 Galaxy Update Newsletter

xyUpdates/2014_03#Galaxy_Distributions> - Tool Shed Contributions<https://wiki.galaxyproject.org/GalaxyUpdates/2014_03#ToolShed_Contributions> - Other News<https://wiki.galaxyproject.org/GalaxyUpdates/2014_03#Other_News> If you have anything you would like to see in the next *Galaxy Updat

[galaxy-dev] GCC2014 Early Registration and Abstract Submission are now OPEN!

Hello all, *We are pleased to announce that Early Registration and Talk and Poster Abstract Submission are now open for the 2014 Galaxy Community Conference (GCC2014)

Re: [galaxy-dev] Remote User Logout

Hi Eric, > > I figured this was as good of a time as any... > I moved the AD/LDAP/External authentication out of the Apache Proxy page > (who would think to look there?) and into its own page. I added my > organisation's information on mod_auth_kerb while I was at it. > > That seemed like a reason

[galaxy-dev] February 2014 Galaxy Update Newsletter

- Other News<https://wiki.galaxyproject.org/GalaxyUpdates/2014_02#Other_News> If you have anything you would like to see in the next *Galaxy Update <https://wiki.galaxyproject.org/GalaxyUpdates>*, please let us know. Dave Clements and the Galaxy Team<https://wiki.galax

Re: [galaxy-dev] Remote User Logout

Hi Eric, Tim, > > Hi Tim, > > Amazing! Thank you for sharing that code. That'll save me some work when > I get around to implementing it on my galaxies. I'll add a Wiki page for > it later today, lest this knowledge be lost to the mailing list. > That is an excellent suggestion. I've created a l

[galaxy-dev] Galaxy Australasia Workshop (GAW 2014), 24-25 March, Melbourne

Hello all, *We are pleased to announce the 1st Galaxy Australasia Workshop 2014 (GAW 2014) will be held in Melbourne, Australia on 24 and 25th March 2014.* The Galaxy Australasia Workshop is a great op

[galaxy-dev] GCC2014 Training Day Topic Voting open January 6-17

Hello all, What topics should be offered at the GCC2014 Training Day ? Topics for the GCC2014 Training Day are selecte

[galaxy-dev] January 2014 Galaxy Update Newsletter

xyproject.org/GalaxyUpdates/2014_01#ToolShed_Contributions> - Other News<https://wiki.galaxyproject.org/GalaxyUpdates/2014_01#Other_News> If you have anything you would like to see in the next *Galaxy Update <https://wiki.galaxyproject.org/GalaxyUpdates>*,

Re: [galaxy-dev] GCC2014 Training Day: Topic Nomination is now open

nate a topic <http://bit.ly/gcc2014tdnom> before the end of this Friday.* Thanks, Dave C, on behalf of the GCC2014 Organizing Committee On Mon, Dec 2, 2013 at 10:32 AM, Dave Clements wrote: > Hello all, > > Training Day topics are nominated by you <http://bit.ly/gcc2014tdnom&

[galaxy-dev] Announcing the Galaxy Community Log Board

2013 GalaxyAdmins Birds-of-a-Feather gathering <http://wiki.galaxyproject.org/Events/GCC2013/BoF/GalaxyAdmins>. Thanks to everyone who attended that BoF. Dave Clements -- http://galaxyproject.org/ http://getgalaxy.org/ http://usegalaxy.org/ http://wiki.galaxyproject.org/ _

[galaxy-dev] Announcing the Galaxy Deployment Catalog!

Hello all, *I am pleased to formally announce the Galaxy Deployment Catalog *, a place to describe individual Galaxy deployments, and to learn how others in the community are implementing Galaxy in production environments. If you have a Galaxy

Re: [galaxy-dev] survey

Hello Philip, all I'm working on a complementary effort that I was going to announce later this week, but maybe I'll just introduce it now. Something that came out of the GalaxyAdmins meetup in Oslo was a desire for some way for the community to describe the details of their Galaxy deployments to

[galaxy-dev] GCC2014 Training Day: Topic Nomination is now open

Hello all, Training Day topics are nominated by you , the Galaxy Community. Please take a minute to nominate a topic. Any topic of interest to the Galaxy Community can be nominated and you are encouraged to nominate more than one topic. If you are looking for ideas, see

[galaxy-dev] December 2013 Galaxy Update

) - Other News<http://wiki.galaxyproject.org/GalaxyUpdates/2013_12#Other_News> If you have anything you would like to see in the next *Galaxy Update <http://wiki.galaxyproject.org/GalaxyUpdates>*, please let us know. Thanks for an excellent year, Dave Clements and the

Re: [galaxy-dev] Next GalaxyAdmins Meetup: November 20

e to connect. Thanks, Dave C On Thu, Nov 14, 2013 at 12:00 AM, Dave Clements wrote: > Hello all, > > The next GalaxyAdmins meetup will be Wednesday, November 20, at 10am US > Central time. See the meetup > page<http://wiki.galaxyproject.org/Community/GalaxyAdmins/Meetups/2

Re: [galaxy-dev] wiki contributions: Admin/Config/ProFTPd_with_AD

Hi Eric, I've pasted the text into the http://wiki.galaxyproject.org/Admin/Config/ProFTPd_with_AD page. I used the Apache syntax highlighter for the ProFTPd configuration file snippets, which I'm pretty sure is not exactly right, but I'm guessing it's close enough. To unlock a page for editing y

[galaxy-dev] Next GalaxyAdmins Meetup: November 20

Hello all, The next GalaxyAdmins meetup will be Wednesday, November 20, at 10am US Central time. See the meetup page for a link and directions for connecting to the meetup. *GCC2013 GalaxyAdmins BoF Followup* This is our

[galaxy-dev] November 2013 Galaxy Update Newsletter

Tool Shed contributions<http://wiki.galaxyproject.org/GalaxyUpdates/2013_11#Tool_Shed_Contributions> If you have anything you would like to see in the next *Galaxy Update<http://wiki.galaxyproject.org/GalaxyUpdates> *, please let us know. Dave Clements and the Galaxy Team <http:/

[galaxy-dev] Please save these dates! GCC2014: June 30 - July 2

Hello all, The 2014 Galaxy Community Conference (GCC2014) has been scheduled for June 30 through July 2, at the Homewood Campus of Johns Hopkins University

[galaxy-dev] October Galaxy Update Newsletter is out

More Tool Shed contributions<http://wiki.galaxyproject.org/GalaxyUpdates/2013_10#Tool_Shed_Contributions> than you can shake a stick at. If you have anything you would like to see in the next *Galaxy Update<http://wiki.galaxyproject.org/GalaxyUpdates> *, please let us know. Dav

Re: [galaxy-dev] August 2013 Galaxy Update Newsletter is out

going forward. And it's on a Vimeo Plus account, so you won't see any ads for phones, football teams, telescopes, or faster than light travel. :-) Dave C On Mon, Aug 12, 2013 at 12:28 PM, Dave Clements wrote: > Hi Samuel, everyone, > > Our main reason for avoiding these ad suppo

Re: [galaxy-dev] Creating Galaxy Admin / Local Install Mailing List - Updates?

Hi Hans-Rudolf, Adam, As the BoF page indicates, we decided not to do this, for the reasons listed on the page. So, for now, we won't create a separate email list, or use MailMan topics (which I had high hopes for). However, we may not be done with this yet. The plan is still to move Galaxy-Use

Re: [galaxy-dev] ZFS storage recommendations

Hi Joachim, Something that may help with benchmarking: At the July 2012 GalaxyAdmins meetup, Anne Black-Ziegelbein talked about how they evaluated filesystem options. She also included benchmarking scripts and data. See http://wiki.galaxyproject.org/Community/GalaxyAdmins/Meetups/2012_07_09

[galaxy-dev] Statistical Genomics Post-doctoral Position in Makova Lab at Penn State

Hello all, There's a post-doc opening in the Makova Lab at Penn State. See below. Dave C Are you interested in genomics and do you have skills in Bioinformatics, Computational Biology and Statistics? The Makova lab in the Department of Biology at The Pennsylvania State University is looking to

[galaxy-dev] August 2013 Galaxy Update Newsletter is out

ki.galaxyproject.org/GalaxyUpdates> *, please let us know. Dave Clements and the Galaxy Team -- http://galaxyproject.org/GCC2013 http://galaxyproject.org/ http://getgalaxy.org/ http://usegalaxy.org/ http://wiki.galaxyproject.org/ ___ Plea

[galaxy-dev] Galaxy Release Cycle Length

Hello all, At one of the GCC2013 Birds of a Feather sessions the group was very clear that they would like to see less frequent releases of Galaxy. We're currently aiming to do a release every 2 months and have been pretty succ

Re: [galaxy-dev] August 2013 Galaxy Update Newsletter is out

Hi Samuel, everyone, Our main reason for avoiding these ad supported services is that we don't want people to have to deal with ads to see Galaxy Video content. Dave C On Sat, Aug 10, 2013 at 2:54 AM, Samuel Lampa wrote: > On 08/08/2013 07:38 PM, Dave Clements wrote: > >

Re: [galaxy-dev] August 2013 Galaxy Update Newsletter is out

hanks for the hard work with putting all this up! (I > know it is a tremendous lot of work) > > Best Regards > // Samuel > > > > On 07/31/2013 07:51 PM, Dave Clements wrote: > >> >> Hello all, >> >> The August 2013 Galaxy Update is now available < &

[galaxy-dev] 2014 Galaxy Training Survey

Hello all, The Galaxy Project is asking for your help on how we should focus our training efforts for the coming year. If you are interested in Galaxy Training, please take a few minutes to let us know what you would like to see offered, and where you would like training to be held: http://bit.

[galaxy-dev] August 2013 Galaxy Update Newsletter is out

g/GalaxyUpdates/2013_08#Tool_Shed_Contributions> - Other News<http://wiki.galaxyproject.org/GalaxyUpdates/2013_08#Other_News> If you have anything you would like to see in the next *Galaxy Update<http://wiki.galaxyproject.org/GalaxyUpdates> *, please let us know. Da

[galaxy-dev] (no subject)

t *Galaxy Update<http://wiki.galaxyproject.org/GalaxyUpdates> *, please let us know. Dave Clements and the Galaxy Team -- http://galaxyproject.org/GCC2013 http://galaxyproject.org/ http://getgalaxy.org/ http://usegalaxy.org/ http://wiki.galaxyproject.org/ __

[galaxy-dev] GCC2013 Regular Registration closes June 14

Hello all, This is a reminder that registrationfor the 2013 Galaxy Community Conference (GCC2013) closes June 14*, just ten days from today. *Registering now

Re: [galaxy-dev] Information for Galaxy Event Horizon

Hi Sarah, We'd be happy to put this on the Galaxy Event Horizon page on the wiki. Since the event is over, we would list it in the past events section. Is there a web page for the workshop or slides that we can link to? And, for future reference, wiki update requests can be sent directly to Gal

[galaxy-dev] June 2013 Galaxy Update

y *Galaxy Update<http://wiki.galaxyproject.org/GalaxyUpdates> *, please let us know. Dave Clements and the Galaxy Team <http://wiki.galaxyproject.org/GalaxyTeam> -- http://galaxyproject.org/GCC2013 http://galaxyproject.org/ h

Re: [galaxy-dev] Next GalaxyAdmins Meetup: May 15; Galaxy @ Pathogen Portal

that long to get setup. Thanks, Dave C. On Wed, May 8, 2013 at 11:23 AM, Dave Clements wrote: > Hello all, > > The next > meeting<http://wiki.galaxyproject.org/Community/GalaxyAdmins/Meetups/2013_05_15> > of > the GalaxyAdmins Group<http://wiki.galaxyproject.org

[galaxy-dev] Next GalaxyAdmins Meetup: May 15; Galaxy @ Pathogen Portal

GalaxyAdmins <http://wiki.galaxyproject.org/Community/GalaxyAdmins> is a discussion group for Galaxy community members who are responsible for large Galaxy installations. Thanks, Dave Clements -- http://galaxyproject.org/GCC2013 http://galaxyproject.org/ http://getgalaxy.org/ http://usegal

[galaxy-dev] May 2013 Galaxy Update

_Shed_Contributions> - Other News<http://wiki.galaxyproject.org/GalaxyUpdates/2013_05#Other_News> If you have anything you would like to see in the June *Galaxy Update<http://wiki.galaxyproject.org/GalaxyUpdates> *, please let us know. Dave Clements and the Galaxy Team <http://wiki.galaxyproj

Re: [galaxy-dev] Teaching using Galaxy

puter right now and I'm already getting > familiar with it). The hardware on which I'll set the instance for the > course is another issue, but this is not the topic of this email... > > I'll have a better look at how I could use published histories and > workflows... &

Re: [galaxy-dev] Teaching using Galaxy

Hi David, Using Galaxy to teach undergraduates is a long term interest of mine. Which, unfortunately, does not mean I have yet put a lot of thought into it. However, lack of thought hasn't stopped me yet. First, this topic was discussed in a breakout at last year's GCC: http://wiki.galaxyproje

Re: [galaxy-dev] GalaxyAdmins Group: Future Directions?

d have far less traffic than Galaxy-Dev. I'm in favor of it. If you have an opinion, please post here. Thanks, Dave C On Wed, Apr 10, 2013 at 1:32 PM, Dave Clements wrote: > Hello all, > > First, thanks to Srinivas and Hans for the responses. > > > I have kept track of

[galaxy-dev] Fwd: [Gmod-announce] 2013 GMOD Summer School: Apply now!

Hello all, The 2013 GMOD Summer School is now accepting applications. Galaxy will again be included in the topics covered. And Amelia says: Applications are competitive, so we encourage you to apply well before the > deadline, June 10th. So, if you are interested, act soon. Dave C -

Re: [galaxy-dev] GalaxyAdmins Group: Future Directions?

riginal Message- > From: Hans-Rudolf Hotz > Date: Monday, April 8, 2013 3:21 AM > To: Srinivas Maddhi , Dave Clements > > Cc: Galaxy Dev List > Subject: Re: [galaxy-dev] GalaxyAdmins Group: Future Directions? > > >Hi Srinivas > > > >Thank you very much

[galaxy-dev] GCC2013 Talk Abstract Submission closes this Friday

rously cover the article processing fees for these articles. See the announcement <http://wiki.galaxyproject.org/News/GigaScienceGalaxyCFP>for details. Thanks, Dave C On Mon, Feb 25, 2013 at 3:40 AM, Dave Clements wrote: > Dear Galaxy Community, > > We are pleased to announce

[galaxy-dev] Call for papers for a special GCC2013 and Galaxy series in GigaScience

Hello all, I am pleased to inform you that talks presented at the 2013 Galaxy Community conference will be eligible for consideration to be published in the journal *GigaScience* and that BGI will generously cover the article processing fees for these articles. See the announcement below for deta

[galaxy-dev] April 2013 Galaxy Update

ything you would like to see in the May *Galaxy Update<http://wiki.galaxyproject.org/GalaxyUpdates> *, please let us know. Dave Clements and the Galaxy Team <http://wiki.galaxyproject.org/GalaxyTeam> -- http://galaxyproject.org/GCC2013 htt

[galaxy-dev] GalaxyAdmins Group: Future Directions?

Hello all, The GalaxyAdmins group is coming up on it's one year anniversary (coinciding with GCC2013) and this is a good opportunity to discuss what the future of the group should be. Some starting topics for discussion are on the GalaxyAdmins Future Directions page (http://wiki.galaxyproject.org

[galaxy-dev] GCC2013 Oral Presentation Abstract Submission Closes 12 April

, 2013 at 7:40 PM, Dave Clements wrote: > Dear Galaxy Community, > > We are pleased to announce that early > registration<http://wiki.galaxyproject.org/Events/GCC2013/Register> > and paper and poster abstract > submission<http://wiki.galaxyproject.org/Events/GCC2013/Ab

Re: [galaxy-dev] Cloudman on openstack

Hi Zeeshan, There has actually been quite a bit of work on supporting CloudMan on OpenStack. The whole NECTAR deployment in Australia is based on OpenStack. What there has not been, as far as I know, is documentation about it. I suggest creating a Trello card on this (see http://wiki.galaxyproj

Re: [galaxy-dev] Search software on public Galaxy servers

Hi Bernardo, I'm intrigued by this idea. It might be possible to build a Google custom search, similar to the Tools tab of the usegalaxy search ( http://galaxyproject.org/search/usegalaxy/). That's would not be an ideal solution, but it would be quick to implement. Let me take a look at this in

[galaxy-dev] March 2013 Galaxy Update

Hello all, The March 2013 Galaxy Update is now available. See http://wiki.galaxyproject.org/GalaxyUpdates/2013_03. *Highlights include:* - *GCC2013 early registration

[galaxy-dev] 2013 Galaxy Community Conference (GCC2013) Registration and Abstract Submission are Now Open

Dear Galaxy Community, We are pleased to announce that early registration and paper and poster abstract submission are now open for the 2013 Galaxy Community Conference (GCC2013)

[galaxy-dev] Galaxy @ GMOD2013 & Biocuration 2013

so in Cambridge. Biocuration will feature a GO Galaxy Workshop<http://wiki.geneontology.org/index.php/GO_Galaxy_Workshop_at_Biocuration_2013> about using Galaxy to reason with ontologies. Thanks, Dave Clements -- <http://galaxyproject.org/wiki/GCC2012>http://galaxyproject.org/ http://getgalaxy.org/ http://use

Re: [galaxy-dev] Fwd: Desire to contribute

Hi Matt, Here are a couple of things to consider: 1. Fix Select tool to match special characters: https://trello.com/c/cwrBpNP9 2. Extend history export to include composite dataset objects/files: https://trello.com/c/oq1ASbkC There are lots of other ideas, but they tend to be a lot more work.

[galaxy-dev] February 2013 Galaxy Update

> - Other News<http://wiki.galaxyproject.org/GalaxyUpdates/2013_02#Other_News> If you have anything you would like to see in the March *Galaxy Update<http://wiki.galaxyproject.org/GalaxyUpdates> *, please let us know. Thanks, Dave Clements <http://wiki.galaxyproject.org/DaveCl

Re: [galaxy-dev] Wiki reset password's email never arrives

Hi Carlos, There does not appear to be an email address associated with your account. I will try to associate your account with your GMail account and let you know (off-list) when I think that is done. And, administrative requests like these can also be sent directly to outre...@galaxyproject.or

Re: [galaxy-dev] login problems

Hi Eleanne, Take a look at http://wiki.galaxyproject.org/FTPUpload. FTP also needs to be enabled on the Galaxy server you are using. Which server are you trying to connect to? Thanks, Dave C. On Fri, Jan 18, 2013 at 10:42 AM, Solorzano, Eleanne < eleanne.solorz...@unh.edu> wrote: > Hello

Re: [galaxy-dev] Problem uploading to Galaxy

Hi Andrew, If this was on Main at Penn State, there was a problem with uploads that we believe has now been resolved. Dave C On Wed, Jan 16, 2013 at 5:21 PM, Andrew Gorzalski wrote: > Hello, > > I've encountered a problem uploading some .xlsx files to Galaxy. None of > the files I've tried uplo

Re: [galaxy-dev] [galaxy-announce] GalaxyAdmins Meetup -- January 16 at 10 AM Central

Hello all, This is just a reminder that the next GalaxyAdmins web meetup is this Wednesday at 10am central US time. See http://wiki.galaxyproject.org/Community/GalaxyAdmins/Meetups/2013_01_16 for details. Thanks, Dave C. On Mon, Jan 7, 2013 at 10:59 AM, IIHG Galaxy Administrator < iihg-galaxy-

Re: [galaxy-dev] Galaxy for SNP chip data

Arthur, On Mon, Dec 31, 2012 at 2:03 PM, Goldberg, Arthur P < arthur.p.goldb...@mssm.edu> wrote: > > We have SNP microarrays about hundreds of subjects. In particular, samples > were processed on the Illumina Infinium HumanExome BeadChip, with 951,117 > markers.. Our project is collaborative, so

[galaxy-dev] January 2013 Galaxy Update

alaxyUpdates> *, please let us know. Wishing you the best possible new year, Dave Clements and the Galaxy Team -- <http://galaxyproject.org/wiki/GCC2012>http://galaxyproject.org/ http://getgalaxy.org/ http://usegalaxy.org/ http://wiki.galaxyproject.org/

Re: [galaxy-dev] hardware requirement for galaxy

Huayan, Take a look at http://wiki.galaxyproject.org/Community/GalaxyAdmins/SurveyResults for an idea of what infrastructure many Galaxy production servers use. That survey was taken this year. I also went to http://galaxyproject.org/search/mailinglists/ and found: http://dev.list.galaxyproject.

[galaxy-dev] December 2012 Galaxy Update

2#Tool_Shed_Contributions> - Other News<http://wiki.galaxyproject.org/GalaxyUpdates/2012_12#Other_News> If you have anything you would like to see in the January *Galaxy Update<http://wiki.galaxyproject.org/GalaxyUpdates> *, please let us know. Thanks, Dave Clements and the Galaxy Team <htt

Re: [galaxy-dev] Is there any timeout in Galaxy

Hi Akshay, I don't know the answer to your question. So: 1) I went to http://galaxyproject.org/search/web/ and searched for "timeout" and then "timeout workflow." There are lots of email threads (and I learned some stuff :-), but I didn't find a direct answer to your question. 2) I'm sending y

Re: [galaxy-dev] [galaxy-announce] GalaxyAdmins meeting -- Nov 14 at 10 AM Central

Hello all, Just a reminder that the November GalaxyAdmins web meetup is tomorrow, Wednesday, at 10 am central US time. Details are below. Please join us, Dave C On Mon, Nov 5, 2012 at 3:28 PM, IIHG Galaxy Administrator < iihg-galaxy-ad...@uiowa.edu> wrote: > Hello, > > The next meeting of t

Re: [galaxy-dev] Galaxy at Duke

Hi Alan, I'm CC'ing the Galaxy-Dev list on my response to your question. I talked with Jen Jackson on this. Her suggestion is that the symlink is most likely the problem somehow - this time. When in doubt, getting rid of these good place to start. So recommended starting solution to try - use f

[galaxy-dev] November 2012 Galaxy Update

lt;http://wiki.g2.bx.psu.edu/GalaxyUpdates/2012_11#Other_News> If you have anything you would like to see in the December *Galaxy Update<http://wiki.g2.bx.psu.edu/GalaxyUpdates> *, please let us know. Dave Clements and the Galaxy Team <http://wiki.g2.bx.psu.edu/GalaxyTeam> -- <

[galaxy-dev] October 2012 Galaxy Update

u have anything you would like to see in the November *Galaxy Update<http://wiki.g2.bx.psu.edu/GalaxyUpdates> *, please let me know. Thanks, Dave Clements -- <http://galaxyproject.org/wiki/GCC2012>http://galaxyproject.org/ http://g

[galaxy-dev] September 2012 Galaxy Update

tp://wiki.g2.bx.psu.edu/GalaxyUpdates/2012_09#Tool_Shed_Contributions> - Other News <http://wiki.g2.bx.psu.edu/GalaxyUpdates/2012_09#Other_News> If you have anything you would like to see in the October *Galaxy Update<http://wiki.g2.bx.psu.edu/GalaxyUpdates> *, please let me

[galaxy-dev] Galaxy-France -- Communauté française de Galaxy (French Galaxy Community)

nisez des formations avec Galaxy, Rejoignez nous en vous inscrivant à http://lists.bx.psu.edu/listinfo/galaxy-france Les archives de cette liste sont disponibles à http://france.list.galaxyproject.org A très bientôt sur la liste Galaxy France, Les administrateurs: Alban Lermine, Olivier Inizan, Ré

[galaxy-dev] August 2012 Galaxy Update

New Distribution<http://wiki.g2.bx.psu.edu/GalaxyUpdates/2012_08#New_Distributions> - Other News <http://wiki.g2.bx.psu.edu/GalaxyUpdates/2012_08#Other_News> If you have anything you would like to see in the September *Galaxy Update<http://wiki.g2.bx.psu.edu/GalaxyUpd

[galaxy-dev] GCC2012 Registration Deadline

Hello all, This is the final email reminder that the registration deadline for the 2012 Galaxy Community Conference, is at Midnight, Central US time, on Wednesday, July 18. If you aren't registered by the end of Wednesday, you will pay *double* using late/on-site registration. The deadline for b

[galaxy-dev] July 2012 Galaxy Update

call on July 9 or 10 - and lots of new screencasts, tutorials, and new genomes on main If you have anything you would like to see in the August *Galaxy Update<http://wiki.g2.bx.psu.edu/GalaxyUpdates> *, please let me know. Thanks, Dave Clements -- http://galaxyproject.org/GCC201

[galaxy-dev] GCC2012 Early Registration ENDS THIS MONDAY JUNE 11

ely used and deployed at research organizations of all sizes around the world. See you in Chicago! Dave Clements, on behalf of the GCC2012 Organizing Committee<http://galaxyproject.org/wiki/Events/GCC2012/Organizing%20Committee> Links: http://galaxyproject.org/GCC2012 <http://galaxypro

[galaxy-dev] GCC2012 Early Registration ends in 1 week

nd abstracts <http://wiki.g2.bx.psu.edu/Events/GCC2012/Abstracts> are also now available. Hope to see you in Chicago! Dave Clements, on behalf of the GCC2012 Organizing Committee<http://galaxyproject.org/wiki/Events/GCC2012/Organizing%20Committee> -- http://galaxyproject.org/GCC201

[galaxy-dev] June 2012 Galaxy Update

tes/2012_06#New_Distribution> - GalaxyCzars survey results are in<http://wiki.g2.bx.psu.edu/GalaxyUpdates/2012_06#Other_News> If you have anything you would like to see in the July *Galaxy Update<http://wiki.g2.bx.psu.edu/GalaxyUpdates> *, please let me know. Thanks, Dave Clem

Re: [galaxy-dev] Integrating Galaxy with JIRA for auto-ticket opening upon report

Hi Ann, This code has been to added to the queue of items to be folded into the main release. A developer will be in touch if and when they have questions. Thanks for submitting this. Dave C. On Wed, May 23, 2012 at 9:14 AM, Ann Black-Ziegelbein < annbl...@eng.uiowa.edu> wrote: > Hi - > > We

Re: [galaxy-dev] GCC2012 Update

r the duplicate emails, Dave C. On Mon, May 14, 2012 at 1:13 PM, Dave Clements wrote: > Hello all, > > The 2012 Galaxy Community Conference (GCC2012), being held in Chicago, > Illinois, July 25-27, is *now just 10 weeks away*. We have updates on: > > 1. Help set the topics covered o

[galaxy-dev] May 2012 Galaxy Update

and_Deadlines> - Tool Shed Contributions<http://wiki.g2.bx.psu.edu/GalaxyUpdates/2012_05#Tool_Shed_Contributions> As always, if you have anything you would like to see in the June *Galaxy Update <http://wiki.g2.bx.psu.edu/GalaxyUpdates>*, please let me know. Thanks, Dave Clement

Re: [galaxy-dev] Interested in speaking with other institutions deploying Galaxy locally?

Hi Ryan, Ann, and everyone else I second what Nate says (I always do :-). I too like that it is user driven. And, while I am not a developer, I do plan on being on the call as often as possible. I can also offer my support for logistical and any other support. Ann, please let me know if you wa

Re: [galaxy-dev] GCC2012 Abstract Submission Deadline is April 16, one week from today.

Hello all, Just a reminder that the abstract submission deadline for the 2012 Galaxy Community Conference (GCC2012) is TODAY. See http://wiki.g2.bx.psu.edu/Events/GCC2012/Abstracts for details. Thanks, Dave C On Mon, Apr 9, 2012 at 2:03 PM, Dave Clements wrote: > Hello all, > &g

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