://wiki.galaxyproject.org/GalaxyUpdates/2014_11#ToolShed_Contributions
-
And a smattering of other news
https://wiki.galaxyproject.org/GalaxyUpdates/2014_11#Other_News too
Dave Clements and the Galaxy Team
https://wiki.galaxyproject.org/GalaxyTeam
--
http://galaxyproject.org/
http
can make the progress easier for
you to collect this information. The idea was to create automatically
Trello cards for IUC and devteam tools and maybe a summary page in the
Tool Shed.
Cheers,
Bjoern
Am 15.10.2014 um 06:52 schrieb Dave Clements:
Hello all,
Well, the results
Hello all,
We are pleased to announce the *Galaxy Training Network (GTN)
https://wiki.galaxyproject.org/Teach/GTN*, a network of trainers who
teach bioinformatics using Galaxy, or teach about Galaxy itself. The GTN
aims to make it easy to find Galaxy trainers
Hello all,
Well, the results are unanimous: Keep it; it's worth the time invested
Where to put it was far from unanimous, so we'll experiment with putting it
in both the monthly newsletter and dev news briefs.
Thanks all,
Dave C.
On Wed, Oct 8, 2014 at 9:42 AM, Dave Clements cleme
Hi Peter, all,
I've added post in both places as an option.
So far we only have two responses ...
Thanks,
Dave C
On Wed, Oct 8, 2014 at 1:16 AM, Peter Cock p.j.a.c...@googlemail.com
wrote:
On Wed, Oct 8, 2014 at 12:49 AM, Dave Clements
cleme...@galaxyproject.org wrote:
Hi All
Hi All,
The October Galaxy newsletter went out a week ago. Buried at the bottom is
this
-
36 new ToolShed repos
https://wiki.galaxyproject.org/GalaxyUpdates/2014_10#ToolShed_Contributions
which lists repositories that have been published in the Galaxy Project
ToolShed in the
ToolShed repos
https://wiki.galaxyproject.org/GalaxyUpdates/2014_10#ToolShed_Contribution
-
And a smattering of other news
https://wiki.galaxyproject.org/GalaxyUpdates/2014_10#Other_News too
Happy October!
Dave Clements and the Galaxy Team
https://wiki.galaxyproject.org/GalaxyTeam
Hello all,
The Galaxy Project is preparing for our next grant cycle and we are seeking
your feedback and comments on on all things Galaxy. We have created two
questionnaires, each focused on a different way to interact with Galaxy:
1.
*Galaxy User Questionnaire
Hello all,
We would like to change the logging policy for the #galaxyproject IRC
channel https://wiki.galaxyproject.org/GetInvolved#IRC_Channel:
-
*Starting later this fall, the #galaxyproject IRC channel
https://wiki.galaxyproject.org/GetInvolved#IRC_Channel will be logged
online
://wiki.galaxyproject.org/GalaxyUpdates/2014_09#ToolShed_Contributions
.
Happy September,
Dave Clements and the Galaxy Team
https://wiki.galaxyproject.org/GalaxyTeam
--
http://galaxyproject.org/
http://getgalaxy.org/
http://usegalaxy.org/
https://wiki.galaxyproject.org
Hello all,
The *2014 Swiss-German Galaxy Tour
https://wiki.galaxyproject.org/Events/SG2014* is happening from 30
September through 2 October. The tour features 3 events and they will all
be great ways to meet fellow developers, and learn more about defining
tools and deploying and administering
-
Who's hiring?
https://wiki.galaxyproject.org/GalaxyUpdates/2014_08#Who.27s_Hiring It
turns out that lots of places are.
Happy August,
Dave Clements and the Galaxy Team
https://wiki.galaxyproject.org/GalaxyTeam
--
http://galaxyproject.org/
http://getgalaxy.org/
http://usegalaxy.org/
https
left)
Please do let us know if you have any questions. We would love to see you
in Baltimore.
Thanks,
Dave Clements
*2014 Galaxy Community Conference (GCC2014)
http://galaxyproject.org/GCC2014*http://galaxyproject.org/GCC2014
June 30 - July 2, 2014
Homewood Campus
http
https://wiki.galaxyproject.org/GalaxyUpdates/2014_06#ToolShed_Contributions
Please let us know if you have anything to include in the July newsletter,
and we will see you in Baltimore!
Dave Clements and the Galaxy Team
https://wiki.galaxyproject.org/GalaxyTeam
--
http://galaxyproject.org
Hello all,
This just a reminder that early
registrationhttps://wiki.galaxyproject.org/Events/GCC2014/Register
for
the 2014 Galaxy Community Conference
(GCC2014)https://wiki.galaxyproject.org/Events/GCC2014 *closes
this Friday, May 23* Register early and *avoid paying 70% more for regular
accepted talks will start showing up on the website this week.
Thanks, and hope to see you in Baltimore,
Dave C
On Fri, Feb 14, 2014 at 1:33 PM, Dave Clements
cleme...@galaxyproject.orgwrote:
Hello all,
*We are pleased to announce that Early Registration
https://wiki.galaxyproject.org/Events
let us know.
Dave Clements and the Galaxy Teamhttps://wiki.galaxyproject.org/GalaxyTeam
--
http://galaxyproject.org/GCC2014
http://galaxyproject.org/
http://getgalaxy.org/
http://usegalaxy.org/
https://wiki.galaxyproject.org/
___
Please keep
On Fri, Feb 14, 2014 at 1:33 PM, Dave Clements
cleme...@galaxyproject.orgwrote:
Hello all,
*We are pleased to announce that Early Registration
https://wiki.galaxyproject.org/Events/GCC2014/Register and Talk and
Poster Abstract Submission
https://wiki.galaxyproject.org/Events/GCC2014/Abstracts
Hello all
The call for abstracts for BOSC 2014 is out. See below for details.
If you have questions I'm sure that Peter, Brad, Chris, and Hans-Rudolf,
all frequent contributors to this list, would be answer them. And glad to
see that GigaScience, a GCC sponsor, is also sponsoring BOSC this
#ToolShed_Contributions
-
Other Newshttps://wiki.galaxyproject.org/GalaxyUpdates/2014_03#Other_News
If you have anything you would like to see in the next *Galaxy Update
https://wiki.galaxyproject.org/GalaxyUpdates*, please let us know.
Thanks,
Dave Clements and the Galaxy Teamhttps
Hello all,
*We are pleased to announce that Early Registration
https://wiki.galaxyproject.org/Events/GCC2014/Register and Talk and
Poster Abstract Submission
https://wiki.galaxyproject.org/Events/GCC2014/Abstracts are now open for
the 2014 Galaxy Community Conference (GCC2014)
to see in the next *Galaxy Update
https://wiki.galaxyproject.org/GalaxyUpdates*, please let us know.
Dave Clements and the Galaxy Teamhttps://wiki.galaxyproject.org/GalaxyTeam
--
http://galaxyproject.org/
http://getgalaxy.org/
http://usegalaxy.org/
http://wiki.galaxyproject.org
Hi Eric,
I figured this was as good of a time as any...
I moved the AD/LDAP/External authentication out of the Apache Proxy page
(who would think to look there?) and into its own page. I added my
organisation's information on mod_auth_kerb while I was at it.
That seemed like a reasonable
Hi Eric, Tim,
Hi Tim,
Amazing! Thank you for sharing that code. That'll save me some work when
I get around to implementing it on my galaxies. I'll add a Wiki page for
it later today, lest this knowledge be lost to the mailing list.
That is an excellent suggestion. I've created a log
Hello all,
*We are pleased to announce the 1st Galaxy Australasia Workshop 2014 (GAW
2014) https://wiki.galaxyproject.org/Events/GAW2014 will be held in
Melbourne, Australia on 24 and 25th March 2014.*
The Galaxy Australasia
Workshophttps://wiki.galaxyproject.org/Events/GAW2014 is
a great
If you have anything you would like to see in the next *Galaxy Update
https://wiki.galaxyproject.org/GalaxyUpdates*, please let us know.
Best wishes to you and yours for a happy and spectacular 2014,
Dave Clements and the Galaxy Teamhttps://wiki.galaxyproject.org/GalaxyTeam
--
http
http://bit.ly/gcc2014tdnom before the end of this
Friday.*
Thanks,
Dave C, on behalf of the GCC2014 Organizing Committee
On Mon, Dec 2, 2013 at 10:32 AM, Dave Clements
cleme...@galaxyproject.orgwrote:
Hello all,
Training Day topics are nominated by you http://bit.ly/gcc2014tdnom,
the Galaxy
/GalaxyAdmins.
Thanks to everyone who attended that BoF.
Dave Clements
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Hello all,
*I am pleased to formally announce the Galaxy Deployment Catalog
http://wiki.galaxyproject.org/Community/Deployments*, a place to describe
individual Galaxy deployments, and to learn how others in the community are
implementing Galaxy in production environments.
If you have a Galaxy
Hello all,
Training Day topics are nominated by you http://bit.ly/gcc2014tdnom, the
Galaxy Community. Please take a minute to nominate a topic. Any topic of
interest to the Galaxy Community can be nominated and you are encouraged to
nominate more than one topic. If you are looking for ideas, see
Hello Philip, all
I'm working on a complementary effort that I was going to announce later
this week, but maybe I'll just introduce it now.
Something that came out of the GalaxyAdmins meetup in Oslo was a desire for
some way for the community to describe the details of their Galaxy
deployments
anything you would like to see in the next *Galaxy Update
http://wiki.galaxyproject.org/GalaxyUpdates*, please let us know.
Thanks for an excellent year,
Dave Clements and the Galaxy Team http://wiki.galaxyproject.org/GalaxyTeam
--
http://galaxyproject.org/
http://getgalaxy.org/
http://usegalaxy.org
,
Dave C
On Thu, Nov 14, 2013 at 12:00 AM, Dave Clements
cleme...@galaxyproject.orgwrote:
Hello all,
The next GalaxyAdmins meetup will be Wednesday, November 20, at 10am US
Central time. See the meetup
pagehttp://wiki.galaxyproject.org/Community/GalaxyAdmins/Meetups/2013_11_20
Hi Eric,
I've pasted the text into the
http://wiki.galaxyproject.org/Admin/Config/ProFTPd_with_AD page. I used
the Apache syntax highlighter for the ProFTPd configuration file snippets,
which I'm pretty sure is not exactly right, but I'm guessing it's close
enough.
To unlock a page for editing
Hello all,
The next GalaxyAdmins meetup will be Wednesday, November 20, at 10am US
Central time. See the meetup
pagehttp://wiki.galaxyproject.org/Community/GalaxyAdmins/Meetups/2013_11_20
for
a link and directions for connecting to the meetup.
*GCC2013 GalaxyAdmins BoF Followup*
This is our
like to see in the next *Galaxy
Updatehttp://wiki.galaxyproject.org/GalaxyUpdates
*, please let us know.
Dave Clements and the Galaxy Team http://wiki.galaxyproject.org/GalaxyTeam
--
http://galaxyproject.org/
http://getgalaxy.org/
http://usegalaxy.org/
http://wiki.galaxyproject.org
Hello all,
The 2014 Galaxy Community Conference
(GCC2014)http://wiki.galaxyproject.org/Events/GCC2014 has
been scheduled for June 30 through July 2, at the Homewood
Campushttp://webapps.jhu.edu/jhuniverse/information_about_hopkins/campuses/homewood_campus/
of Johns Hopkins University
forward.
And it's on a Vimeo Plus account, so you won't see any ads for phones,
football teams, telescopes, or faster than light travel. :-)
Dave C
On Mon, Aug 12, 2013 at 12:28 PM, Dave Clements
cleme...@galaxyproject.orgwrote:
Hi Samuel, everyone,
Our main reason for avoiding these ad
Hi Hans-Rudolf, Adam,
As the BoF page indicates, we decided not to do this, for the reasons
listed on the page. So, for now, we won't create a separate email list, or
use MailMan topics (which I had high hopes for).
However, we may not be done with this yet. The plan is still to move
Hello all,
There's a post-doc opening in the Makova Lab at Penn State. See below.
Dave C
Are you interested in genomics and do you have skills in Bioinformatics,
Computational Biology and Statistics? The Makova lab in the Department of
Biology at The Pennsylvania State University is looking to
Hi Joachim,
Something that may help with benchmarking: At the July 2012 GalaxyAdmins
meetup, Anne Black-Ziegelbein talked about how they evaluated filesystem
options. She also included benchmarking scripts and data. See
http://wiki.galaxyproject.org/Community/GalaxyAdmins/Meetups/2012_07_09
://wiki.galaxyproject.org/GalaxyUpdates/2013_09#Tool_Shed_Contributions
-
Other Newshttp://wiki.galaxyproject.org/GalaxyUpdates/2013_09#Other_News
If you have anything you would like to see in the next *Galaxy
Updatehttp://wiki.galaxyproject.org/GalaxyUpdates
*, please let us know.
Dave Clements
Hello all,
At one of the GCC2013 Birds of a Feather
sessionshttp://wiki.galaxyproject.org/Events/GCC2013/BoF/PublicGalaxyServers
the
group was very clear that they would like to see less frequent releases of
Galaxy. We're currently aiming to do a release every 2 months and have
been pretty
of work)
Best Regards
// Samuel
On 07/31/2013 07:51 PM, Dave Clements wrote:
Hello all,
The August 2013 Galaxy Update is now available
http://wiki.galaxyproject.**org/GalaxyUpdates/2013_08http://wiki.galaxyproject.org/GalaxyUpdates/2013_08
.
--
Developer at SNIC-UPPMAX www.uppmax.uu.se
Hello all,
The Galaxy Project is asking for your help on how we should focus our
training efforts for the coming year. If you are interested in Galaxy
Training, please take a few minutes to let us know what you would like to
see offered, and where you would like training to be held:
://wiki.galaxyproject.org/GalaxyUpdates/2013_08#Other_News
If you have anything you would like to see in the next *Galaxy
Updatehttp://wiki.galaxyproject.org/GalaxyUpdates
*, please let us know.
Dave Clements and the Galaxy Team http://wiki.galaxyproject.org/GalaxyTeam
--
http://galaxyproject.org/GCC2013
http
Contributionshttp://wiki.galaxyproject.org/GalaxyUpdates/2013_07#Tool_Shed_Contributions
-
Other Newshttp://wiki.galaxyproject.org/GalaxyUpdates/2013_07#Other_News
If you have anything you would like to see in the August *Galaxy
Updatehttp://wiki.galaxyproject.org/GalaxyUpdates
*, please let us know.
Dave
Hello all,
This is a reminder that
registrationhttp://wiki.galaxyproject.org/Events/GCC2013/Registerfor
the 2013
Galaxy Community Conference
(GCC2013http://wiki.galaxyproject.org/Events/GCC2013)
closes June 14*, just ten days from today. *Registering
Hi Sarah,
We'd be happy to put this on the Galaxy Event Horizon page on the wiki.
Since the event is over, we would list it in the past events section.
Is there a web page for the workshop or slides that we can link to?
And, for future reference, wiki update requests can be sent directly
to
.
Dave Clements and the Galaxy Team http://wiki.galaxyproject.org/GalaxyTeam
--
http://galaxyproject.org/GCC2013
http://galaxyproject.org/
http://getgalaxy.org/
http://usegalaxy.org/
http://wiki.galaxyproject.org/
___
Please keep all replies
that long to get setup.
Thanks,
Dave C.
On Wed, May 8, 2013 at 11:23 AM, Dave Clements
cleme...@galaxyproject.orgwrote:
Hello all,
The next
meetinghttp://wiki.galaxyproject.org/Community/GalaxyAdmins/Meetups/2013_05_15
of
the GalaxyAdmins Grouphttp://wiki.galaxyproject.org/Community
are responsible for large
Galaxy installations.
Thanks,
Dave Clements
--
http://galaxyproject.org/GCC2013
http://galaxyproject.org/
http://getgalaxy.org/
http://usegalaxy.org/
http://wiki.galaxyproject.org/
___
Please keep all replies on the list
/2013_05#Other_News
If you have anything you would like to see in the June *Galaxy
Updatehttp://wiki.galaxyproject.org/GalaxyUpdates
*, please let us know.
Dave Clements and the Galaxy Team http://wiki.galaxyproject.org/GalaxyTeam
--
http://galaxyproject.org/GCC2013
http://galaxyproject.org/
http
less traffic than Galaxy-Dev.
I'm in favor of it. If you have an opinion, please post here.
Thanks,
Dave C
On Wed, Apr 10, 2013 at 1:32 PM, Dave Clements
cleme...@galaxyproject.orgwrote:
Hello all,
First, thanks to Srinivas and Hans for the responses.
I have kept track of the head counts
Hi David,
Using Galaxy to teach undergraduates is a long term interest of mine.
Which, unfortunately, does not mean I have yet put a lot of thought into
it. However, lack of thought hasn't stopped me yet.
First, this topic was discussed in a breakout at last year's GCC:
is another issue, but this is not the topic of this email...
I'll have a better look at how I could use published histories and
workflows...
Thanks,
DJ
2013/4/24 Dave Clements cleme...@galaxyproject.org
Hi David,
Using Galaxy to teach undergraduates is a long term interest of mine
Hello all,
The 2013 GMOD Summer School is now accepting applications. Galaxy will
again be included in the topics covered.
And Amelia says:
Applications are competitive, so we encourage you to apply well before the
deadline, June 10th.
So, if you are interested, act soon.
Dave C
:21 AM
To: Srinivas Maddhi srinivas-mad...@uiowa.edu, Dave Clements
cleme...@galaxyproject.org
Cc: Galaxy Dev List galaxy-...@bx.psu.edu
Subject: Re: [galaxy-dev] GalaxyAdmins Group: Future Directions?
Hi Srinivas
Thank you very much for e-mail...and thereby reminding me that I haven't
the
article processing fees for these articles. See
the announcement
http://wiki.galaxyproject.org/News/GigaScienceGalaxyCFPfor details.
Thanks,
Dave C
On Mon, Feb 25, 2013 at 3:40 AM, Dave Clements
cleme...@galaxyproject.orgwrote:
Dear Galaxy Community,
We are pleased to announce that early
Hello all,
I am pleased to inform you that talks presented at the 2013 Galaxy
Community conference will be eligible for consideration to be published in
the journal *GigaScience* and that BGI will generously cover the article
processing fees for these articles. See the announcement below for
, 2013 at 7:40 PM, Dave Clements
cleme...@galaxyproject.orgwrote:
Dear Galaxy Community,
We are pleased to announce that early
registrationhttp://wiki.galaxyproject.org/Events/GCC2013/Register
and paper and poster abstract
submissionhttp://wiki.galaxyproject.org/Events/GCC2013/Abstracts
Hello all,
The GalaxyAdmins group is coming up on it's one year anniversary
(coinciding with GCC2013) and this is a good opportunity to discuss what
the future of the group should be.
Some starting topics for discussion are on the GalaxyAdmins Future
Directions page
.
Dave Clements and the Galaxy Team http://wiki.galaxyproject.org/GalaxyTeam
--
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http://galaxyproject.org/
http://getgalaxy.org/
http://usegalaxy.org/
http://wiki.galaxyproject.org/
___
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Hi Zeeshan,
There has actually been quite a bit of work on supporting CloudMan on
OpenStack. The whole NECTAR deployment in Australia is based on OpenStack.
What there has not been, as far as I know, is documentation about it.
I suggest creating a Trello card on this (see
Hi Bernardo,
I'm intrigued by this idea. It might be possible to build a Google custom
search, similar to the Tools tab of the usegalaxy search (
http://galaxyproject.org/search/usegalaxy/). That's would not be an ideal
solution, but it would be quick to implement.
Let me take a look at this
Hello all,
The March 2013 Galaxy Update is now
availablehttp://wiki.galaxyproject.org/GalaxyUpdates/2013_03.
See http://wiki.galaxyproject.org/GalaxyUpdates/2013_03. *Highlights
include:*
-
*GCC2013 http://wiki.galaxyproject.org/GalaxyUpdates/2013_03#GCC2013 early
registration
Dear Galaxy Community,
We are pleased to announce that early
registrationhttp://wiki.galaxyproject.org/Events/GCC2013/Register
and paper and poster abstract
submissionhttp://wiki.galaxyproject.org/Events/GCC2013/Abstracts are
now open for the 2013 Galaxy Community Conference
about
using Galaxy to reason with ontologies.
Thanks,
Dave Clements
--
http://galaxyproject.org/wiki/GCC2012http://galaxyproject.org/
http://getgalaxy.org/
http://usegalaxy.org/
http://wiki.galaxyproject.org/
___
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Hi Matt,
Here are a couple of things to consider:
1. Fix Select tool to match special characters:
https://trello.com/c/cwrBpNP9
2. Extend history export to include composite dataset objects/files:
https://trello.com/c/oq1ASbkC
There are lots of other ideas, but they tend to be a lot more work.
#Other_News
If you have anything you would like to see in the March *Galaxy
Updatehttp://wiki.galaxyproject.org/GalaxyUpdates
*, please let us know.
Thanks,
Dave Clements http://wiki.galaxyproject.org/DaveClements and the Galaxy
Team http://wiki.galaxyproject.org/GalaxyTeam
--
http
Hi Carlos,
There does not appear to be an email address associated with your account.
I will try to associate your account with your GMail account and let you
know (off-list) when I think that is done.
And, administrative requests like these can also be sent directly to
Hi Andrew,
If this was on Main at Penn State, there was a problem with uploads that we
believe has now been resolved.
Dave C
On Wed, Jan 16, 2013 at 5:21 PM, Andrew Gorzalski gorzal...@gmail.comwrote:
Hello,
I've encountered a problem uploading some .xlsx files to Galaxy. None of
the files
Hi Eleanne,
Take a look at http://wiki.galaxyproject.org/FTPUpload.
FTP also needs to be enabled on the Galaxy server you are using. Which
server are you trying to connect to?
Thanks,
Dave C.
On Fri, Jan 18, 2013 at 10:42 AM, Solorzano, Eleanne
eleanne.solorz...@unh.edu wrote:
Hello,
/GalaxyUpdates/2012_12#Other_News
If you have anything you would like to see in the January *Galaxy
Updatehttp://wiki.galaxyproject.org/GalaxyUpdates
*, please let us know.
Thanks,
Dave Clements and the Galaxy Team http://wiki.galaxyproject.org/GalaxyTeam
--
http://galaxyproject.org/wiki/GCC2012http
Hi Akshay,
I don't know the answer to your question. So:
1) I went to http://galaxyproject.org/search/web/ and searched for
timeout and then timeout workflow. There are lots of email threads
(and I learned some stuff :-), but I didn't find a direct answer to your
question.
2) I'm sending your
Hello all,
Just a reminder that the November GalaxyAdmins web meetup is tomorrow,
Wednesday, at 10 am central US time. Details are below.
Please join us,
Dave C
On Mon, Nov 5, 2012 at 3:28 PM, IIHG Galaxy Administrator
iihg-galaxy-ad...@uiowa.edu wrote:
Hello,
The next meeting of the
Hi Alan,
I'm CC'ing the Galaxy-Dev list on my response to your question.
I talked with Jen Jackson on this. Her suggestion is that the symlink is
most likely the problem somehow - this time. When in doubt, getting rid of
these good place to start. So recommended starting solution to try - use
://wiki.g2.bx.psu.edu/GalaxyUpdates
*, please let me know.
Thanks,
Dave Clements
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http://getgalaxy.org/
http://usegalaxy.org/
http://galaxyproject.org/wiki/
___
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-
Other News http://wiki.g2.bx.psu.edu/GalaxyUpdates/2012_09#Other_News
If you have anything you would like to see in the October *Galaxy
Updatehttp://wiki.g2.bx.psu.edu/GalaxyUpdates
*, please let me know.
Thanks,
Dave Clements
--
http://wiki.g2.bx.psu.edu/GalaxyUpdates/2012_09
http
Galaxy,
Rejoignez nous en vous inscrivant à
http://lists.bx.psu.edu/listinfo/galaxy-france
Les archives de cette liste sont disponibles à
http://france.list.galaxyproject.org
A très bientôt sur la liste Galaxy France,
Les administrateurs:
Alban Lermine, Olivier Inizan, Rémi Marenco, Dave Clements
/2012_08#New_Distributions
-
Other News http://wiki.g2.bx.psu.edu/GalaxyUpdates/2012_08#Other_News
If you have anything you would like to see in the September *Galaxy
Updatehttp://wiki.g2.bx.psu.edu/GalaxyUpdates
*, please let me know.
Thanks
Dave Clements
--
http://galaxyproject.org/wiki
would like to see in the August *Galaxy
Updatehttp://wiki.g2.bx.psu.edu/GalaxyUpdates
*, please let me know.
Thanks,
Dave Clements
--
http://galaxyproject.org/GCC2012 http://galaxyproject.org/wiki/GCC2012
http://galaxyproject.org/
http://getgalaxy.org/
http://usegalaxy.org/
http
.
See you in Chicago!
Dave Clements, on behalf of the GCC2012 Organizing
Committeehttp://galaxyproject.org/wiki/Events/GCC2012/Organizing%20Committee
Links:
http://galaxyproject.org/GCC2012 http://galaxyproject.org/wiki/GCC2012
http://galaxyproject.org/
http://getgalaxy.org/
http://usegalaxy.org/
http
now
available.
Hope to see you in Chicago!
Dave Clements, on behalf of the GCC2012 Organizing
Committeehttp://galaxyproject.org/wiki/Events/GCC2012/Organizing%20Committee
--
http://galaxyproject.org/GCC2012 http://galaxyproject.org/wiki/GCC2012
http://galaxyproject.org/
http://getgalaxy.org
://wiki.g2.bx.psu.edu/GalaxyUpdates/2012_06#Other_News
If you have anything you would like to see in the July *Galaxy
Updatehttp://wiki.g2.bx.psu.edu/GalaxyUpdates
*, please let me know.
Thanks,
Dave Clements
--
*Galaxy Update http://wiki.g2.bx.psu.edu/GalaxyUpdates* is a (mostly)
monthly summary
Hi Ann,
This code has been to added to the queue of items to be folded into the
main release. A developer will be in touch if and when they have questions.
Thanks for submitting this.
Dave C.
On Wed, May 23, 2012 at 9:14 AM, Ann Black-Ziegelbein
annbl...@eng.uiowa.edu wrote:
Hi -
We have
for the duplicate emails,
Dave C.
On Mon, May 14, 2012 at 1:13 PM, Dave Clements
cleme...@galaxyproject.orgwrote:
Hello all,
The 2012 Galaxy Community Conference (GCC2012), being held in Chicago,
Illinois, July 25-27, is *now just 10 weeks away*. We have updates on:
1. Help set the topics covered
/2012_05#Tool_Shed_Contributions
As always, if you have anything you would like to see in the June *Galaxy
Update http://wiki.g2.bx.psu.edu/GalaxyUpdates*, please let me know.
Thanks,
Dave Clements
--
http://galaxyproject.org/GCC2012 http://galaxyproject.org/wiki/GCC2012
http://galaxyproject.org
Hi Ryan, Ann, and everyone else
I second what Nate says (I always do :-). I too like that it is user
driven. And, while I am not a developer, I do plan on being on the call as
often as possible.
I can also offer my support for logistical and any other support. Ann,
please let me know if you
Hello all,
Just a reminder that the abstract submission deadline for the 2012 Galaxy
Community Conference (GCC2012) is TODAY. See
http://wiki.g2.bx.psu.edu/Events/GCC2012/Abstracts for details.
Thanks,
Dave C
On Mon, Apr 9, 2012 at 2:03 PM, Dave Clements cleme...@galaxyproject.orgwrote
Hello all,
The April 2012 Galaxy
Updatehttp://wiki.g2.bx.psu.edu/GalaxyUpdates/2012_04is now
available.
*Galaxy Update http://wiki.g2.bx.psu.edu/GalaxyUpdates* is a (mostly)
monthly summary of what is going on in the Galaxy community. *Galaxy Updates
* complements the *Galaxy Development News
page for
details.
Looking forward to seeing you in Chicago!
Dave Clements http://wiki.g2.bx.psu.edu/DaveClements, on behalf of
the GCC2012
Organizing
Committeehttp://wiki.g2.bx.psu.edu/Events/GCC2012/Organizing%20Committee
PS: Please help get the word out! A flyer and graphics are at
http
Hi Enis, Greg,
I've taken stuff from my this email, and previous conversations with Enis
and put it in the wiki:
http://wiki.g2.bx.psu.edu/Admin/Cloud/CapacityPlanning
Please feel free to update/correct/enhance.
Dave C.
On Mon, Mar 19, 2012 at 2:58 PM, Enis Afgan eaf...@emory.edu wrote:
H.K.,
Are your questions related to Galaxy, or SICER? Galaxy doc is available at
http://wiki.g2.bx.psu.edu/Learn. SICER doc is at
http://home.gwu.edu/~wpeng/Software.htm. I don't think there is any
particular doc on running SICER under Galaxy.
Dave C.
On Tue, Feb 28, 2012 at 1:14 AM, Vidya
Hi Peter,
I think hmmerscan has been wrapped, but there is a missing e in the
repository name. Look for hmmscan in the toolshed. The description for
it is:
hmmscan, for searching pfam with AA seqs. also included is hmm datatypes
although hmmbuild, etc. isnt included yetX ill try to finish the
Hi Mattias,
Posting to Galaxy-Dev, so others can see the question and response.
Is there anyone using SFTP in a local Galaxy installation? I read that
FTP is insecure because it sends the data and user credentials in plaint
text.
The short answer is yes. See.
Institute http://www.ci.anl.gov/.
Links:
http://galaxyproject.org/GCC2012
http://galaxyproject.org/wiki/Events/GCC2012/Abstracts
Thanks,
Dave Clements
--
http://galaxyproject.org/
http://getgalaxy.org/
http://usegalaxy.org/
http://galaxyproject.org/wiki
Hi John, (and every potential wiki contributor, which on the dev list is
all of you :-)
**
I apologize for missing your question back in December (and for not
noticing it since, either). Thanks to Jen for refreshing the thread.
1. Thanks to your email, I have added your username and *107
Sponsorshttp://wiki.g2.bx.psu.edu/GalaxyUpdates/2012_02#GCC2012_Sponsors
-
New
Distributionshttp://wiki.g2.bx.psu.edu/GalaxyUpdates/2012_02#New_Distributions
If you have anything you would like to see in the March *Galaxy Update*,
please let me know.
Dave Clements
Link: http
, and on
deploying Galaxy in the cloud, and talks and posters on using Galaxy and
several local Galaxy deployments.
See the Galaxy @ PAG2012 page (http://wiki.g2.bx.psu.edu/Events/PAG2012)
and the conference website (http://www.intlpag.org/) for more information.
Dannon Baker and Dave Clements from the Galaxy Team
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