bioc-sig-sequencing  

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• 2011/03/08 [Bioc-sig-seq] BED file parser Thiago Yukio Kikuchi Oliveira
• 2011/03/08 Re: [Bioc-sig-seq] Bioconductor approach to Circos Michael Lawrence
• 2011/03/08 Re: [Bioc-sig-seq] Bioconductor approach to Circos Sean Davis
• 2011/03/08 [Bioc-sig-seq] Bioconductor approach to Circos Ivan Gregoretti
• 2011/03/07 Re: [Bioc-sig-seq] SRAdb and getFastq Jack Zhu
• 2011/03/04 Re: [Bioc-sig-seq] SRAdb and getFastq kirti prakash
• 2011/03/04 Re: [Bioc-sig-seq] SRAdb and getFastq Sean Davis
• 2011/03/04 Re: [Bioc-sig-seq] SRAdb and getFastq Steve Lianoglou
• 2011/03/04 Re: [Bioc-sig-seq] SRAdb and getFastq kirti prakash
• 2011/03/04 Re: [Bioc-sig-seq] SRAdb and getFastq Martin Morgan
• 2011/03/04 Re: [Bioc-sig-seq] 3'-5' position of Affymetrix probe sets Christos Hatzis
• 2011/03/04 Re: [Bioc-sig-seq] SRAdb and getFastq Sean Davis
• 2011/03/04 [Bioc-sig-seq] SRAdb and getFastq kirti prakash
• 2011/03/04 Re: [Bioc-sig-seq] 3'-5' position of Affymetrix probe sets Mike Smith
• 2011/03/03 Re: [Bioc-sig-seq] 3'-5' position of Affymetrix probe sets Christos Hatzis
• 2011/03/03 Re: [Bioc-sig-seq] 3'-5' position of Affymetrix probe sets Steve Lianoglou
• 2011/03/03 Re: [Bioc-sig-seq] more operations on BamViews Steve Lianoglou
• 2011/03/03 Re: [Bioc-sig-seq] more operations on BamViews Michael Lawrence
• 2011/03/03 Re: [Bioc-sig-seq] 3'-5' position of Affymetrix probe sets Christos Hatzis
• 2011/03/03 [Bioc-sig-seq] 3'-5' position of Affymetrix probe sets Stalteri, Maria A
• 2011/03/03 [Bioc-sig-seq] 3'-5' position of Affymetrix probe sets (Christos Hatzis) Stalteri, Maria A
• 2011/03/02 Re: [Bioc-sig-seq] more operations on BamViews Vincent Carey
• 2011/03/02 [Bioc-sig-seq] 3'-5' position of Affymetrix probe sets Christos Hatzis
• 2011/03/02 Re: [Bioc-sig-seq] more operations on BamViews Martin Morgan
• 2011/03/01 Re: [Bioc-sig-seq] RNASeq, differential expression between group, and large variance within groups Gordon K Smyth
• 2011/03/01 [Bioc-sig-seq] RNASeq, differential expression between group, and large variance within groups Gordon K Smyth
• 2011/03/01 [Bioc-sig-seq] more operations on BamViews Michael Lawrence
• 2011/03/01 Re: [Bioc-sig-seq] RNASeq, differential expression between group, and large variance within groups Laurent Gautier
• 2011/02/28 Re: [Bioc-sig-seq] GenomeDataList to data.frame Coercion Michael Lawrence
• 2011/02/28 Re: [Bioc-sig-seq] GenomeDataList to data.frame Coercion Heidi Dvinge
• 2011/02/27 [Bioc-sig-seq] GenomeDataList to data.frame Coercion Dario Strbenac
• 2011/02/25 Re: [Bioc-sig-seq] matchPWM() without PWMscoreStartingAt() Hervé Pagès
• 2011/02/25 Re: [Bioc-sig-seq] GRangesList with duplicate names Pages, Herve
• 2011/02/25 Re: [Bioc-sig-seq] GRangesList with duplicate names Martin Morgan
• 2011/02/25 [Bioc-sig-seq] Feature request: matchPWM() and DNA reverse complement. Ivan Gregoretti
• 2011/02/25 Re: [Bioc-sig-seq] GRangesList with duplicate names Steve Lianoglou
• 2011/02/25 Re: [Bioc-sig-seq] GRangesList with duplicate names Ivan Gregoretti
• 2011/02/25 Re: [Bioc-sig-seq] GRangesList with duplicate names Pages, Herve
• 2011/02/24 [Bioc-sig-seq] GRangesList with duplicate names Dario Strbenac
• 2011/02/24 Re: [Bioc-sig-seq] reduce error on RangedData with unused space names Michael Lawrence
• 2011/02/24 [Bioc-sig-seq] matchPWM() without PWMscoreStartingAt() Ivan Gregoretti
• 2011/02/24 Re: [Bioc-sig-seq] reduce error on RangedData with unused space names Ivan Gregoretti
• 2011/02/24 Re: [Bioc-sig-seq] findOverlaps with GenomicRanges? Janet Young
• 2011/02/24 Re: [Bioc-sig-seq] reduce error on RangedData with unused space names Janet Young
• 2011/02/24 Re: [Bioc-sig-seq] reduce error on RangedData with unused space names Ivan Gregoretti
• 2011/02/24 Re: [Bioc-sig-seq] weird interaction between BSgenome (getSeq) and ChIPpeakAnno Ivan Gregoretti
• 2011/02/24 Re: [Bioc-sig-seq] weird interaction between BSgenome (getSeq) and ChIPpeakAnno Michael Lawrence
• 2011/02/24 Re: [Bioc-sig-seq] reduce error on RangedData with unused space names Michael Lawrence
• 2011/02/24 Re: [Bioc-sig-seq] findOverlaps with GenomicRanges? Martin Morgan
• 2011/02/23 [Bioc-sig-seq] weird interaction between BSgenome (getSeq) and ChIPpeakAnno Janet Young
• 2011/02/23 [Bioc-sig-seq] reduce error on RangedData with unused space names Janet Young
• 2011/02/22 Re: [Bioc-sig-seq] trimLRPatterns question Harris A. Jaffee
• 2011/02/22 Re: [Bioc-sig-seq] findOverlaps with GenomicRanges? Janet Young
• 2011/02/22 Re: [Bioc-sig-seq] findOverlaps with GenomicRanges? Martin Morgan
• 2011/02/22 [Bioc-sig-seq] findOverlaps with GenomicRanges? Janet Young
• 2011/02/22 [Bioc-sig-seq] trimLRPatterns question Kunbin Qu
• 2011/02/22 Re: [Bioc-sig-seq] RNASeq, differential expression between group, and large variance within groups Simon Anders
• 2011/02/22 Re: [Bioc-sig-seq] RNASeq, differential expression between group, and large variance within groups Steve Lianoglou
• 2011/02/21 Re: [Bioc-sig-seq] RNASeq, differential expression between group, and large variance within groups Mads Sønderkær
• 2011/02/21 [Bioc-sig-seq] RNASeq, differential expression between group, and large variance within groups Laurent Gautier
• 2011/02/20 Re: [Bioc-sig-seq] ShortRead + GappedAlignments -> QualityAlignedXStringSet? Martin Morgan
• 2011/02/20 Re: [Bioc-sig-seq] ShortRead + GappedAlignments -> QualityAlignedXStringSet? Michael Lawrence
• 2011/02/20 Re: [Bioc-sig-seq] ShortRead + GappedAlignments -> QualityAlignedXStringSet? Michael Lawrence
• 2011/02/20 [Bioc-sig-seq] ShortRead + GappedAlignments -> QualityAlignedXStringSet? Michael Lawrence
• 2011/02/18 Re: [Bioc-sig-seq] R453Plus1Toolbox Hans-Ulrich Klein
• 2011/02/16 Re: [Bioc-sig-seq] trimLRPatterns; matching pattern from pos -1 gives solveUserSEW error Harris A. Jaffee
• 2011/02/16 Re: [Bioc-sig-seq] trimLRPatterns; matching pattern from pos -1 gives solveUserSEW error Harris A. Jaffee
• 2011/02/16 Re: [Bioc-sig-seq] R453Plus1Toolbox David A.
• 2011/02/16 Re: [Bioc-sig-seq] iteration on two Rle Views Martin Morgan
• 2011/02/16 Re: [Bioc-sig-seq] R453Plus1Toolbox Hans-Ulrich Klein
• 2011/02/16 Re: [Bioc-sig-seq] iteration on two Rle Views Michael Lawrence
• 2011/02/16 [Bioc-sig-seq] trimLRPatterns; matching pattern from pos -1 gives solveUserSEW error Ludo Pagie
• 2011/02/16 [Bioc-sig-seq] R453Plus1Toolbox David A.
• 2011/02/15 [Bioc-sig-seq] iteration on two Rle Views supat thongjuea
• 2011/02/14 Re: [Bioc-sig-seq] IRanges runmean Arithmetic Precision Aboyoun, Patrick E
• 2011/02/14 Re: [Bioc-sig-seq] IRanges runmean Arithmetic Precision Dario Strbenac
• 2011/02/14 Re: [Bioc-sig-seq] viewApplying Efficiently Martin Morgan
• 2011/02/14 Re: [Bioc-sig-seq] IRanges runmean Arithmetic Precision Martin Morgan
• 2011/02/13 [Bioc-sig-seq] IRanges runmean Arithmetic Precision Dario Strbenac
• 2011/02/13 Re: [Bioc-sig-seq] viewApplying Efficiently Martin Morgan
• 2011/02/13 Re: [Bioc-sig-seq] viewApplying Efficiently Dario Strbenac
• 2011/02/13 [Bioc-sig-seq] viewApplying Efficiently Dario Strbenac
• 2011/02/12 [Bioc-sig-seq] Replace Elements of RleList is Slow Dario Strbenac
• 2011/02/11 Re: [Bioc-sig-seq] processing alignments Chu Zhang
• 2011/02/10 Re: [Bioc-sig-seq] processing alignments Paul Leo
• 2011/02/10 Re: [Bioc-sig-seq] processing alignments Steve Lianoglou
• 2011/02/10 Re: [Bioc-sig-seq] processing alignments Paul Leo
• 2011/02/10 Re: [Bioc-sig-seq] processing alignments Steve Lianoglou
• 2011/02/10 [Bioc-sig-seq] processing alignments Chu Zhang
• 2011/02/09 Re: [Bioc-sig-seq] Questions on the edgeR package Mark Robinson
• 2011/02/09 [Bioc-sig-seq] Questions on the edgeR package Jason Lu
• 2011/02/04 Re: [Bioc-sig-seq] goseq for Arabidopsis David A.
• 2011/02/04 [Bioc-sig-seq] goseq for Arabidopsis David A.
• 2011/02/01 Re: [Bioc-sig-seq] short read quality score summary in ShortRead error Martin Morgan
• 2011/02/01 [Bioc-sig-seq] short read quality score summary in ShortRead error Kunbin Qu
• 2011/01/26 Re: [Bioc-sig-seq] finding matches to a motif Ivan Gregoretti
• 2011/01/26 Re: [Bioc-sig-seq] finding matches to a motif Paul Leo
• 2011/01/25 Re: [Bioc-sig-seq] finding matches to a motif Ivan Gregoretti
• 2011/01/25 Re: [Bioc-sig-seq] finding matches to a motif Kasper Daniel Hansen
• 2011/01/25 [Bioc-sig-seq] finding matches to a motif Ivan Gregoretti
• 2011/01/24 Re: [Bioc-sig-seq] Issue RSQLite Steve Lianoglou
• 2011/01/24 Re: [Bioc-sig-seq] Issue RSQLite Steve Lianoglou
• 2011/01/24 [Bioc-sig-seq] Issue RSQLite Luke Zappia
• 2011/01/24 Re: [Bioc-sig-seq] liftOver problem (missing ranges method for Chain ?) Michael Lawrence
• 2011/01/24 [Bioc-sig-seq] liftOver problem (missing ranges method for Chain ?) Boris Lenhard
• 2011/01/21 Re: [Bioc-sig-seq] passing sequences on the fly to cosmo() Harris A. Jaffee
• 2011/01/21 [Bioc-sig-seq] passing sequences on the fly to cosmo() Ivan Gregoretti
• 2011/01/18 Re: [Bioc-sig-seq] strand problem in GenomicRanges Joseph Scandura
• 2011/01/18 Re: [Bioc-sig-seq] strand problem in GenomicRanges Martin Morgan
• 2011/01/18 Re: [Bioc-sig-seq] strand problem in GenomicRanges Hervé Pagès
• 2011/01/17 [Bioc-sig-seq] strand problem in GenomicRanges Joseph Scandura
• 2011/01/15 [Bioc-sig-seq] Bioc course: Advanced R Programming, 17-18 Feb, Seattle Martin Morgan
• 2011/01/12 Re: [Bioc-sig-seq] Dinucleotide Frequencies analysis Hans-Rudolf Hotz
• 2011/01/12 [Bioc-sig-seq] Dinucleotide Frequencies analysis Giancarlo Castellano
• 2011/01/11 [Bioc-sig-seq] Using library(cosmo) for motif detection Ivan Gregoretti
• 2011/01/09 Re: [Bioc-sig-seq] error msg from edgeR estimateCRDisp Gordon K Smyth
• 2011/01/07 Re: [Bioc-sig-seq] error msg from edgeR estimateCRDisp kristen.dang
• 2011/01/07 Re: [Bioc-sig-seq] Consolidating RangedData Michael Lawrence
• 2011/01/07 Re: [Bioc-sig-seq] Consolidating RangedData Ivan Gregoretti
• 2011/01/06 Re: [Bioc-sig-seq] error msg from edgeR estimateCRDisp Laurent Gautier
• 2011/01/06 Re: [Bioc-sig-seq] Consolidating RangedData Steve Lianoglou
• 2011/01/06 Re: [Bioc-sig-seq] Consolidating RangedData Ivan Gregoretti
• 2011/01/06 Re: [Bioc-sig-seq] Consolidating RangedData Michael Lawrence
• 2011/01/06 Re: [Bioc-sig-seq] Consolidating RangedData Ivan Gregoretti
• 2011/01/06 Re: [Bioc-sig-seq] error msg from edgeR estimateCRDisp Gordon K Smyth
• 2011/01/05 Re: [Bioc-sig-seq] error msg from edgeR estimateCRDisp Gordon K Smyth
• 2011/01/05 Re: [Bioc-sig-seq] Consolidating RangedData Michael Lawrence
• 2011/01/05 Re: [Bioc-sig-seq] Consolidating RangedData Ivan Gregoretti
• 2011/01/05 Re: [Bioc-sig-seq] Consolidating RangedData Michael Lawrence
• 2011/01/05 Re: [Bioc-sig-seq] Consolidating RangedData Ivan Gregoretti
• 2011/01/05 Re: [Bioc-sig-seq] Consolidating RangedData Michael Lawrence
• 2011/01/05 Re: [Bioc-sig-seq] Consolidating RangedData Ivan Gregoretti
• 2011/01/05 Re: [Bioc-sig-seq] Consolidating RangedData Martin Morgan
• 2011/01/05 [Bioc-sig-seq] Consolidating RangedData Ivan Gregoretti
• 2011/01/04 Re: [Bioc-sig-seq] error msg from edgeR estimateCRDisp Laurent Gautier
• 2011/01/03 Re: [Bioc-sig-seq] error msg from edgeR estimateCRDisp Gordon K Smyth
• 2011/01/03 Re: [Bioc-sig-seq] error msg from edgeR estimateCRDisp Wong, Chao-Jen
• 2011/01/03 [Bioc-sig-seq] error msg from edgeR estimateCRDisp kristen.dang
• 2011/01/03 Re: [Bioc-sig-seq] error msg from edgeR estimateCRDisp Laurent Gautier
• 2011/01/02 [Bioc-sig-seq] error msg from edgeR estimateCRDisp Gordon K Smyth
• 2011/01/01 [Bioc-sig-seq] 2011 Bogdan Tanasa
• 2010/12/29 [Bioc-sig-seq] error msg from edgeR estimateCRDisp kristen.dang
• 2010/12/20 Re: [Bioc-sig-seq] ShortRead/srFilter custom "chromosome filter" Sean Davis
• 2010/12/20 [Bioc-sig-seq] ShortRead/srFilter custom "chromosome filter" R. T. Sweeney
• 2010/12/16 Re: [Bioc-sig-seq] scanBam Error Martin Morgan
• 2010/12/13 Re: [Bioc-sig-seq] scanBam Error Dario Strbenac
• 2010/12/12 Re: [Bioc-sig-seq] scanBam Error Paul Leo
• 2010/12/12 Re: [Bioc-sig-seq] scanBam Error Dario Strbenac
• 2010/12/12 Re: [Bioc-sig-seq] scanBam Error Martin Morgan
• 2010/12/12 [Bioc-sig-seq] scanBam Error Dario Strbenac
• 2010/12/12 Re: [Bioc-sig-seq] SOLiD color space data Steve Lianoglou
• 2010/12/12 Re: [Bioc-sig-seq] SOLiD color space data Neel Aluru
• 2010/12/12 Re: [Bioc-sig-seq] [BioC] SOLiD color space data Neel Aluru
• 2010/12/12 Re: [Bioc-sig-seq] [BioC] SOLiD color space data rcaloger
• 2010/12/12 Re: [Bioc-sig-seq] SOLiD color space data Steve Lianoglou
• 2010/12/11 Re: [Bioc-sig-seq] SOLiD color space data Neel Aluru
• 2010/12/11 Re: [Bioc-sig-seq] SOLiD color space data Martin Morgan
• 2010/12/11 Re: [Bioc-sig-seq] SOLiD color space data Neel Aluru
• 2010/12/11 Re: [Bioc-sig-seq] SOLiD color space data Martin Morgan
• 2010/12/11 [Bioc-sig-seq] SOLiD color space data Neel Aluru
• 2010/12/10 Re: [Bioc-sig-seq] countOverlaps question Michael Lawrence
• 2010/12/10 [Bioc-sig-seq] countOverlaps question Jason Lu
• 2010/12/09 Re: [Bioc-sig-seq] rtracklayer liftOver Michael Lawrence
• 2010/12/08 Re: [Bioc-sig-seq] short read low complexity filtering Hervé Pagès
• 2010/12/08 Re: [Bioc-sig-seq] short read low complexity filtering Hervé Pagès
• 2010/12/08 [Bioc-sig-seq] rtracklayer liftOver Meier, Samuel
• 2010/12/08 Re: [Bioc-sig-seq] Simulating data Hervé Pagès
• 2010/12/06 Re: [Bioc-sig-seq] Random Intervals in GenomicRanges Anna Terry
• 2010/12/03 Re: [Bioc-sig-seq] trimLRPatterns: can someone clarify the effects of the "ranges" argument? Martin Morgan
• 2010/12/03 Re: [Bioc-sig-seq] trimLRPatterns: can someone clarify the effects of the "ranges" argument? Harris A. Jaffee
• 2010/12/03 Re: [Bioc-sig-seq] Simulating data Jim Silverton
• 2010/12/03 [Bioc-sig-seq] trimLRPatterns: can someone clarify the effects of the "ranges" argument? Lionel (Lee) Brooks 3rd
• 2010/12/03 [Bioc-sig-seq] Normalization of metabolomic data nqueralt
• 2010/12/02 Re: [Bioc-sig-seq] Random Intervals in GenomicRanges Michael Dondrup
• 2010/12/02 [Bioc-sig-seq] Random Intervals in GenomicRanges Anna Terry
• 2010/12/01 Re: [Bioc-sig-seq] GRangesList RAM Usage Michael Lawrence
• 2010/12/01 [Bioc-sig-seq] GRangesList RAM Usage Dario Strbenac
• 2010/12/01 Re: [Bioc-sig-seq] Citing the Bioconductor Ivan Gregoretti
• 2010/12/01 Re: [Bioc-sig-seq] Citing the Bioconductor Sunny Srivastava
• 2010/12/01 [Bioc-sig-seq] Citing the Bioconductor Ivan Gregoretti
• 2010/12/01 Re: [Bioc-sig-seq] Combine GRanges Stored In A GRangesList Michael Lawrence
• 2010/12/01 Re: [Bioc-sig-seq] BSgenome getSeq and unstranded GRanges objects Anna Terry
• 2010/11/30 Re: [Bioc-sig-seq] BSgenome getSeq and unstranded GRanges objects Hervé Pagès
• 2010/11/30 Re: [Bioc-sig-seq] BSgenome getSeq and unstranded GRanges objects Michael Lawrence
• 2010/11/30 Re: [Bioc-sig-seq] RNA-Seq - analysis of time series data? Jakob Hedegaard
• 2010/11/30 [Bioc-sig-seq] BSgenome getSeq and unstranded GRanges objects Anna Terry
• 2010/11/29 Re: [Bioc-sig-seq] Combine GRanges Stored In A GRangesList Steve Lianoglou
• 2010/11/29 [Bioc-sig-seq] Combine GRanges Stored In A GRangesList Dario Strbenac
• 2010/11/29 Re: [Bioc-sig-seq] Normalization paired samples Wolfgang Huber
• 2010/11/29 [Bioc-sig-seq] Course: Intro to R / Bioc, December 9-10 Martin Morgan
• 2010/11/25 Re: [Bioc-sig-seq] Inverted definitions of "precede" and "follow" (IRanges) ? Michael Lawrence
• 2010/11/25 Re: [Bioc-sig-seq] RNA-Seq - analysis of time series data? Mark Robinson
• 2010/11/25 [Bioc-sig-seq] Inverted definitions of "precede" and "follow" (IRanges) ? Ulrike Goebel
• 2010/11/24 Re: [Bioc-sig-seq] getSeq and Btaurus$chrUn.scaffolds - ambiguous name error Hervé Pagès
• 2010/11/24 Re: [Bioc-sig-seq] getSeq and Btaurus$chrUn.scaffolds - ambiguous name error Janet Young
• 2010/11/24 Re: [Bioc-sig-seq] Normalization in RNA-seq Wolfgang Huber
• 2010/11/23 Re: [Bioc-sig-seq] getSeq and Btaurus$chrUn.scaffolds - ambiguous name error Janet Young
• 2010/11/23 Re: [Bioc-sig-seq] RNA-Seq - analysis of time series data? Mark Robinson
• 2010/11/22 Re: [Bioc-sig-seq] RNA-Seq - analysis of time series data? Jakob Hedegaard
• 2010/11/19 Re: [Bioc-sig-seq] Refseq vs Ensembl Steve Lianoglou

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