On Thu, Feb 10, 2011 at 6:42 PM, Peter wrote:
On Thu, Feb 10, 2011 at 6:34 PM, Stephen Taylor wrote:
Sounds like this should be added into the main release. It would save a lot
of time/disk space instead of using Groomer.
I agree. Maybe Dan can take care of it - I don't have bowtie setup
On Tue, Feb 22, 2011 at 1:23 PM, Felix Hammer hamm...@cip.ifi.lmu.de wrote:
I've done that. The intermediate outputs are hidden.
But all the steps are still displayed. I want to hide those, too.
Felix
I'm unclear which bit(s) you want to hide in the GUI.
With the recent enhancements, the run
On Thu, Feb 24, 2011 at 8:47 PM, Amy Boddy abo...@med.wayne.edu wrote:
Hello,
I was wondering how Galaxy calculates the quality score for NGS data?
Is there any documentation I could read on how this is calculated?
Thanks!
-Amy Boddy
Which quality score are you talking about? Raw reads?
Great :)
Don't forget to CC the mailing list in future ;)
On Fri, Feb 25, 2011 at 4:46 PM, Amy Boddy abo...@med.wayne.edu wrote:
Thank you, these articles helped!
On Thu, Feb 24, 2011 at 5:47 PM, Peter Cock p.j.a.c...@googlemail.com
wrote:
On Thu, Feb 24, 2011 at 8:47 PM, Amy Boddy abo
On Mon, Feb 28, 2011 at 9:28 PM, Yang Liu ywl5...@psu.edu wrote:
Is there any tool in Galaxy for trimming the Barcode
in 454 sequencing data? Thanks.
Hi,
The Roche off instrument applications cover this (working
directly with the SFF files). Try asking Edward Kkirton if he
would update his
On Fri, Mar 11, 2011 at 10:07 PM, Albert Ayoub albert.ay...@yale.edu wrote:
I installed Galaxy on my own linux machine. I would like to perform analysis
on local RNAseq files since they are too big to upload. How do we add files
from a local directory or a network share?
Providing you are a
On Mon, Mar 21, 2011 at 1:42 PM, David K Crossman dkcro...@uab.edu wrote:
Hello!
I am fairly new to using Galaxy and have a question about
the FASTQ Groomer feature. I have 4 RNA-Seq raw data files that were just
recently generated from Illumina’s NGS instruments.
Very
Hi all,
I'm having a little trouble understanding the best way to perform some
tabular file manipulations in Galaxy. I have several tabular files,
which contain different numbers of columns, which I want to combine
using a single column containing an identifier (which must match for
the rows to
On Wed, Apr 20, 2011 at 4:00 AM, Edward Dudley egd...@psu.edu wrote:
Hi -
I have a set of 454 reads that have been trimmed and converted to BAM format
using Galaxy, and I can visualize the alignment with E. coli genomes using
the UCSC browser. Problem is, I'd like to display the alignment in
On Tue, May 3, 2011 at 10:00 AM, Robin Mjelle robinmje...@gmail.com wrote:
Dear User,
I am trying to use the tool Compute quality statistics in galaxy on
Ilumina single reads. The file is 2.3 Gb, fastq format. I have performed
Quality format converter on the data set and the format is now
On Fri, May 6, 2011 at 3:16 PM, Roman Valls brainst...@nopcode.org wrote:
Well, having similarly basic tools (in Galaxy) that can be performed on
the commandline, such as sort or cut I just wondered how come a
uniq is not there on the tool panel in some form/name.
Thanks for the feedback Rory
On Tue, May 24, 2011 at 12:40 AM, Aaron Jex a...@unimelb.edu.au wrote:
Hi,
Can’t seem to find an answer to this on your wiki site and it’s not in the
tutorial. I would like to filter my 454 reads for high quality regions,
rename the resulting sequence fragments AND relink the new reads
2011/6/2 Nate Coraor n...@bx.psu.edu:
Hi Louise-Amélie,
I haven't done anything with this code yet, but I wanted to let you know
that we'll eventually be adding it, I'm just going to change the
implementation slightly. I'd like to merge the functionality of the csv
into an xml config I'm
On Wed, Jun 22, 2011 at 6:47 AM, Robert Curtis Hendrickson
curt...@uab.edu wrote:
Nate,
The Galaxy’s ability to pull files with user/password from FTP sites as a
client is great.
However, I need to pull data from an HTTP site at a sequencing center with
user/password (already tried to get
On Fri, Jul 1, 2011 at 4:35 PM, Sergei Ryazansky s.ryazan...@gmail.com wrote:
Thanks for answer, but I have just updated the galaxy source code and blastn
works fine! Sorry for any inconvenience :)
It was an error in the wrapper script's error handler, already fixed.
Peter
2011/7/27 Louise-Amélie Schmitt louise-amelie.schm...@embl.de:
Hello Jennifer,
Aaaah so the grooming means creating the .bai file? Ok, I didn't know,
thanks for the information. But that leaves me wondering why it is necessary
to copy the data (unless the alignments are not sorted yet, which
Note: Local install questions are normally directed to the galaxy-dev
list (CC'd)
rather than galaxy-user
On Mon, Aug 1, 2011 at 3:21 PM, Joseph Hargitai
joseph.hargi...@einstein.yu.edu wrote:
Enis,
a few things we came across:
a, local install
R - not the correct download url,
Which URL
On Tue, Sep 6, 2011 at 9:29 PM, Peng, Tao tp...@fhcrc.org wrote:
Hi I had 3 GTF files from ensemble, UCSC and NCBI for annotation; ONLY
ensemble were recognized by GALAXY cufflinks as a GTF file although they
all have .GTF. I am NOT sure why UCSC and NCBI GTF files were seen as
GFF files?
On Mon, Sep 12, 2011 at 5:20 PM, Lilach F lilac...@gmail.com wrote:
Hi Jennifer,
I already tried 2 weeks ago to upload my whole exome data by FTP, according
to the instructions you sent below. The files are too big, it should take
days for each file, and it always stops in the middle after 12
On Thu, Sep 15, 2011 at 6:11 PM, Paul-Michael Agapow
paul-michael.aga...@hpa.org.uk wrote:
So one of my colleagues has a script he wants to turn into a Galaxy tool.
The twist is that script:
1. Looks for files with a fixed name (e.g. “params.txt”)
2. Accepts other file names
2011/9/28 cuentasecuenciacion secuenciac...@ipb.csic.es:
Hello!!
Does anybody know whether Ion Torrent data is supported by Galaxy?
Thank you!!
IonTorrent data acts a lot like Roche 454, it even comes as SFF files
(or FASTQ). So in principle anything Galaxy supports for 454
would be worth
On Wed, Oct 19, 2011 at 4:53 AM, Florent Angly florent.an...@gmail.com wrote:
I have had the chance to try the patch on several datasets and it looks good
:)
I reiterate my suggestion to pull the patch in galaxy-central.
Best,
Florent
It looks sensible, although I would add a comment to the
On Thu, Oct 20, 2011 at 2:15 PM, Eric Cabot ca...@biotech.wisc.edu wrote:
I was not aware of this new naming. It seems like a terrible decision from
Illumina because now both reads in a pair technically have the same ID (but
a different description).
This is not quite the case. Here are two
On Mon, Oct 24, 2011 at 9:01 AM, Appelt, Uwe
uwe.app...@nct-heidelberg.de wrote:
Dear all,
that has probably been asked 10e6 times, however, I don't find any comments
on how to properly escape special characters in a toolxy.xml. What I want to
achieve is the following:
command
On Mon, Oct 24, 2011 at 9:42 AM, Appelt, Uwe
uwe.app...@nct-heidelberg.de wrote:
Hi Peter,
thanks a lot for your quick reply. However amp;gt; doesn't
seem to work as well. Also, I do have to admit that two different
doesn't work exist.
Notations that are not accepted during parsing of
Hi Uwe,
On Mon, Oct 24, 2011 at 10:47 AM, Appelt, Uwe
uwe.app...@nct-heidelberg.de wrote:
Hi again,
yes, you're right. The problem source is something else. As soon as I specify
one of the following
command interpreter=bash$hisapWrapperScript amp;gt; $logFile/command
command
Sending to galaxy-dev ...
On Thu, Oct 27, 2011 at 5:51 AM, Jim Robinson
jrobi...@broadinstitute.org wrote:
Hi Mike,
Someone from the Galaxy team can perhaps give some insight on
what went wrong, I can comment on the error message from IGV.
That error is thrown from Picard, in every case
On Tue, Nov 1, 2011 at 4:58 PM, Kevin Lam abou...@gmail.com wrote:
actually Illumina 1.8+ has one more quality value higher than fastqsanger
(see http://en.wikipedia.org/wiki/FASTQ_format )
my question now I guess is if I use fastqsanger would it break anything when
it encounters the 'J' in
On Tue, Nov 8, 2011 at 9:57 PM, Austin Paul austi...@usc.edu wrote:
Hi,
I am curious if anyone knows how to select random lines from a fastq file.
There is a select random lines tool in text manipulation tools, but it does
not treat fastq files specifically, so it will not group quality lines
On Tue, Nov 8, 2011 at 10:26 PM, Austin Paul austi...@usc.edu wrote:
Hi Peter,
Thanks for the suggestion. For example, I have a fastq file with 50 million
reads and I want to randomly select 5 million of them. It seems biopython
would very easily select a single or a handful of reads with
On Thu, Nov 10, 2011 at 6:10 PM, Rena Zheng rzh...@mail.med.upenn.edu wrote:
Hi,
I uploaded a bed file to Galaxy and did some text manipulations. I want
to download the new file as a bed format that I can then open up in excel
or a text editor. However, when I save the data, it is a .tabular
On Mon, Nov 14, 2011 at 10:08 PM, Chauhan, Archana achau...@utk.edu wrote:
Dear Sir/Madam,
I am registered with galaxy
http://main.g2.bx.psu.edu/. But I recently came across another link as
https://galaxy.jgi-psf.org/ . This has some very good applications
especially
On Mon, Dec 12, 2011 at 4:34 PM, domantas.motieju...@cropdesign.com wrote:
Hello,
I'm trying to run EMBOSS fuzzpro tool, however, I get Illegal character
error '_', aparently from the fuzzpro tool itself.
One of the input parameters is amino acid sequence pattern, for instance I
submit
On Tue, Feb 7, 2012 at 9:52 PM, Beale, Holly (NIH/NHGRI) [F]
holly.be...@nih.gov wrote:
Hi all --
I'd like to know what programs are used when I run a tool on my data.
Ideally I'd also like to know what parameters are passed to command
line tools.
The short answer is you can't, other than by
On Thursday, February 9, 2012, Jennifer Jackson j...@bx.psu.edu wrote:
Hi David,
It sounds like you are using the public Galaxy server at
http://usegalaxy.org (http://main.g2.bx.psu.edu)? A
BLAST service is not available on the public instance.
(Megablast is available, but for NGS query data
On Thu, Feb 9, 2012 at 9:57 PM, Jennifer Jackson j...@bx.psu.edu wrote:
Hi Peter,
It looks to me like there are versions both, with the Tool Shed version
having the more recent date stamp. But if those extra functions are not
needed, then yes, you are correct, the version included in the
On Sun, Feb 12, 2012 at 10:28 PM, Arthur Zheng haoz...@gmail.com wrote:
Hi,
I have downloaded and installed a local instance of galaxy on the linux
server using my user account according to here:
http://main.g2.bx.psu.edu/
Then I ran the following command:
sh run.sh
and accessed galaxy
On Mon, Feb 13, 2012 at 2:17 AM, Arthur Zheng haoz...@gmail.com wrote:
On Sun, Feb 12, 2012 at 4:34 PM, Peter Cock p.j.a.c...@googlemail.com wrote:
On Sun, Feb 12, 2012 at 10:28 PM, Arthur Zheng haoz...@gmail.com wrote:
Hi,
I have downloaded and installed a local instance of galaxy
On Thu, Feb 23, 2012 at 5:46 PM, Victor Ruotti ruo...@wisc.edu wrote:
Hi,
I hope someone can help me on how to implement this into a wrapper.
This kind of question is normally redirected to the galaxy-dev list.
We would like to add an option so the user can set a sample name
which then be
Hello all,
Did this issue get resolved?
If Sandrine was right about there being an off by one error in GI number in
the BLAST tabular output, it could be a bug in 'legacy' blastall command.
I say 'legacy' BLAST because that's what Galay's NGS 'megablast' tool
is using internally (as opposed to
On Sun, Mar 4, 2012 at 6:34 PM, Hemarajata, Peera hemar...@bcm.edu wrote:
Dear all,
I’m been trying to get Galaxy to recognize this GFF from NCBI (
ftp://ftp.ncbi.nih.gov/genomes/Bacteria/Lactobacillus_reuteri_JCM_1112_uid58875/NC_010609.gff)
but it failed to recognize the format after I
On Mon, Mar 12, 2012 at 6:28 PM, John Major john.e.major...@gmail.com wrote:
A small warning re-the current cloud-Blast+ config.
To properly use the metagenomic tools, if you use the blast+ galaxy tool,
make sure to export in blast.XML, then you'll need a script to parse out the
readID and
You forgot to CC the mailin list.
On Mon, Mar 19, 2012 at 12:02 PM, Peter Cock p.j.a.c...@googlemail.com
wrote:
On Mon, Mar 19, 2012 at 4:53 PM, Innocent Onsongo onson...@umn.edu wrote:
Galaxy Team,
I would like to create a workflow by combining portions of two
different workflows. How do
2012/3/21 Makis Ladoukakis makis4e...@hotmail.com:
Dear Galaxy users,
I have been trying to upload a blastable database in my local instance of
galaxy. I have used the nr database and generated all the nhr, nin, nsq, and
nal files. I have also edited the blastdb.loc file in the
On Wed, Mar 21, 2012 at 10:21 AM, Peter Cock p.j.a.c...@googlemail.com wrote:
2012/3/21 Makis Ladoukakis makis4e...@hotmail.com:
Dear Galaxy users,
I have been trying to upload a blastable database in my local instance of
galaxy. I have used the nr database and generated all the nhr, nin, nsq
On Mon, Apr 2, 2012 at 6:41 PM, Greg Von Kuster g...@bx.psu.edu wrote:
On Mar 24, 2012, at 7:30 AM, Peter Cock wrote:
Have you seen the README file that comes with the
Blast2GO wrapper? Perhaps the 'install from toolshed'
could be tweaked to make this kind of documentation
more visible
On Tue, Apr 24, 2012 at 10:24 PM, Jennifer Jackson j...@bx.psu.edu wrote:
..., using
the BLAST+ BLASTN megablast wrapper that Peter authored, in a local or cloud
instance, would be the best immediate remedy (this version has the standard
12 column output). Sequence length data could always be
On Tue, Jul 31, 2012 at 7:35 PM, Jennifer Jackson j...@bx.psu.edu wrote:
Hello Rachel,
When datasets are in a grey waiting to run state this indicates that they
are in the queue and in line to run. For the majority of cases, including
yours, leaving the job alone and allowing it to run is the
On Thu, Aug 2, 2012 at 7:50 PM, D. A. Cowart dac...@psu.edu wrote:
Hello,
I am attempting to use Galaxy to calculate the mean sequence read length and
identify the range of read lengths for my 454 data. The data has already
been organized and sorted by species. The format of the data is as
On Tue, Aug 21, 2012 at 4:46 PM, Ted Goldstein t...@soe.ucsc.edu wrote:
I am developing several tools that will need to read and write multiple
data files at once. For example, Eisen Cluster produces a heatmap
which consists of three files: a .cdt file, .atr file and a gtr file which
are
On Thu, Aug 23, 2012 at 8:44 PM, mailing list margeem...@gmail.com wrote:
Anyway, back to my question. Does anyone know? Would I be better off
asking on the developer mailing list or perhaps Stack Overflow?
Software licensing is a much broader issue that Galaxy, so yes,
perhaps Stack Overflow
On Tue, Sep 4, 2012 at 5:57 PM, Luca Pireddu pire...@crs4.it wrote:
Hello list.
A simple question: is there a git mirror of the Galaxy repositories? If
not, what do git users here do to work with the Galaxy code base?
Thanks,
I don't think there is an official git mirror, but even if there
On Wed, Oct 3, 2012 at 3:54 PM, John DeFilippo defilippo.j...@gmail.com wrote:
We're using the free public Galaxy server (main.g2.bx. psu.edu). We
uploaded a genome FASTA sequence via ftp, and want to do BLAST searches
(e.g., tblastn) against protein sequences that we've also uploaded to
On Mon, Oct 8, 2012 at 8:26 AM, Joel Rosenberg thisisj...@hotmail.com wrote:
So I'm trying to install the recently migrated ncbi_blast_plus tool from the
Tool Shed to my local galaxy instance running in EC2 and am getting errors at
the installation step.
After clicking Install to local
On Tue, Oct 16, 2012 at 8:22 PM, Fang,Xiefan xiefanf...@ufl.edu wrote:
Dear Galaxy users,
Does anyone know how to merge several FASTQ groomer files by using
Galaxy? If not, is there any other program that can achieve this? The size
of one FASTQ groomer file is around 1GB. Thank you!
On Wed, Nov 14, 2012 at 9:00 AM, Masaki MS msmorioka-...@umin.ac.jp wrote:
Dear all,
I'm trying to set up samtools sort command on local Galaxy server.
But I can not success to get sorted files from its result.
I thought Galaxy tried to keep SAM/BAM files sorted by default...
First time, I
On Mon, Nov 26, 2012 at 6:47 PM, Zhiqiang Shu z...@bio.fsu.edu wrote:
Hi, Galaxy users!
I have a question on how to find out sense and antisense sequence. I've got
RNA seq data in the fastq format. The sequences inside are partially
complementary to each other (complementary is 10nt, while
On Tue, Nov 27, 2012 at 9:51 PM, shamsher jagat kanwar...@gmail.com wrote:
Is there an option in galaxy to combine two fastq files?
Thanks
kanwar
Yes, but what do you mean by combine? Interleave? Concatenate?
Peter
___
The Galaxy User
On Friday, November 30, 2012, Sachit Adhikari wrote:
Where are the user's information stored in Galaxy? I can't find the
information in universe_wsgi.
Regards,
Sachit
It is in the database (PostgreSQL usually, but MySQL is also supported,
and for simple test setups even SQLite mostly
On Thursday, February 21, 2013, wrote:
Further, when I try “register” I add an email address and password, but
the system still doesn’t log me in
** **
Maybe this is a database configuration issue?
** **
I didn’t think I’d need to state any specific entries in universe as I am
On Wed, Apr 3, 2013 at 3:40 PM, Gema Sanz Santos ge2sa...@gmail.com wrote:
Hello,
I'm trying to change the format to the output files from Barcode splitter
from FASTA to FASTAQ so I can use them in Bowtie for Illumina. I've read
that it can be done through the edit attributes, I go to
On Sun, Apr 28, 2013 at 11:22 PM, Mike Dyall-Smith
mike.dyallsm...@gmail.com wrote:
This should be easy (but not for me so far). I want to do local blast
searches, so I download the premade nr protein blast database from GenBank.
It is split into 10 .tar.gz files.
I've decompressed them
On Mon, Apr 29, 2013 at 3:27 AM, Mike Dyall-Smith
mike.dyallsm...@gmail.com wrote:
Dear Peter Cock, thanks for your advice. Just to be clear, do I leave the
files within their decompressed folders or do I put all the individual files
into one folder? I assume the former, but want to be sure
On Thu, May 9, 2013 at 12:27 PM, Casey,Richard
richard.ca...@colostate.edu wrote:
Hi,
We have two Filter FASTQ jobs running on the Galaxy public server.
Both jobs have been running for more than four days. This seems like
an excessive amount of runtime. Do Filter FASTQ jobs normally take
On Wed, Jul 24, 2013 at 5:21 AM, Sachit Adhikari
sachit.techner...@gmail.com wrote:
Hi group,
The galaxy stores the output of the job on files/043/dataset_ID.dat.
I have two questions here.:
1) Can I find the ID of my output from the Galaxy history? I tried Edit
Attributes, Annotations,
On Wed, Jul 24, 2013 at 10:35 AM, Sachit Adhikari
sachit.techner...@gmail.com wrote:
Hi,
By i do you mean Edit attributes button? There are four sub-headings on
that: Attributes, Convert format, Datatype and permissions but I can't see
data file's full path on any of them. What's wrong?
No,
On Wed, Jul 24, 2013 at 11:15 AM, Sachit Adhikari
sachit.techner...@gmail.com wrote:
Yes, but unfortunately that didn't work too. I have already tried the
solution you provided. I could edit the tags and annotations but it won't
change the file name in my file system. The file is still named as
On Tue, Jul 30, 2013 at 5:27 PM, Ketan Maheshwari
ketancmaheshw...@gmail.com wrote:
Hi,
I am a relatively new Galaxy user. I am wondering if there is an example of
a tool which allows users to view at the stdout/err of a tool live while it
is still running to get a sense of progress it is
On Wednesday, July 31, 2013, Mayank Tandon wrote:
That's a neat trick, and I definitely wouldn't have thought of that
approach, so thanks for that!
After I finished writing this out, I realized it was super long. So here
are the questions I'm asking up front, so you can choose whether or
On Thu, Aug 22, 2013 at 12:07 AM, Ketan Maheshwari
ketancmaheshw...@gmail.com wrote:
Hi,
I am wondering if it is possible in Galaxy to design a tool whose sole
purpose is to run other tools.
This is motivated by our desire to enhance execution capabilities of
existing tools via a generic
On Tue, Aug 27, 2013 at 2:07 PM, lilach noy lilach...@gmail.com wrote:
Thank you for the reply.
Where can i find the log file?
As an ordinary Galaxy user, I'm not sure if this is possible.
You would have to be running your own Galaxy instance,
look at the file paster.log in the main Galaxy
On Wed, Sep 25, 2013 at 7:27 PM, Lauren Oldfield lm...@pitt.edu wrote:
My question: How can I generate a pileup with an output of more than 8000
hits per base? I was generating pileups using the SAM tools -- Generate
pileup and do not see an option to change the settings for output. In
mpileup
On Fri, Nov 22, 2013 at 8:48 PM, Jennifer Jackson j...@bx.psu.edu wrote:
Hi Seung Hee,
I know we discussed this on the other list, but I didn't point you to the
open development ticket to (potentially) extend the functions of the Cut
tool. This is not being actively worked on right now, but
On Sat, Dec 14, 2013 at 8:52 AM, Jorge Braun braun_...@hotmail.com wrote:
Hello, of course, Jennifer is right for the first question . For
the second question about blast ... I wonder if running after
blast in galaxy I can remove sequences that can contaminate
the data. It's possible?
The
On Mon, Jan 20, 2014 at 3:53 PM, Leontovich, Alexey A., Ph.D.
leontovich.ale...@mayo.edu wrote:
Hello,
It seems that usegalaxy.org is down. Is it?
Thank you.
Alexey Leontovich
It was down yes, but should be OK now:
@GalaxyProject on Twitter recently:
After a short downtime we are back up
On Fri, Jan 31, 2014 at 5:13 PM, Ketan Maheshwari
ketancmaheshw...@gmail.com wrote:
Hi,
In a test tool that I am working on, I need to enter text preceded by a $
sign to be interpreted as an environment variable by the underlying running
script. However, it seems that the $ sign gets
On Thu, Feb 27, 2014 at 9:32 AM, do kadya doka...@gmail.com wrote:
Hi,
Thank You for your kind reply.
I am having problem in running command in Galaxy.
my current command:
tool_name file_having_multiple_file_name_tab_delimited.txt or .tab
file1.bam file2.bam
/usr/bin/x_tool
On Thu, Feb 27, 2014 at 4:20 PM, do kadya doka...@gmail.com wrote:
I don't think so that problem is in tool, because when I run same tool of
normal terminal, it generate output.
This is why I was asking about Perl environment variables - they may be
different compared to when you run the tool.
On Fri, Mar 14, 2014 at 9:58 AM, Elvio Pederzolli
epede...@bigpond.net.au wrote:
Hi there can you please unsubscribe me from all Galaxy lists please
Thank you
Elvio Pederzolli
You should be able to unsubscribe yourself here:
http://lists.bx.psu.edu/listinfo/galaxy-user
Regards,
Peter
Hi all,
I see that https://biostar.usegalaxy.org is live now, with lots of
content mined from the galaxy-user mailing list (which may or may not
result in this email starting a new question? We shall see...).
Is it possible for an admin to merge accounts? e.g. there are all me:
On Thu, Apr 24, 2014 at 2:40 PM, Peter Cock p.j.a.c...@googlemail.com wrote:
Hi all,
I see that https://biostar.usegalaxy.org is live now, with lots of
content mined from the galaxy-user mailing list (which may or may not
result in this email starting a new question? We shall see
Hi Scott,
Could you clarify *which* Galaxy server you are using, and
*which* megablast tool within Galaxy? Most BLAST options
within Galaxy do NOT send the queries to the NCBI servers.
(1) Main Public Galaxy
I would guess you are using the main Galaxy Server, which
only has this megablast
On Mon, Apr 28, 2014 at 9:01 PM, Scott Tighe scott.ti...@uvm.edu wrote:
Peter
Thank you for your detailed response and I should have noted that I was
using the Main Public Galaxy. Thank you for confirming that it is down!
I appreciate your input!
Scott
Hi Scott,
Galaxy is back for me
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