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• • Re: [Mauve-users] how to view the aligned sequence, please Aaron Darling
• [Mauve-users] mauve terminal running error Jingjing Jin
  • Re: [Mauve-users] mauve terminal running error Aaron Darling
• [Mauve-users] Extract core alignment in fasta format from Mauve output Lu Cheng
  • Re: [Mauve-users] Extract core alignment in fasta format from Mauve output Peter Hoyt
• [Mauve-users] Mauve output Manal Farid
  • Re: [Mauve-users] Mauve output Aaron Darling
  • Re: [Mauve-users] Mauve output Eduardo Castro Nallar
• [Mauve-users] progressiveMauve LCBs dpanis
  • Re: [Mauve-users] progressiveMauve LCBs Aaron Darling
• [Mauve-users] Query about mauve error Hiren Ghosh
  • Re: [Mauve-users] Query about mauve error Aaron Darling
  • Re: [Mauve-users] Query about mauve error Hiren Ghosh
  • Re: [Mauve-users] Query about mauve error Aaron Darling
  • Re: [Mauve-users] Query about mauve error Meg Woolfit
• [Mauve-users] Error during contig reordering Shlomo Blum
• [Mauve-users] Strain specific regions Shlomo Blum
• [Mauve-users] annotations lost in contig mover Lee Katz
• [Mauve-users] inconsistent error in progressiveMauve Bas E. Dutilh
• [Mauve-users] OutOfMemoryError, "Thread-7": Java heap space using Mauve Contig Mover Lucinda Lawson
• [Mauve-users] Export SNPs from the command line Tracy Doyle
• [Mauve-users] "oh skeethockey mushrooms" fix Bob Cohen
• [Mauve-users] Errors in Constructing seed occurrence lists for repeat detection Bas E. Dutilh
  • Re: [Mauve-users] Errors in Constructing seed occurrence lists for repeat detection Bas E. Dutilh
  • Re: [Mauve-users] Errors in Constructing seed occurrence lists for repeat detection Bas E. Dutilh
• [Mauve-users] stripGapColumns Camilla Nesbo
• [Mauve-users] Slow Visualization. Any tips? peter.r.h...@okstate.edu
• [Mauve-users] memory Kirstin Hanks
  • Re: [Mauve-users] memory peter.r.h...@okstate.edu
• [Mauve-users] problem exporting orthologs Alina Grigorescu
• [Mauve-users] can Mauve provide the % similarity between aligned genomes? Alina Grigorescu
• [Mauve-users] std::ios_base::failure Animesh Sharma
• [Mauve-users] copy sequence from Mauve alignment Alina Grigorescu
• [Mauve-users] bug in stripSubsetLCBs? Adam Retchless
  • [Mauve-users] bbcols (was: bug in stripSubsetLCBs?) Adam Retchless
• [Mauve-users] aligning sequences in MAUVE maha ahmed
• Re: [Mauve-users] Can features from a reference genome be transferred to a draft genome? peter.r.h...@okstate.edu
• [Mauve-users] Can features from a reference genome be transferred to a draft genome? peter.r.h...@okstate.edu
• [Mauve-users] problem with input files in mauve Alina Grigorescu
  • Re: [Mauve-users] problem with input files in mauve Guy Plunkett III
  • Re: [Mauve-users] problem with input files in mauve Alina Grigorescu
  • Re: [Mauve-users] problem with input files in mauve Guy Plunkett III
  • [Mauve-users] How to map back mauve alignment to original individual Sequences Münsterkötter, Martin, Dr.
  • Re: [Mauve-users] How to map back mauve alignment to original individual Sequences Anna Rissman
• [Mauve-users] Mauve for HPC/Cloud Stamps, Blake W.
  • Re: [Mauve-users] Mauve for HPC/Cloud Theodore Omtzigt
• [Mauve-users] unique genes Bruijn, Irene de
• [Mauve-users] percent identity between genomes Joseph Fass
• [Mauve-users] CDS not recognised as orthologues (Export: Ortholog) Johanna Klughammer
• [Mauve-users] sequence "screenshot" tool? Joseph Fass
• [Mauve-users] aligning multiple Eukaryotic genome Pankaj Barah
• [Mauve-users] seg fault in projectAndStrip Josh Earl
• [Mauve-users] Question on MCM output files Donthu, Ravikiran
• [Mauve-users] Error Code: 3 Anna Tai
• [Mauve-users] LCB boundary file? mlcourrier-...@yahoo.fr
• [Mauve-users] Error with multi-fasta file inputs Bin Ye
• [Mauve-users] Identify contig borders Thomas Weinmaier
• [Mauve-users] assembly scoring script issue Roy Weckiewicz
• [Mauve-users] X11 problem when running cmd line contig reordering Steven Platt
  • Re: [Mauve-users] X11 problem when running cmd line contig reordering Alex Copeland
  • Re: [Mauve-users] X11 problem when running cmd line contig reordering Steven Platt
  • Re: [Mauve-users] X11 problem when running cmd line contig reordering Anna Rissman
  • Re: [Mauve-users] X11 problem when running cmd line contig reordering Roy Weckiewicz
  • Re: [Mauve-users] X11 problem when running cmd line contig reordering Anna Rissman
  • Re: [Mauve-users] X11 problem when running cmd line contig reordering Nick Loman
• [Mauve-users] mauve comand line problem Tomiczek, Bartlomiej
• [Mauve-users] order of sequences Kirstin Hanks
  • Re: [Mauve-users] order of sequences Joseph Fass
• [Mauve-users] feature coordinate comparison Münsterkötter, Martin, Dr.
• [Mauve-users] java.lang.ArrayIndexOutOfBoundsException error Surya Saha
• [Mauve-users] Uploading Data to Mauve Using Java Web Start (JNLP) Al Ramsey
• [Mauve-users] Coordinate system Omar Eduardo Cornejo Ordaz
• [Mauve-users] coordinate issues Satbir Gill
• [Mauve-users] problems with stripSubsetLCBs Mcnally, Alan
  • [Mauve-users] Problems with stripsubsetlcbs Talia Karasov
  • Re: [Mauve-users] Problems with stripsubsetlcbs Aaron Darling
• [Mauve-users] Constructing seed occurrence lists for repeat detection bug? Yang Li
• [Mauve-users] Problem with Mauve Pedamallu Chandra Sekhar
• [Mauve-users] Export jpeg or other picture format via command-line? Roy Weckiewicz
• Re: [Mauve-users] Mauve error code 11 Guy Plunkett III
• [Mauve-users] Parallel mauve Nick Loman
  • Re: [Mauve-users] Parallel mauve Kathryn Holt
  • [Mauve-users] Parallel Mauve Shyam Saladi
• [Mauve-users] error 134 Kirstin Hanks
• [Mauve-users] cinema-MX sepideh
• [Mauve-users] Problem with aligned/unaligned coordinates [.backbone to .xmfa] Maren Friesen
• [Mauve-users] Error code: -2147483645 Guy Plunkett III
• [Mauve-users] Out of Bounds error Gandhi, Khanjan
• [Mauve-users] Mauve Contig Mover "Thread-26" java.lang.error.Error: Inconsistency error Glorimar Marrero
• [Mauve-users] Genome annotations using clonal origin? Sang Chul Choi
• [Mauve-users] mauve error code 3 denghuiguo
• [Mauve-users] Using mauve to align scaffolds Nick Loman
  • Re: [Mauve-users] Using mauve to align scaffolds Joseph Fass
  • Re: [Mauve-users] Using mauve to align scaffolds Nick Loman
• [Mauve-users] identity matrix -or- genome content distance matrix Matthew Bendall
• Re: [Mauve-users] SNP file from command line Lee Katz
  • [Mauve-users] SNP file from command line Gandhi, Khanjan
• Re: [Mauve-users] contig mover_error message-unknown source ANNA INDIGO RISSMAN
• [Mauve-users] Mugsy vs Mauve Nick Loman
• [Mauve-users] Running mauve in headless mode Nick Loman
  • Re: [Mauve-users] Running mauve in headless mode ANNA INDIGO RISSMAN
  • Re: [Mauve-users] Running mauve in headless mode Sang Chul Choi
• [Mauve-users] Choosing reference genomes for contig mover John Larsson
  • Re: [Mauve-users] Choosing reference genomes for contig mover ANNA INDIGO RISSMAN
• [Mauve-users] Running time of about 50 bacterial genomes, each of which is about 2 Mbp? Sang Chul Choi
• [Mauve-users] 55 genomes alignment try - Bad file descriptor error? Sang Chul Choi
• [Mauve-users] Drag and drop behavior Lex Nederbragt
• [Mauve-users] File format of incomplete genomes Malene Bek-Thomsen
  • Re: [Mauve-users] File format of incomplete genomes Aaron Darling
• [Mauve-users] Alignment coverage threshold for ortholog export Snitkin, Evan (NIH/NHGRI) [F]
  • Re: [Mauve-users] Alignment coverage threshold for ortholog export Aaron Darling
• [Mauve-users] Aligning Exomes Rosenfeld, Jeffrey
  • Re: [Mauve-users] Aligning Exomes Aaron Darling
• [Mauve-users] Mauve alignment viewer OutOfMemoryError Guy Plunkett III
  • Re: [Mauve-users] Mauve alignment viewer OutOfMemoryError Aaron Darling
  • Re: [Mauve-users] Mauve alignment viewer OutOfMemoryError Guy Plunkett III
• [Mauve-users] Mauve - reordered annotations Münsterkötter, Martin, Dr.
• [Mauve-users] Exporting orthologs Claudio Donati
  • Re: [Mauve-users] Exporting orthologs Aaron Darling
  • Re: [Mauve-users] Exporting orthologs Claudio Donati
• [Mauve-users] (no subject) Sullivan, Steven
  • Re: [Mauve-users] (no subject) Aaron Darling
  • Re: [Mauve-users] java errors during Contig Mover run Sullivan, Steven
  • Re: [Mauve-users] java errors during Contig Mover run ANNA INDIGO RISSMAN
  • [Mauve-users] (no subject) Aguas, Ricardo J A
  • Re: [Mauve-users] (no subject) Aaron Darling
  • [Mauve-users] Fwd: Re: (no subject) Sean Li
  • Re: [Mauve-users] Fwd: Re: (no subject) Aaron Darling
  • [Mauve-users] (no subject) Bigelow, Simone
  • Re: [Mauve-users] (no subject) Shlomo Blum
  • Re: [Mauve-users] (no subject) Shlomo Blum
  • Re: [Mauve-users] (no subject) Bats
  • Re: [Mauve-users] (no subject) Shlomo Blum
  • Re: [Mauve-users] (no subject) Aaron Darling
  • Re: [Mauve-users] (no subject) Bigelow, Simone
  • [Mauve-users] (no subject) Amarin Cogburn
  • [Mauve-users] (no subject) Varduhi Petrosyan
  • Re: [Mauve-users] (no subject) Aaron Darling
• [Mauve-users] interpreting back bone file Kirstin Hanks
  • Re: [Mauve-users] interpreting back bone file Aaron Darling
• [Mauve-users] fasta formt expectations Guy Plunkett III
  • Re: [Mauve-users] fasta formt expectations Aaron Darling
  • Re: [Mauve-users] fasta formt expectations Guy Plunkett III
• [Mauve-users] Annotation and sequences extraction Mathieu Parent
  • Re: [Mauve-users] Annotation and sequences extraction Aaron Darling
• [Mauve-users] DNASTAR sequences aligned but cannot display Guy Plunkett III
  • Re: [Mauve-users] DNASTAR sequences aligned but cannot display Aaron Darling
• [Mauve-users] xmfa jason sahl
  • Re: [Mauve-users] xmfa Aaron Darling
• [Mauve-users] Genbank alternatives ? Anastasia Gioti
  • Re: [Mauve-users] Genbank alternatives ? Aaron Darling
  • Re: [Mauve-users] Genbank alternatives ? Anastasia Gioti
  • Re: [Mauve-users] Genbank alternatives ? Guy Plunkett III
• Re: [Mauve-users] 64 bit Mauve contig mover? Aaron Darling
• [Mauve-users] Genbank loading unsuccessful in graphical interface-error code 134 Anastasia Gioti
  • Re: [Mauve-users] Genbank loading unsuccessful in graphical interface-error code 134 Aaron Darling
  • Re: [Mauve-users] Genbank loading unsuccessful in graphical interface-error code 134 Anastasia Gioti
• [Mauve-users] The LCB boundary file Ariadna Rodriguez Chamorro
  • Re: [Mauve-users] The LCB boundary file Aaron Darling
  • Re: [Mauve-users] The LCB boundary file Sonja Voget
• [Mauve-users] mauve progressive error in linux Joel McManus
  • Re: [Mauve-users] mauve progressive error in linux Aaron Darling
• [Mauve-users] Getting snps or orthologs from the command line Snitkin, Evan (NIH/NHGRI) [F]
  • Re: [Mauve-users] Getting snps or orthologs from the command line Aaron Darling
  • Re: [Mauve-users] Getting snps or orthologs from the command line Kirstin Hanks
• Re: [Mauve-users] Mauve-users Digest, Vol 13, Issue 1 tomas duffy
• [Mauve-users] Export Orthologs question tomas duffy
  • Re: [Mauve-users] Export Orthologs question Aaron Darling
• [Mauve-users] Memory allocation error in MauveAligner Nicolas Tourasse
  • Re: [Mauve-users] Memory allocation error in MauveAligner Aaron Darling
  • Re: [Mauve-users] Memory allocation error in MauveAligner Nicolas Tourasse
• [Mauve-users] Building mauve Daniel Silvestre
  • Re: [Mauve-users] Building mauve Aaron Darling
• [Mauve-users] Gap Penalties Ryan Tewhey
  • Re: [Mauve-users] Gap Penalties Aaron Darling
• [Mauve-users] Genbank Annotation not shown in Alignment Jason Flowers
  • Re: [Mauve-users] Genbank Annotation not shown in Alignment Jason Flowers
• [Mauve-users] HOXD question Sean Conlan
  • Re: [Mauve-users] HOXD question Guy Plunkett III
  • Re: [Mauve-users] HOXD question Pat Burke
  • Re: [Mauve-users] HOXD question Aaron Darling
• [Mauve-users] mauve users Dag Anders Brede
  • Re: [Mauve-users] mauve users Debarati Paul
  • Re: [Mauve-users] mauve users Aaron Darling
• [Mauve-users] mauve on OS X 10.6 Hinsby Cadillo
  • Re: [Mauve-users] mauve on OS X 10.6 Aaron Darling
• [Mauve-users] mauve on OS X 10.6 Douglas Ridgway
  • Re: [Mauve-users] mauve on OS X 10.6 Aaron Darling
  • Re: [Mauve-users] mauve on OS X 10.6 Hinsby Cadillo
• [Mauve-users] export orthologs error Sarah Munro
  • Re: [Mauve-users] export orthologs error Aaron Darling
• [Mauve-users] Command line contig mover Snitkin, Evan (NIH/NHGRI) [F]
  • Re: [Mauve-users] Command line contig mover Aaron Darling
• [Mauve-users] Problem with Mauve Contigs Mover Hao-Ping Chen
  • Re: [Mauve-users] Problem with Mauve Contigs Mover Aaron Darling
• [Mauve-users] Mauve 2.3.0 on PowerPC Mac problem Guy Plunkett III
  • Re: [Mauve-users] Mauve 2.3.0 on PowerPC Mac problem Guy Plunkett III
  • Re: [Mauve-users] Mauve 2.3.0 on PowerPC Mac problem Juan Carlos Garcia
  • Re: [Mauve-users] Mauve 2.3.0 on PowerPC Mac problem Guy Plunkett III
  • Re: [Mauve-users] Mauve 2.3.0 on PowerPC Mac problem Aaron Darling

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